Pregenerated sensors for LINC00408 (Homo sapiens)
Ensembl gene IDs: ENSG00000226250Ensembl transcript IDs: ENST00000447784.1, ENST00000653982.1, ENST00000660513.1, ENST00000663325.1, ENST00000663501.1, ENST00000663692.1, ENST00000664751.1, ENST00000665951.1, ENST00000668892.1, ENST00000669381.1, ENST00000671023.1
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGCCCCCGCAGACACTCTCCTACCACTCCACCACTCTGGTCAAGCTaGAGTCTCTGTCTCTGCCACCAACTGCAGCGAGGTGAGCCACAG | + |
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Preference number: 5 (lower is better) Translates to: GPRRHSPTTPPLWSS*SLCLCHQLQRGEPQ Trigger: CTGTGGCTCACCTCGCTGCAGTTGGTGGCAGAGACAGAGACTGCAGCTTGACCAGAGTGGTGGAGTGGTAGGAGAGTGTCTGCGGGGGCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000660513.1 ENST00000663501.1 |
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| CDS CCA 90 bp | CCTCCAGGAGGCCCCCGCAGACACTCTCCTACCACTCCACCACTCTaGTCAAGCTGCAGTCTCTGTCTCTGCCACCAACTGCAGCGAGGT | + |
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Preference number: 5 (lower is better) Translates to: PPGGPRRHSPTTPPL*SSCSLCLCHQLQRG Trigger: ACCTCGCTGCAGTTGGTGGCAGAGACAGAGACTGCAGCTTGACCAGAGTGGTGGAGTGGTAGGAGAGTGTCTGCGGGGGCCTCCTGGAGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000660513.1 ENST00000663501.1 |
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| CDS TCA 90 bp | CTGGTCAAGCTGCAGTCTCTGTCTCTGCCACCAACTGCAGCGAGGTaGGCCACAGAACCATGCCATCTGCAGGCTCCAGCCTCCAGCGTG | + |
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Preference number: 5 (lower is better) Translates to: LVKLQSLSLPPTAAR*ATEPCHLQAPASSV Trigger: CACGCTGGAGGCTGGAGCCTGCAGATGGCATGGTTCTGTGGCTCACCTCGCTGCAGTTGGTGGCAGAGACAGAGACTGCAGCTTGACCAG 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 11 transcripts: ENST00000447784.1 ENST00000653982.1 ENST00000660513.1 ENST00000663325.1 ENST00000663501.1 ENST00000663692.1 ENST00000664751.1 ENST00000665951.1 ENST00000668892.1 ENST00000669381.1 ENST00000671023.1 |
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| CDS TCA 90 bp | CAGAACCATGCCATCTGCAGGCTCCAGCCTCCAGCGTGCAACAGATaGCTCCTCCATCTCCTGGCTCGAAGCAACTGGGTGGTAAAAGCC | + |
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Preference number: 5 (lower is better) Translates to: QNHAICRLQPPACNR*LLHLLARSNWVVKA Trigger: GGCTTTTACCACCCAGTTGCTTCGAGCCAGGAGATGGAGGAGTCATCTGTTGCACGCTGGAGGCTGGAGCCTGCAGATGGCATGGTTCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 11 transcripts: ENST00000447784.1 ENST00000653982.1 ENST00000660513.1 ENST00000663325.1 ENST00000663501.1 ENST00000663692.1 ENST00000664751.1 ENST00000665951.1 ENST00000668892.1 ENST00000669381.1 ENST00000671023.1 |
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| CDS GCA 90 bp | TCTCCTACCACTCCACCACTCTGGTCAAGCTGCAGTCTCTGTCTCTaGCACCAACTGCAGCGAGGTGAGCCACAGAACCATGCCATCTGC | + |
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Preference number: 5 (lower is better) Translates to: SPTTPPLWSSCSLCL*HQLQRGEPQNHAIC Trigger: GCAGATGGCATGGTTCTGTGGCTCACCTCGCTGCAGTTGGTGGCAGAGACAGAGACTGCAGCTTGACCAGAGTGGTGGAGTGGTAGGAGA 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000660513.1 ENST00000663501.1 |
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| CDS GCA 90 bp | ACTCCAACCACTCCACCACTCTGGTCAAGCTGCAGTCTCTGTCTCTaGCACCAACTGCAGCGAGGTGAGCCACAGAACCATGCCATCTGC | + |
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Preference number: 5 (lower is better) Translates to: TPTTPPLWSSCSLCL*HQLQRGEPQNHAIC Trigger: GCAGATGGCATGGTTCTGTGGCTCACCTCGCTGCAGTTGGTGGCAGAGACAGAGACTGCAGCTTGACCAGAGTGGTGGAGTGGTTGGAGT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664751.1 |
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| CDS GCA 90 bp | ACAATACTCACTCCACCACTCTGGTCAAGCTGCAGTCTCTGTCTCTaGCACCAACTGCAGCGAGGTGAGCCACAGAACCATGCCATCTGC | + |
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Preference number: 5 (lower is better) Translates to: TILTPPLWSSCSLCL*HQLQRGEPQNHAIC Trigger: GCAGATGGCATGGTTCTGTGGCTCACCTCGCTGCAGTTGGTGGCAGAGACAGAGACTGCAGCTTGACCAGAGTGGTGGAGTGAGTATTGT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000447784.1 ENST00000653982.1 ENST00000663325.1 ENST00000663692.1 ENST00000671023.1 |
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| CDS GCA 90 bp | TTGCTCATGCAGATGACAATACTCACTCCACCACTCTGGTCAAGCTaGAGTCTCTGTCTCTGCCACCAACTGCAGCGAGGTGAGCCACAG | + |
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Preference number: 5 (lower is better) Translates to: LLMQMTILTPPLWSS*SLCLCHQLQRGEPQ Trigger: CTGTGGCTCACCTCGCTGCAGTTGGTGGCAGAGACAGAGACTGCAGCTTGACCAGAGTGGTGGAGTGAGTATTGTCATCTGCATGAGCAA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000447784.1 ENST00000653982.1 ENST00000663325.1 ENST00000663692.1 ENST00000671023.1 |
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| CDS GCA 90 bp | ATACATATCACTCCACCACTCTGGTCAAGCTGCAGTCTCTGTCTCTaGCACCAACTGCAGCGAGGTGAGCCACAGAACCATGCCATCTGC | + |
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Preference number: 5 (lower is better) Translates to: IHITPPLWSSCSLCL*HQLQRGEPQNHAIC Trigger: GCAGATGGCATGGTTCTGTGGCTCACCTCGCTGCAGTTGGTGGCAGAGACAGAGACTGCAGCTTGACCAGAGTGGTGGAGTGATATGTAT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000665951.1 ENST00000668892.1 ENST00000669381.1 |
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| CDS GCA 90 bp | TGGAGTGCTCTTGAGATACATATCACTCCACCACTCTGGTCAAGCTaGAGTCTCTGTCTCTGCCACCAACTGCAGCGAGGTGAGCCACAG | + |
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Preference number: 5 (lower is better) Translates to: WSALEIHITPPLWSS*SLCLCHQLQRGEPQ Trigger: CTGTGGCTCACCTCGCTGCAGTTGGTGGCAGAGACAGAGACTGCAGCTTGACCAGAGTGGTGGAGTGATATGTATCTCAAGAGCACTCCA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000665951.1 ENST00000668892.1 ENST00000669381.1 |
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| CDS TCA 90 bp | TTGAAGTGGAGGATTGCAGGCAGAATCTTTGTTGTGGAGTGCTCTTaGGATACATATCACCTCCAGGAGGCCCCCGCAGACACTCTCCTA | + |
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Preference number: 5 (lower is better) Translates to: LKWRIAGRIFVVECS*DTYHLQEAPADTLL Trigger: TAGGAGAGTGTCTGCGGGGGCCTCCTGGAGGTGATATGTATCTCAAGAGCACTCCACAACAAAGATTCTGCCTGCAATCCTCCACTTCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000660513.1 ENST00000663501.1 |
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| CDS TCA 90 bp | GAAACGTGGGCAGGGAAGTATCACTATGAGCAGCGGGCTTCCTCTTaGATTGGTGCCTTCTATGAGCATCTACTCTGCTTATGTCTTGGC | + |
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Preference number: 5 (lower is better) Translates to: ETWAGKYHYEQRASS*IGAFYEHLLCLCLG Trigger: GCCAAGACATAAGCAGAGTAGATGCTCATAGAAGGCACCAATTCAAGAGGAAGCCCGCTGCTCATAGTGATACTTCCCTGCCCACGTTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669381.1 |
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| CDS CCA 90 bp | TTGCAGGCAGAATCTTTGTTGTGGAGTGCTCTTGAGATACATATCTaGGTGTGGTGGGAGGTACCTGTAATCCAGCTACTGAGGAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: LQAESLLWSALEIHI*VWWEVPVIQLLRRL Trigger: CAGCCTCCTCAGTAGCTGGATTACAGGTACCTCCCACCACACCCAGATATGTATCTCAAGAGCACTCCACAACAAAGATTCTGCCTGCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000663692.1 ENST00000664751.1 |
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| CDS TCA 90 bp | TTGAAGTGGAGGATTGCAGGCAGAATCTTTGTTGTGGAGTGCTCTTaGGATACATATCTGGGTGTGGTGGGAGGTACCTGTAATCCAGCT | + |
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Preference number: 5 (lower is better) Translates to: LKWRIAGRIFVVECS*DTYLGVVGGTCNPA Trigger: AGCTGGATTACAGGTACCTCCCACCACACCCAGATATGTATCTCAAGAGCACTCCACAACAAAGATTCTGCCTGCAATCCTCCACTTCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000663692.1 ENST00000664751.1 |
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| CDS GCA 90 bp | CTTGCGTTCTTTGTGGACCTTAGGGAATCACTTGAAGTGGAGGATTaGAGGCAGAATCTTTGTTGTGGAGTGCTCTTGAGATACATATCA | + |
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Preference number: 5 (lower is better) Translates to: LAFFVDLRESLEVED*RQNLCCGVLLRYIS Trigger: TGATATGTATCTCAAGAGCACTCCACAACAAAGATTCTGCCTGCAATCCTCCACTTCAAGTGATTCCCTAAGGTCCACAAAGAACGCAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669381.1 |
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| CDS GCA 90 bp | CAACATGGAGAATTGAGTCCCAGTTTGTCACACTTCACAAATCACTaGTGCTTACATTTAGAAGCAAGTCCCAAGGCTAAACCTGTTGTC | + |
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Preference number: 5 (lower is better) Translates to: QHGELSPSLSHFTNH*CLHLEASPKAKPVV Trigger: GACAACAGGTTTAGCCTTGGGACTTGCTTCTAAATGTAAGCAGCAGTGATTTGTGAAGTGTGACAAACTGGGACTCAATTCTCCATGTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669381.1 |
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| CDS GCA 90 bp | CATGGAGAATTGAGTCCCAGTTTGTCACACTTCACAAATCACTGCTaGTTACATTTAGAAGCAAGTCCCAAGGCTAAACCTGTTGTCAAA | + |
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Preference number: 5 (lower is better) Translates to: HGELSPSLSHFTNHC*LHLEASPKAKPVVK Trigger: TTTGACAACAGGTTTAGCCTTGGGACTTGCTTCTAAATGTAAGCAGCAGTGATTTGTGAAGTGTGACAAACTGGGACTCAATTCTCCATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669381.1 |
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| CDS TCA 72 bp | GCCATCTGCAGGCTCCAGCCTCCAGCGTGCAACAGATaGCTCCTCCATCTCCTGGCTCGAAGCAACTGGGTG | + |
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Preference number: 6 (lower is better) Translates to: AICRLQPPACNR*LLHLLARSNWV Trigger: CACCCAGTTGCTTCGAGCCAGGAGATGGAGGAGTCATCTGTTGCACGCTGGAGGCTGGAGCCTGCAGATGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 11 transcripts: ENST00000447784.1 ENST00000653982.1 ENST00000660513.1 ENST00000663325.1 ENST00000663501.1 ENST00000663692.1 ENST00000664751.1 ENST00000665951.1 ENST00000668892.1 ENST00000669381.1 ENST00000671023.1 |
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| CDS CCA 72 bp | GGCCCCCGCAGACACTCTCCTACCACTCCACCACTCTaGTCAAGCTGCAGTCTCTGTCTCTGCCACCAACTG | + |
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Preference number: 6 (lower is better) Translates to: GPRRHSPTTPPL*SSCSLCLCHQL Trigger: CAGTTGGTGGCAGAGACAGAGACTGCAGCTTGACCAGAGTGGTGGAGTGGTAGGAGAGTGTCTGCGGGGGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000660513.1 ENST00000663501.1 |
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| CDS TCA 72 bp | CCAAGCTGCAACCTCCATCACCTCCACCAACCGCAGTaGGGTGAGCCTAGATACCACAGGCTCAAGCCGCCA | + |
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Preference number: 6 (lower is better) Translates to: PSCNLHHLHQPQ*GEPRYHRLKPP Trigger: TGGCGGCTTGAGCCTGTGGTATCTAGGCTCACCTCACTGCGGTTGGTGGAGGTGATGGAGGTTGCAGCTTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 11 transcripts: ENST00000447784.1 ENST00000653982.1 ENST00000660513.1 ENST00000663325.1 ENST00000663501.1 ENST00000663692.1 ENST00000664751.1 ENST00000665951.1 ENST00000668892.1 ENST00000669381.1 ENST00000671023.1 |
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| CDS GCA 72 bp | CCTGGCTCGAAGCAACTGGGTGGTAAAAGCCAGACGTaGCCTGCCACCTTTCTACCATGCTGGCCAAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: PGSKQLGGKSQT*PATFLPCWPSC Trigger: GCAGCTTGGCCAGCATGGTAGAAAGGTGGCAGGGCACGTCTGGCTTTTACCACCCAGTTGCTTCGAGCCAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000653982.1 ENST00000660513.1 ENST00000663325.1 ENST00000663692.1 ENST00000664751.1 ENST00000668892.1 ENST00000669381.1 ENST00000671023.1 |
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| CDS GCA 72 bp | CACTGCACTCCAACCACTCCACCACTCTGGTCAAGCTaGAGTCTCTGTCTCTGCCACCAACTGCAGCGAGGT | + |
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Preference number: 6 (lower is better) Translates to: HCTPTTPPLWSS*SLCLCHQLQRG Trigger: ACCTCGCTGCAGTTGGTGGCAGAGACAGAGACTGCAGCTTGACCAGAGTGGTGGAGTGGTTGGAGTGCAGTG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664751.1 |
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| CDS CCA 72 bp | AAAAGCCAGACGTGCCCTGCCACCTTTCTACCATGCTaGCCAAGCTGCAACCTCCATCACCTCCACCAACCG | + |
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Preference number: 6 (lower is better) Translates to: KSQTCPATFLPC*PSCNLHHLHQP Trigger: CGGTTGGTGGAGGTGATGGAGGTTGCAGCTTGGCCAGCATGGTAGAAAGGTGGCAGGGCACGTCTGGCTTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000653982.1 ENST00000660513.1 ENST00000663325.1 ENST00000663692.1 ENST00000664751.1 ENST00000668892.1 ENST00000669381.1 ENST00000671023.1 |
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| CDS GCA 72 bp | TCTGGTCAAGCTGCAGTCTCTGTCTCTGCCACCAACTaGAGCGAGGTGAGCCACAGAACCATGCCATCTGCA | + |
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Preference number: 6 (lower is better) Translates to: SGQAAVSVSATN*SEVSHRTMPSA Trigger: TGCAGATGGCATGGTTCTGTGGCTCACCTCGCTGCAGTTGGTGGCAGAGACAGAGACTGCAGCTTGACCAGA 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 11 transcripts: ENST00000447784.1 ENST00000653982.1 ENST00000660513.1 ENST00000663325.1 ENST00000663501.1 ENST00000663692.1 ENST00000664751.1 ENST00000665951.1 ENST00000668892.1 ENST00000669381.1 ENST00000671023.1 |
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| CDS GCA 72 bp | ACTCCACCACTCTGGTCAAGCTGCAGTCTCTGTCTCTaGCACCAACTGCAGCGAGGTGAGCCACAGAACCAT | + |
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Preference number: 6 (lower is better) Translates to: TPPLWSSCSLCL*HQLQRGEPQNH Trigger: ATGGTTCTGTGGCTCACCTCGCTGCAGTTGGTGGCAGAGACAGAGACTGCAGCTTGACCAGAGTGGTGGAGT 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 11 transcripts: ENST00000447784.1 ENST00000653982.1 ENST00000660513.1 ENST00000663325.1 ENST00000663501.1 ENST00000663692.1 ENST00000664751.1 ENST00000665951.1 ENST00000668892.1 ENST00000669381.1 ENST00000671023.1 |
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| CDS CCA 72 bp | AGATCATGCCACTGCACTCCAACCACTCCACCACTCTaGTCAAGCTGCAGTCTCTGTCTCTGCCACCAACTG | + |
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Preference number: 6 (lower is better) Translates to: RSCHCTPTTPPL*SSCSLCLCHQL Trigger: CAGTTGGTGGCAGAGACAGAGACTGCAGCTTGACCAGAGTGGTGGAGTGGTTGGAGTGCAGTGGCATGATCT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664751.1 |
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| CDS CCA 72 bp | AGAAGAGGTGCTGCACTGCCCAAGTGTACAGAAACGTaGGCAGGGAAGTATCACTATGAGCAGCGGGCTTCC | + |
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Preference number: 6 (lower is better) Translates to: RRGAALPKCTET*AGKYHYEQRAS Trigger: GGAAGCCCGCTGCTCATAGTGATACTTCCCTGCCCACGTTTCTGTACACTTGGGCAGTGCAGCACCTCTTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669381.1 |
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| CDS TCA 72 bp | AGGATTGCAGGCAGAATCTTTGTTGTGGAGTGCTCTTaGGATACATATCACCTCCAGGAGGCCCCCGCAGAC | + |
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Preference number: 6 (lower is better) Translates to: RIAGRIFVVECS*DTYHLQEAPAD Trigger: GTCTGCGGGGGCCTCCTGGAGGTGATATGTATCTCAAGAGCACTCCACAACAAAGATTCTGCCTGCAATCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000660513.1 ENST00000663501.1 |
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| CDS GCA 72 bp | CTTGAGATACATATCACTCCACCACTCTGGTCAAGCTaGAGTCTCTGTCTCTGCCACCAACTGCAGCGAGGT | + |
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Preference number: 6 (lower is better) Translates to: LEIHITPPLWSS*SLCLCHQLQRG Trigger: ACCTCGCTGCAGTTGGTGGCAGAGACAGAGACTGCAGCTTGACCAGAGTGGTGGAGTGATATGTATCTCAAG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000665951.1 ENST00000668892.1 ENST00000669381.1 |
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| CDS CAA 72 bp | GAGGATTGCAGGCAGAATCTTTGTTGTGGAGTGCTCTaGAGATACATATCACCTCCAGGAGGCCCCCGCAGA | + |
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Preference number: 6 (lower is better) Translates to: EDCRQNLCCGVL*RYISPPGGPRR Trigger: TCTGCGGGGGCCTCCTGGAGGTGATATGTATCTCAAGAGCACTCCACAACAAAGATTCTGCCTGCAATCCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000660513.1 ENST00000663501.1 |
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| CDS CAA 90 bp | CTTGAAGTGGAGGATTGCAGGCAGAATCTTTGTTGTGGAGTGCTCTaGAGATACATATCACCTCCAGGAGGCCCCCGCAGACACTCTCCT | + |
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Preference number: 6 (lower is better) Translates to: LEVEDCRQNLCCGVL*RYISPPGGPRRHSP Trigger: AGGAGAGTGTCTGCGGGGGCCTCCTGGAGGTGATATGTATCTCAAGAGCACTCCACAACAAAGATTCTGCCTGCAATCCTCCACTTCAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000660513.1 ENST00000663501.1 |
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| CDS CAA 90 bp | CGTGGGCAGGGAAGTATCACTATGAGCAGCGGGCTTCCTCTTGAATaGGTGCCTTCTATGAGCATCTACTCTGCTTATGTCTTGGCCACA | + |
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Preference number: 6 (lower is better) Translates to: RGQGSITMSSGLPLE*VPSMSIYSAYVLAT Trigger: TGTGGCCAAGACATAAGCAGAGTAGATGCTCATAGAAGGCACCAATTCAAGAGGAAGCCCGCTGCTCATAGTGATACTTCCCTGCCCACG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669381.1 |
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| CDS TCA 72 bp | CAAGTGTACAGAAACGTGGGCAGGGAAGTATCACTATaGGCAGCGGGCTTCCTCTTGAATTGGTGCCTTCTA | + |
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Preference number: 6 (lower is better) Translates to: QVYRNVGREVSL*AAGFLLNWCLL Trigger: TAGAAGGCACCAATTCAAGAGGAAGCCCGCTGCTCATAGTGATACTTCCCTGCCCACGTTTCTGTACACTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669381.1 |
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| CDS CAA 72 bp | GAGGATTGCAGGCAGAATCTTTGTTGTGGAGTGCTCTaGAGATACATATCTGGGTGTGGTGGGAGGTACCTG | + |
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Preference number: 6 (lower is better) Translates to: EDCRQNLCCGVL*RYISGCGGRYL Trigger: CAGGTACCTCCCACCACACCCAGATATGTATCTCAAGAGCACTCCACAACAAAGATTCTGCCTGCAATCCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000663692.1 ENST00000664751.1 |
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| CDS TCA 72 bp | AGGATTGCAGGCAGAATCTTTGTTGTGGAGTGCTCTTaGGATACATATCTGGGTGTGGTGGGAGGTACCTGT | + |
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Preference number: 6 (lower is better) Translates to: RIAGRIFVVECS*DTYLGVVGGTC Trigger: ACAGGTACCTCCCACCACACCCAGATATGTATCTCAAGAGCACTCCACAACAAAGATTCTGCCTGCAATCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000663692.1 ENST00000664751.1 |
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| CDS TCA 72 bp | GCAGGGAAGTATCACTATGAGCAGCGGGCTTCCTCTTaGATTGGTGCCTTCTATGAGCATCTACTCTGCTTA | + |
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Preference number: 6 (lower is better) Translates to: AGKYHYEQRASS*IGAFYEHLLCL Trigger: TAAGCAGAGTAGATGCTCATAGAAGGCACCAATTCAAGAGGAAGCCCGCTGCTCATAGTGATACTTCCCTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669381.1 |
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| CDS CCA 72 bp | CTGTGTTACACAGGTTTCCTGGAACAGACCTTGAAGTaGAGGATTGCAGGCAGAATCTTTGTTGTGGAGTGC | + |
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Preference number: 6 (lower is better) Translates to: LCYTGFLEQTLK*RIAGRIFVVEC Trigger: GCACTCCACAACAAAGATTCTGCCTGCAATCCTCCACTTCAAGGTCTGTTCCAGGAAACCTGTGTAACACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000660513.1 ENST00000663325.1 ENST00000663501.1 ENST00000663692.1 ENST00000664751.1 ENST00000665951.1 ENST00000668892.1 ENST00000671023.1 |
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| CDS CAA 90 bp | TTTCATTGCTGCCTCTTGCGTTCTTTGTGGACCTTAGGGAATCACTaGAAGTGGAGGATTGCAGGCAGAATCTTTGTTGTGGAGTGCTCT | + |
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Preference number: 6 (lower is better) Translates to: FHCCLLRSLWTLGNH*KWRIAGRIFVVECS Trigger: AGAGCACTCCACAACAAAGATTCTGCCTGCAATCCTCCACTTCAAGTGATTCCCTAAGGTCCACAAAGAACGCAAGAGGCAGCAATGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669381.1 |
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| CDS CAA 90 bp | CCTCTTGAATTGGTGCCTTCTATGAGCATCTACTCTGCTTATGTCTaGGCCACATTGTCACTTAGCACAGCTTTCATTGCTGCCTCTTGC | + |
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Preference number: 6 (lower is better) Translates to: PLELVPSMSIYSAYV*ATLSLSTAFIAASC Trigger: GCAAGAGGCAGCAATGAAAGCTGTGCTAAGTGACAATGTGGCCAAGACATAAGCAGAGTAGATGCTCATAGAAGGCACCAATTCAAGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669381.1 |
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| CDS CCA 72 bp | GAATCTTTGTTGTGGAGTGCTCTTGAGATACATATCTaGGTGTGGTGGGAGGTACCTGTAATCCAGCTACTG | + |
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Preference number: 6 (lower is better) Translates to: ESLLWSALEIHI*VWWEVPVIQLL Trigger: CAGTAGCTGGATTACAGGTACCTCCCACCACACCCAGATATGTATCTCAAGAGCACTCCACAACAAAGATTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000663692.1 ENST00000664751.1 |
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| CDS CAA 72 bp | TGCCTCTTGCGTTCTTTGTGGACCTTAGGGAATCACTaGAAGTGGAGGATTGCAGGCAGAATCTTTGTTGTG | + |
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Preference number: 6 (lower is better) Translates to: CLLRSLWTLGNH*KWRIAGRIFVV Trigger: CACAACAAAGATTCTGCCTGCAATCCTCCACTTCAAGTGATTCCCTAAGGTCCACAAAGAACGCAAGAGGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669381.1 |
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| CDS CAA 72 bp | GGAAGTATCACTATGAGCAGCGGGCTTCCTCTTGAATaGGTGCCTTCTATGAGCATCTACTCTGCTTATGTC | + |
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Preference number: 6 (lower is better) Translates to: GSITMSSGLPLE*VPSMSIYSAYV Trigger: GACATAAGCAGAGTAGATGCTCATAGAAGGCACCAATTCAAGAGGAAGCCCGCTGCTCATAGTGATACTTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669381.1 |
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| CDS CAA 90 bp | ACTCTGCTTATGTCTTGGCCACATTGTCACTTAGCACAGCTTTCATaGCTGCCTCTTGCGTTCTTTGTGGACCTTAGGGAATCACTTGAA | + |
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Preference number: 6 (lower is better) Translates to: TLLMSWPHCHLAQLS*LPLAFFVDLRESLE Trigger: TTCAAGTGATTCCCTAAGGTCCACAAAGAACGCAAGAGGCAGCAATGAAAGCTGTGCTAAGTGACAATGTGGCCAAGACATAAGCAGAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669381.1 |
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| CDS CAA 90 bp | TTGGTGCCTTCTATGAGCATCTACTCTGCTTATGTCTTGGCCACATaGTCACTTAGCACAGCTTTCATTGCTGCCTCTTGCGTTCTTTGT | + |
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Preference number: 6 (lower is better) Translates to: LVPSMSIYSAYVLAT*SLSTAFIAASCVLC Trigger: ACAAAGAACGCAAGAGGCAGCAATGAAAGCTGTGCTAAGTGACAATGTGGCCAAGACATAAGCAGAGTAGATGCTCATAGAAGGCACCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669381.1 |
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| CDS TCA 72 bp | CATAACTGTGTTACACAGGTTTCCTGGAACAGACCTTaGAGTGGAGGATTGCAGGCAGAATCTTTGTTGTGG | + |
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Preference number: 6 (lower is better) Translates to: HNCVTQVSWNRP*SGGLQAESLLW Trigger: CCACAACAAAGATTCTGCCTGCAATCCTCCACTTCAAGGTCTGTTCCAGGAAACCTGTGTAACACAGTTATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000660513.1 ENST00000663325.1 ENST00000663501.1 ENST00000663692.1 ENST00000664751.1 ENST00000665951.1 ENST00000668892.1 ENST00000671023.1 |
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| CDS GCA 72 bp | TTTGTGGACCTTAGGGAATCACTTGAAGTGGAGGATTaGAGGCAGAATCTTTGTTGTGGAGTGCTCTTGAGA | + |
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Preference number: 6 (lower is better) Translates to: FVDLRESLEVED*RQNLCCGVLLR Trigger: TCTCAAGAGCACTCCACAACAAAGATTCTGCCTGCAATCCTCCACTTCAAGTGATTCCCTAAGGTCCACAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669381.1 |
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| CDS CAA 72 bp | TTGGTGCCTTCTATGAGCATCTACTCTGCTTATGTCTaGGCCACATTGTCACTTAGCACAGCTTTCATTGCT | + |
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Preference number: 6 (lower is better) Translates to: LVPSMSIYSAYV*ATLSLSTAFIA Trigger: AGCAATGAAAGCTGTGCTAAGTGACAATGTGGCCAAGACATAAGCAGAGTAGATGCTCATAGAAGGCACCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669381.1 |
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| CDS GCA 72 bp | GAATTGAGTCCCAGTTTGTCACACTTCACAAATCACTaGTGCTTACATTTAGAAGCAAGTCCCAAGGCTAAA | + |
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Preference number: 6 (lower is better) Translates to: ELSPSLSHFTNH*CLHLEASPKAK Trigger: TTTAGCCTTGGGACTTGCTTCTAAATGTAAGCAGCAGTGATTTGTGAAGTGTGACAAACTGGGACTCAATTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669381.1 |
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| CDS CAA 72 bp | GAGGATTGCAGGCAGAATCTTTGTTGTGGAGTGCTCTaGAGATACATATCAAAGGTAGTAATACCAGAAATA | + |
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Preference number: 6 (lower is better) Translates to: EDCRQNLCCGVL*RYISKVVIPEI Trigger: TATTTCTGGTATTACTACCTTTGATATGTATCTCAAGAGCACTCCACAACAAAGATTCTGCCTGCAATCCTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671023.1 |
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