Pregenerated sensors for LINC00404 (Homo sapiens)
Ensembl gene IDs: ENSG00000229520Ensembl transcript IDs: ENST00000418660.1
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GCAGCTCCGCCGGTCACTCAGGCAGAACGGGGTATGCAAATGGCCTaGAGAGGCCGAGGCCGAACACTGCGCCCATTGTCCCGGGCGCTC | + |
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Preference number: 5 (lower is better) Translates to: AAPPVTQAERGMQMA*RGRGRTLRPLSRAL Trigger: GAGCGCCCGGGACAATGGGCGCAGTGTTCGGCCTCGGCCTCTCCAGGCCATTTGCATACCCCGTTCTGCCTGAGTGACCGGCGGAGCTGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000418660.1 |
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| CDS GCA 90 bp | CAGAACGGGGTATGCAAATGGCCTGGAGAGGCCGAGGCCGAACACTaGGCCCATTGTCCCGGGCGCTCAAAGCGCCGAGCAGCTGCGCAG | + |
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Preference number: 5 (lower is better) Translates to: QNGVCKWPGEAEAEH*AHCPGRSKRRAAAQ Trigger: CTGCGCAGCTGCTCGGCGCTTTGAGCGCCCGGGACAATGGGCGCAGTGTTCGGCCTCGGCCTCTCCAGGCCATTTGCATACCCCGTTCTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000418660.1 |
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| CDS CCA 90 bp | CCGCGCGCCCGCGCTGTCCCAGCCGGAGCTGCCCTGGCTGGTGATTaGAGGTTTAACGTCCGGAATTCAGGCGCTTCTGCAGCTCAGATT | + |
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Preference number: 5 (lower is better) Translates to: PRARAVPAGAALAGD*RFNVRNSGASAAQI Trigger: AATCTGAGCTGCAGAAGCGCCTGAATTCCGGACGTTAAACCTCCAATCACCAGCCAGGGCAGCTCCGGCTGGGACAGCGCGGGCGCGCGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000418660.1 |
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| CDS CCA 90 bp | CATTGTCCCGGGCGCTCAAAGCGCCGAGCAGCTGCGCAGACTTTCTaGGCTCGGACCCTCGGCCGCCACGCTAATGTCATCATTGCAAAA | + |
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Preference number: 5 (lower is better) Translates to: HCPGRSKRRAAAQTF*ARTLGRHANVIIAK Trigger: TTTTGCAATGATGACATTAGCGTGGCGGCCGAGGGTCCGAGCCCAGAAAGTCTGCGCAGCTGCTCGGCGCTTTGAGCGCCCGGGACAATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000418660.1 |
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| CDS TCA 90 bp | TTCAAAATGGTGTTTCTGGCTCTTGTCATCTCGCTCATCTTGAAGTaGCCCGTGGACAATGCTGCTCCCTGCCGCAGCTCCGCCGGTCAC | + |
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Preference number: 5 (lower is better) Translates to: FKMVFLALVISLILK*PVDNAAPCRSSAGH Trigger: GTGACCGGCGGAGCTGCGGCAGGGAGCAGCATTGTCCACGGGTCACTTCAAGATGAGCGAGATGACAAGAGCCAGAAACACCATTTTGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000418660.1 |
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| CDS TCA 90 bp | CCCTCGGCCGCCACGCTAATGTCATCATTGCAAAACATCAGATTTTaGGAACTATGCAGTCTGAATTCATTAGCAGCCTTCTCGGCGAAG | + |
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Preference number: 5 (lower is better) Translates to: PSAATLMSSLQNIRF*ELCSLNSLAAFSAK Trigger: CTTCGCCGAGAAGGCTGCTAATGAATTCAGACTGCATAGTTCTCAAAATCTGATGTTTTGCAATGATGACATTAGCGTGGCGGCCGAGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000418660.1 |
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| CDS GCA 72 bp | CGCCCATTGTCCCGGGCGCTCAAAGCGCCGAGCAGCTaGGCAGACTTTCTGGGCTCGGACCCTCGGCCGCCA | + |
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Preference number: 6 (lower is better) Translates to: RPLSRALKAPSS*ADFLGSDPRPP Trigger: TGGCGGCCGAGGGTCCGAGCCCAGAAAGTCTGCGCAGCTGCTCGGCGCTTTGAGCGCCCGGGACAATGGGCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000418660.1 |
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| CDS CAA 72 bp | ATGGCCTGGAGAGGCCGAGGCCGAACACTGCGCCCATaGTCCCGGGCGCTCAAAGCGCCGAGCAGCTGCGCA | + |
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Preference number: 6 (lower is better) Translates to: MAWRGRGRTLRP*SRALKAPSSCA Trigger: TGCGCAGCTGCTCGGCGCTTTGAGCGCCCGGGACAATGGGCGCAGTGTTCGGCCTCGGCCTCTCCAGGCCAT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000418660.1 |
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| CDS CCA 72 bp | GGGCGCTCAAAGCGCCGAGCAGCTGCGCAGACTTTCTaGGCTCGGACCCTCGGCCGCCACGCTAATGTCATC | + |
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Preference number: 6 (lower is better) Translates to: GRSKRRAAAQTF*ARTLGRHANVI Trigger: GATGACATTAGCGTGGCGGCCGAGGGTCCGAGCCCAGAAAGTCTGCGCAGCTGCTCGGCGCTTTGAGCGCCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000418660.1 |
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| CDS GCA 72 bp | GTATGCAAATGGCCTGGAGAGGCCGAGGCCGAACACTaGGCCCATTGTCCCGGGCGCTCAAAGCGCCGAGCA | + |
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Preference number: 6 (lower is better) Translates to: VCKWPGEAEAEH*AHCPGRSKRRA Trigger: TGCTCGGCGCTTTGAGCGCCCGGGACAATGGGCGCAGTGTTCGGCCTCGGCCTCTCCAGGCCATTTGCATAC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000418660.1 |
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| CDS CAA 90 bp | GGTATGCAAATGGCCTGGAGAGGCCGAGGCCGAACACTGCGCCCATaGTCCCGGGCGCTCAAAGCGCCGAGCAGCTGCGCAGACTTTCTG | + |
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Preference number: 6 (lower is better) Translates to: GMQMAWRGRGRTLRP*SRALKAPSSCADFL Trigger: CAGAAAGTCTGCGCAGCTGCTCGGCGCTTTGAGCGCCCGGGACAATGGGCGCAGTGTTCGGCCTCGGCCTCTCCAGGCCATTTGCATACC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000418660.1 |
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| CDS CCA 72 bp | CCGGTCACTCAGGCAGAACGGGGTATGCAAATGGCCTaGAGAGGCCGAGGCCGAACACTGCGCCCATTGTCC | + |
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Preference number: 6 (lower is better) Translates to: PVTQAERGMQMA*RGRGRTLRPLS Trigger: GGACAATGGGCGCAGTGTTCGGCCTCGGCCTCTCCAGGCCATTTGCATACCCCGTTCTGCCTGAGTGACCGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000418660.1 |
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| CDS GCA 72 bp | TGTCATCTCGCTCATCTTGAAGTGACCCGTGGACAATaGTGCTCCCTGCCGCAGCTCCGCCGGTCACTCAGG | + |
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Preference number: 6 (lower is better) Translates to: CHLAHLEVTRGQ*CSLPQLRRSLR Trigger: CCTGAGTGACCGGCGGAGCTGCGGCAGGGAGCAGCATTGTCCACGGGTCACTTCAAGATGAGCGAGATGACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000418660.1 |
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| CDS TCA 72 bp | GTGTTTCTGGCTCTTGTCATCTCGCTCATCTTGAAGTaGCCCGTGGACAATGCTGCTCCCTGCCGCAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: VFLALVISLILK*PVDNAAPCRSS Trigger: GGAGCTGCGGCAGGGAGCAGCATTGTCCACGGGTCACTTCAAGATGAGCGAGATGACAAGAGCCAGAAACAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000418660.1 |
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| CDS GCA 72 bp | AACGTCCGGAATTCAGGCGCTTCTGCAGCTCAGATTTaGCGGCCAAGGGGCCTCAGTTGCAACTTTTCAAAA | + |
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Preference number: 6 (lower is better) Translates to: NVRNSGASAAQI*RPRGLSCNFSK Trigger: TTTTGAAAAGTTGCAACTGAGGCCCCTTGGCCGGCAAATCTGAGCTGCAGAAGCGCCTGAATTCCGGACGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000418660.1 |
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| CDS CAA 90 bp | ACCCTCGGCCGCCACGCTAATGTCATCATTGCAAAACATCAGATTTaGAGAACTATGCAGTCTGAATTCATTAGCAGCCTTCTCGGCGAA | + |
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Preference number: 6 (lower is better) Translates to: TLGRHANVIIAKHQI*RTMQSEFISSLLGE Trigger: TTCGCCGAGAAGGCTGCTAATGAATTCAGACTGCATAGTTCTCAAAATCTGATGTTTTGCAATGATGACATTAGCGTGGCGGCCGAGGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000418660.1 |
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| CDS CAA 72 bp | CGCCACGCTAATGTCATCATTGCAAAACATCAGATTTaGAGAACTATGCAGTCTGAATTCATTAGCAGCCTT | + |
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Preference number: 6 (lower is better) Translates to: RHANVIIAKHQI*RTMQSEFISSL Trigger: AAGGCTGCTAATGAATTCAGACTGCATAGTTCTCAAAATCTGATGTTTTGCAATGATGACATTAGCGTGGCG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000418660.1 |
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