Pregenerated sensors for LINC00400 (Homo sapiens)
Ensembl gene IDs: ENSG00000229928Ensembl transcript IDs: ENST00000425609.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCCAAGTTGGAGGTTGGAAAACTAAGATCAATAGGCATGATCCCATaGCAAACGCTGCTGTCTGGCTGTGCTCCAAATCGCTCTCCGCCT | + |
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Preference number: 5 (lower is better) Translates to: SKLEVGKLRSIGMIP*QTLLSGCAPNRSPP Trigger: AGGCGGAGAGCGATTTGGAGCACAGCCAGACAGCAGCGTTTGCCATGGGATCATGCCTATTGATCTTAGTTTTCCAACCTCCAACTTGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000425609.1 |
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| CDS CCA 90 bp | CATAATTTATTCATAACCTGCTACTCCCCAGGAAGGGAAGACAGATaGTTTATCTATTTCCAAGTTGGAGGTTGGAAAACTAAGATCAAT | + |
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Preference number: 5 (lower is better) Translates to: HNLFITCYSPGREDR*FIYFQVGGWKTKIN Trigger: ATTGATCTTAGTTTTCCAACCTCCAACTTGGAAATAGATAAACCATCTGTCTTCCCTTCCTGGGGAGTAGCAGGTTATGAATAAATTATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000425609.1 |
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| CDS GCA 72 bp | AGGCATGATCCCATGGCAAACGCTGCTGTCTGGCTGTaGTCCAAATCGCTCTCCGCCTTTGTCCTCCTCCCA | + |
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Preference number: 6 (lower is better) Translates to: RHDPMANAAVWL*SKSLSAFVLLP Trigger: TGGGAGGAGGACAAAGGCGGAGAGCGATTTGGAGCACAGCCAGACAGCAGCGTTTGCCATGGGATCATGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000425609.1 |
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| CDS CCA 72 bp | AGGGCAGAGAGCAGTGAGGGTCCAGCTAGAATAGGCTaGATGTCTGTAACACTTGCTGGGTGGCGGCAAGAC | + |
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Preference number: 6 (lower is better) Translates to: RAESSEGPARIG*MSVTLAGWRQD Trigger: GTCTTGCCGCCACCCAGCAAGTGTTACAGACATCCAGCCTATTCTAGCTGGACCCTCACTGCTCTCTGCCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000425609.1 |
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| CDS GCA 72 bp | GGCGGCAAGACATTTGCGTTGGACTCTTGCTTGTCATaGCTTGAGATTCCAATCACGTGCCAGCTGAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: GGKTFALDSCLS*LEIPITCQLRL Trigger: CAGCCTCAGCTGGCACGTGATTGGAATCTCAAGGCATGACAAGCAAGAGTCCAACGCAAATGTCTTGCCGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000425609.1 |
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| CDS CCA 72 bp | ATCAATAGGCATGATCCCATGGCAAACGCTGCTGTCTaGCTGTGCTCCAAATCGCTCTCCGCCTTTGTCCTC | + |
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Preference number: 6 (lower is better) Translates to: INRHDPMANAAV*LCSKSLSAFVL Trigger: GAGGACAAAGGCGGAGAGCGATTTGGAGCACAGCCAGACAGCAGCGTTTGCCATGGGATCATGCCTATTGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000425609.1 |
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| CDS TCA 72 bp | GCTTGTCATGCCTTGAGATTCCAATCACGTGCCAGCTaGGGCTGTAGTGTTAAGGGAAATGGCAGGAGACAT | + |
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Preference number: 6 (lower is better) Translates to: ACHALRFQSRAS*GCSVKGNGRRH Trigger: ATGTCTCCTGCCATTTCCCTTAACACTACAGCCTCAGCTGGCACGTGATTGGAATCTCAAGGCATGACAAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000425609.1 |
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| CDS CCA 72 bp | GAGGTTGGAAAACTAAGATCAATAGGCATGATCCCATaGCAAACGCTGCTGTCTGGCTGTGCTCCAAATCGC | + |
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Preference number: 6 (lower is better) Translates to: EVGKLRSIGMIP*QTLLSGCAPNR Trigger: GCGATTTGGAGCACAGCCAGACAGCAGCGTTTGCCATGGGATCATGCCTATTGATCTTAGTTTTCCAACCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000425609.1 |
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| CDS CAA 90 bp | GTGCCAGCTGAGGCTGTAGTGTTAAGGGAAATGGCAGGAGACATTTaGGATGTTGAGTTATGTTGGCTACTTCTTGAAGCTTTTGGCAAA | + |
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Preference number: 6 (lower is better) Translates to: VPAEAVVLREMAGDI*DVELCWLLLEAFGK Trigger: TTTGCCAAAAGCTTCAAGAAGTAGCCAACATAACTCAACATCCAAAATGTCTCCTGCCATTTCCCTTAACACTACAGCCTCAGCTGGCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000425609.1 |
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| CDS CCA 72 bp | TTCATAACCTGCTACTCCCCAGGAAGGGAAGACAGATaGTTTATCTATTTCCAAGTTGGAGGTTGGAAAACT | + |
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Preference number: 6 (lower is better) Translates to: FITCYSPGREDR*FIYFQVGGWKT Trigger: AGTTTTCCAACCTCCAACTTGGAAATAGATAAACCATCTGTCTTCCCTTCCTGGGGAGTAGCAGGTTATGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000425609.1 |
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| CDS CAA 72 bp | GAGGCTGTAGTGTTAAGGGAAATGGCAGGAGACATTTaGGATGTTGAGTTATGTTGGCTACTTCTTGAAGCT | + |
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Preference number: 6 (lower is better) Translates to: EAVVLREMAGDI*DVELCWLLLEA Trigger: AGCTTCAAGAAGTAGCCAACATAACTCAACATCCAAAATGTCTCCTGCCATTTCCCTTAACACTACAGCCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000425609.1 |
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