Pregenerated sensors for LINC00398 (Homo sapiens)
Ensembl gene IDs: ENSG00000237879Ensembl transcript IDs: ENST00000414407.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGACCTCCACGCCCGCCCATCTCCTCTGGGTTGCCCGGGCAATCCTaGAGGAGCCGAGGCTGGACGCAGCTGACCCCAACAGACAGGAGA | + |
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Preference number: 5 (lower is better) Translates to: GPPRPPISSGLPGQS*RSRGWTQLTPTDRR Trigger: TCTCCTGTCTGTTGGGGTCAGCTGCGTCCAGCCTCGGCTCCTGCAGGATTGCCCGGGCAACCCAGAGGAGATGGGCGGGCGTGGAGGTCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414407.1 |
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| CDS GCA 90 bp | GCATGGCGCAAGGTTCCAAGTAGGGTTCGCGGCGGGGAGGGCCCCTaGCGCAAAGGGACTCAGTGTTGTGCGAGGGAGGTGAAGTCGCTT | + |
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Preference number: 5 (lower is better) Translates to: AWRKVPSRVRGGEGP*RKGTQCCAREVKSL Trigger: AAGCGACTTCACCTCCCTCGCACAACACTGAGTCCCTTTGCGGCAGGGGCCCTCCCCGCCGCGAACCCTACTTGGAACCTTGCGCCATGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000414407.1 |
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| CDS CCA 90 bp | CCCATCTCCTCTGGGTTGCCCGGGCAATCCTGCAGGAGCCGAGGCTaGACGCAGCTGACCCCAACAGACAGGAGAAACAAGCCAGCACCA | + |
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Preference number: 5 (lower is better) Translates to: PISSGLPGQSCRSRG*TQLTPTDRRNKPAP Trigger: TGGTGCTGGCTTGTTTCTCCTGTCTGTTGGGGTCAGCTGCGTCCAGCCTCGGCTCCTGCAGGATTGCCCGGGCAACCCAGAGGAGATGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414407.1 |
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| CDS TCA 90 bp | GGGAGGGCCCCTGCCGCAAAGGGACTCAGTGTTGTGCGAGGGAGGTaGAGTCGCTTCTTGATCAGCCGTATTTCTTGCCTACACTTGACA | + |
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Preference number: 5 (lower is better) Translates to: GRAPAAKGLSVVRGR*SRFLISRISCLHLT Trigger: TGTCAAGTGTAGGCAAGAAATACGGCTGATCAAGAAGCGACTTCACCTCCCTCGCACAACACTGAGTCCCTTTGCGGCAGGGGCCCTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414407.1 |
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| CDS TCA 90 bp | CAACAGACAGGAGAAACAAGCCAGCACCACCGGAGAGAACCAGGCTaGAAGGGTGACCCAGGGCTTCCGTGGCCTAGAATGAGAGAGACA | + |
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Preference number: 5 (lower is better) Translates to: QQTGETSQHHRREPG*KGDPGLPWPRMRET Trigger: TGTCTCTCTCATTCTAGGCCACGGAAGCCCTGGGTCACCCTTTCAGCCTGGTTCTCTCCGGTGGTGCTGGCTTGTTTCTCCTGTCTGTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414407.1 |
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| CDS GCA 90 bp | CTGAAGTGTGCCCAGGGAATTACTCCATCATTTTCCTCAGTAGGTTaGTCTCCGCTGATGCTGGCTTCATTCCCGGGCTCAGGGAGGGTG | + |
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Preference number: 5 (lower is better) Translates to: LKCAQGITPSFSSVG*SPLMLASFPGSGRV Trigger: CACCCTCCCTGAGCCCGGGAATGAAGCCAGCATCAGCGGAGAGCAACCTACTGAGGAAAATGATGGAGTAATTCCCTGGGCACACTTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414407.1 |
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| CDS TCA 90 bp | GTGAAGGTTCCTGGCAGCAACTTGCTGACTTGGCTTGTTGTGGAATaGGGATGGAAAACTCCAGCAGCAATGAGGAGGCCCACTCACCAA | + |
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Preference number: 5 (lower is better) Translates to: VKVPGSNLLTWLVVE*GWKTPAAMRRPTHQ Trigger: TTGGTGAGTGGGCCTCCTCATTGCTGCTGGAGTTTTCCATCCTCATTCCACAACAAGCCAAGTCAGCAAGTTGCTGCCAGGAACCTTCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414407.1 |
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| CDS CCA 90 bp | TGTGTGTTTCCCCTCAGATCCCAAAGCACAAGGTGTGAAGGTTCCTaGCAGCAACTTGCTGACTTGGCTTGTTGTGGAATGAGGATGGAA | + |
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Preference number: 5 (lower is better) Translates to: CVFPLRSQSTRCEGS*QQLADLACCGMRME Trigger: TTCCATCCTCATTCCACAACAAGCCAAGTCAGCAAGTTGCTGCCAGGAACCTTCACACCTTGTGCTTTGGGATCTGAGGGGAAACACACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414407.1 |
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| CDS GCA 72 bp | AGGGAGGACCTCCACGCCCGCCCATCTCCTCTGGGTTaGCCGGGCAATCCTGCAGGAGCCGAGGCTGGACGC | + |
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Preference number: 6 (lower is better) Translates to: REDLHARPSPLG*PGNPAGAEAGR Trigger: GCGTCCAGCCTCGGCTCCTGCAGGATTGCCCGGGCAACCCAGAGGAGATGGGCGGGCGTGGAGGTCCTCCCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414407.1 |
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| CDS CAA 90 bp | AGGGTCATCCAGGGAGGACCTCCACGCCCGCCCATCTCCTCTGGGTaGCCCGGGCAATCCTGCAGGAGCCGAGGCTGGACGCAGCTGACC | + |
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Preference number: 6 (lower is better) Translates to: RVIQGGPPRPPISSG*PGQSCRSRGWTQLT Trigger: GGTCAGCTGCGTCCAGCCTCGGCTCCTGCAGGATTGCCCGGGCAACCCAGAGGAGATGGGCGGGCGTGGAGGTCCTCCCTGGATGACCCT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414407.1 |
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| CDS GCA 72 bp | CGCCCGCCCATCTCCTCTGGGTTGCCCGGGCAATCCTaGAGGAGCCGAGGCTGGACGCAGCTGACCCCAACA | + |
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Preference number: 6 (lower is better) Translates to: RPPISSGLPGQS*RSRGWTQLTPT Trigger: TGTTGGGGTCAGCTGCGTCCAGCCTCGGCTCCTGCAGGATTGCCCGGGCAACCCAGAGGAGATGGGCGGGCG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414407.1 |
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| CDS GCA 72 bp | AAGGTTCCAAGTAGGGTTCGCGGCGGGGAGGGCCCCTaGCGCAAAGGGACTCAGTGTTGTGCGAGGGAGGTG | + |
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Preference number: 6 (lower is better) Translates to: KVPSRVRGGEGP*RKGTQCCAREV Trigger: CACCTCCCTCGCACAACACTGAGTCCCTTTGCGGCAGGGGCCCTCCCCGCCGCGAACCCTACTTGGAACCTT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000414407.1 |
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| CDS TCA 72 bp | GGAGAAACAAGCCAGCACCACCGGAGAGAACCAGGCTaGAAGGGTGACCCAGGGCTTCCGTGGCCTAGAATG | + |
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Preference number: 6 (lower is better) Translates to: GETSQHHRREPG*KGDPGLPWPRM Trigger: CATTCTAGGCCACGGAAGCCCTGGGTCACCCTTTCAGCCTGGTTCTCTCCGGTGGTGCTGGCTTGTTTCTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414407.1 |
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| CDS CAA 72 bp | AGGGAGGTGAAGTCGCTTCTTGATCAGCCGTATTTCTaGCCTACACTTGACACCGTCACCAGCCCAGGCGCC | + |
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Preference number: 6 (lower is better) Translates to: REVKSLLDQPYF*PTLDTVTSPGA Trigger: GGCGCCTGGGCTGGTGACGGTGTCAAGTGTAGGCAAGAAATACGGCTGATCAAGAAGCGACTTCACCTCCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414407.1 |
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| CDS TCA 72 bp | CCTGCCGCAAAGGGACTCAGTGTTGTGCGAGGGAGGTaGAGTCGCTTCTTGATCAGCCGTATTTCTTGCCTA | + |
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Preference number: 6 (lower is better) Translates to: PAAKGLSVVRGR*SRFLISRISCL Trigger: TAGGCAAGAAATACGGCTGATCAAGAAGCGACTTCACCTCCCTCGCACAACACTGAGTCCCTTTGCGGCAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414407.1 |
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| CDS GCA 72 bp | GCCCAGGGAATTACTCCATCATTTTCCTCAGTAGGTTaGTCTCCGCTGATGCTGGCTTCATTCCCGGGCTCA | + |
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Preference number: 6 (lower is better) Translates to: AQGITPSFSSVG*SPLMLASFPGS Trigger: TGAGCCCGGGAATGAAGCCAGCATCAGCGGAGAGCAACCTACTGAGGAAAATGATGGAGTAATTCCCTGGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414407.1 |
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| CDS CAA 90 bp | GGAGACTGGGCCTTCTTGCAAAAGCCTGTTAAATTCCTAATGATGTaGAAATGGTGGGAAGGGTCATCCAGGGAGGACCTCCACGCCCGC | + |
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Preference number: 6 (lower is better) Translates to: GDWAFLQKPVKFLMM*KWWEGSSREDLHAR Trigger: GCGGGCGTGGAGGTCCTCCCTGGATGACCCTTCCCACCATTTCAACATCATTAGGAATTTAACAGGCTTTTGCAAGAAGGCCCAGTCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414407.1 |
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| CDS CAA 90 bp | TCCCAAAGCACAAGGTGTGAAGGTTCCTGGCAGCAACTTGCTGACTaGGCTTGTTGTGGAATGAGGATGGAAAACTCCAGCAGCAATGAG | + |
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Preference number: 6 (lower is better) Translates to: SQSTRCEGSWQQLAD*ACCGMRMENSSSNE Trigger: CTCATTGCTGCTGGAGTTTTCCATCCTCATTCCACAACAAGCCAAGTCAGCAAGTTGCTGCCAGGAACCTTCACACCTTGTGCTTTGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414407.1 |
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