Pregenerated sensors for LINC00397 (Homo sapiens)

Ensembl gene IDs: ENSG00000223404

Ensembl transcript IDs: ENST00000422074.2, ENST00000606785.1

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TTCTGTCTCAGGAGTGGCAGAGGCACAGGAAATTTTGACTATAAGTaGACCCACACAGCTCCAAGCCGAGTGGTTCAAGGGTCAACTGAA	+
Preference number: 5 (lower is better) Translates to: FCLRSGRGTGNFDYK*THTAPSRVVQGSTE Trigger: TTCAGTTGACCCTTGAACCACTCGGCTTGGAGCTGTGTGGGTTCACTTATAGTCAAAATTTCCTGTGCCTCTGCCACTCCTGAGACAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000606785.1
CDS TCA 90 bp	GGAAGTGGATCATCAGAAAGGTTTTCATCCTCGTCATCTTCAGGTTaGTTAGGCTTAGGAAGAGGAGGAATTAGAGGGATTACTCTTTCT	+
Preference number: 5 (lower is better) Translates to: GSGSSERFSSSSSSG*LGLGRGGIRGITLS Trigger: AGAAAGAGTAATCCCTCTAATTCCTCCTCTTCCTAAGCCTAATCAACCTGAAGATGACGAGGATGAAAACCTTTCTGATGATCCACTTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000606785.1
CDS CCA 90 bp	CAGGAAATTTTGACTATAAGTGAACCCACACAGCTCCAAGCCGAGTaGTTCAAGGGTCAACTGAACTACCTGTTTCATTTCTTAGAAAAT	+
Preference number: 5 (lower is better) Translates to: QEILTISEPTQLQAE*FKGQLNYLFHFLEN Trigger: ATTTTCTAAGAAATGAAACAGGTAGTTCAGTTGACCCTTGAACCACTCGGCTTGGAGCTGTGTGGGTTCACTTATAGTCAAAATTTCCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000606785.1
CDS CCA 90 bp	CCTCTTATTTTGTACACATTGCAACACTTTGAACTATTCATTAAATaGAAGTGGATCATCAGAAAGGTTTTCATCCTCGTCATCTTCAGG	+
Preference number: 5 (lower is better) Translates to: PLILYTLQHFELFIK*KWIIRKVFILVIFR Trigger: CCTGAAGATGACGAGGATGAAAACCTTTCTGATGATCCACTTCCATTTAATGAATAGTTCAAAGTGTTGCAATGTGTACAAAATAAGAGG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000422074.2 ENST00000606785.1
CDS TCA 72 bp	TCATCAGAAAGGTTTTCATCCTCGTCATCTTCAGGTTaGTTAGGCTTAGGAAGAGGAGGAATTAGAGGGATT	+
Preference number: 6 (lower is better) Translates to: SSERFSSSSSSG*LGLGRGGIRGI Trigger: AATCCCTCTAATTCCTCCTCTTCCTAAGCCTAATCAACCTGAAGATGACGAGGATGAAAACCTTTCTGATGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000606785.1
CDS CAA 90 bp	TCAAAGGCACAGACACTCCTCTTATTTTGTACACATTGCAACACTTaGAACTATTCATTAAATGGAAGTGGATCATCAGAAAGGTTTTCA	+
Preference number: 6 (lower is better) Translates to: SKAQTLLLFCTHCNT*NYSLNGSGSSERFS Trigger: TGAAAACCTTTCTGATGATCCACTTCCATTTAATGAATAGTTCAAAGTGTTGCAATGTGTACAAAATAAGAGGAGTGTCTGTGCCTTTGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000422074.2 ENST00000606785.1
CDS CAA 90 bp	TTCTACAAACATTCACCTTTCAAAGGCACAGACACTCCTCTTATTTaGTACACATTGCAACACTTTGAACTATTCATTAAATGGAAGTGG	+
Preference number: 6 (lower is better) Translates to: FYKHSPFKGTDTPLI*YTLQHFELFIKWKW Trigger: CCACTTCCATTTAATGAATAGTTCAAAGTGTTGCAATGTGTACAAAATAAGAGGAGTGTCTGTGCCTTTGAAAGGTGAATGTTTGTAGAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422074.2
CDS CCA 72 bp	ACATTGCAACACTTTGAACTATTCATTAAATGGAAGTaGATCATCAGAAAGGTTTTCATCCTCGTCATCTTC	+
Preference number: 6 (lower is better) Translates to: TLQHFELFIKWK*IIRKVFILVIF Trigger: GAAGATGACGAGGATGAAAACCTTTCTGATGATCCACTTCCATTTAATGAATAGTTCAAAGTGTTGCAATGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000422074.2 ENST00000606785.1
CDS CAA 72 bp	CATTCACCTTTCAAAGGCACAGACACTCCTCTTATTTaGTACACATTGCAACACTTTGAACTATTCATTAAA	+
Preference number: 6 (lower is better) Translates to: HSPFKGTDTPLI*YTLQHFELFIK Trigger: TTTAATGAATAGTTCAAAGTGTTGCAATGTGTACAAAATAAGAGGAGTGTCTGTGCCTTTGAAAGGTGAATG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422074.2