Pregenerated sensors for LINC00393 (Homo sapiens)
Ensembl gene IDs: ENSG00000224853Ensembl transcript IDs: ENST00000443621.1, ENST00000452852.2, ENST00000647940.1, ENST00000648624.1, ENST00000648903.1, ENST00000649189.1, ENST00000649254.1, ENST00000649507.2, ENST00000649860.1, ENST00000650209.1
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AAGATCAATGAAGAATACCCTGTGCTCTTCCACCCGCTTTTCTATTaGGTCCGCCCCTGTCAGGTCTGGCGGCGCCCTCACGGTCTGGCA | + |
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Preference number: 5 (lower is better) Translates to: KINEEYPVLFHPLFY*VRPCQVWRRPHGLA Trigger: TGCCAGACCGTGAGGGCGCCGCCAGACCTGACAGGGGCGGACCCAATAGAAAAGCGGGTGGAAGAGCACAGGGTATTCTTCATTGATCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649860.1 |
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| CDS GCA 90 bp | CACTTAGCCACTCAGCCACTCAAGAACCAGGATTCTGCTGAAGCATaGCAACATCTCAGCAATTATGAACCAACAAATGCCAGGCAGAGA | + |
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Preference number: 5 (lower is better) Translates to: HLATQPLKNQDSAEA*QHLSNYEPTNARQR Trigger: TCTCTGCCTGGCATTTGTTGGTTCATAATTGCTGAGATGTTGGCATGCTTCAGCAGAATCCTGGTTCTTGAGTGGCTGAGTGGCTAAGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650209.1 |
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| CDS TCA 90 bp | TTGAGGTTCTCTTCCCCATGCCCGGGAAAGTTGGAGCCATTTCAGTaGGAACTTGATGTTTACCTTATCCATGGTTCTTCGCACCTAATG | + |
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Preference number: 5 (lower is better) Translates to: LRFSSPCPGKLEPFQ*ELDVYLIHGSSHLM Trigger: CATTAGGTGCGAAGAACCATGGATAAGGTAAACATCAAGTTCTCACTGAAATGGCTCCAACTTTCCCGGGCATGGGGAAGAGAACCTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649189.1 |
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| CDS TCA 90 bp | CTCTTCCCCATGCCCGGGAAAGTTGGAGCCATTTCAGTGAGAACTTaGTGTTTACCTTATCCATGGTTCTTCGCACCTAATGGAATTTCA | + |
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Preference number: 5 (lower is better) Translates to: LFPMPGKVGAISVRT*CLPYPWFFAPNGIS Trigger: TGAAATTCCATTAGGTGCGAAGAACCATGGATAAGGTAAACATCAAGTTCTCACTGAAATGGCTCCAACTTTCCCGGGCATGGGGAAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649189.1 |
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| CDS TCA 90 bp | CCAAACCTAATGTTGCATGCCCCTACAGCCAAGCTCATGGGTCTTTaGAGATGCAAACAGTCTGAGTACAAATTCACTTTTCATGCAAAA | + |
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Preference number: 5 (lower is better) Translates to: PNLMLHAPTAKLMGL*RCKQSEYKFTFHAK Trigger: TTTTGCATGAAAAGTGAATTTGTACTCAGACTGTTTGCATCTTCAAAGACCCATGAGCTTGGCTGTAGGGGCATGCAACATTAGGTTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000647940.1 ENST00000648624.1 ENST00000649254.1 ENST00000649507.2 |
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| CDS TCA 90 bp | AGTTGTAATTGGCTGTGTACCTTTTTGTTCAAAGAACTCATGCTCTaGCGATCGACAAATCACAGCTCTGATAAGGTTGGAACTGGAGTC | + |
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Preference number: 5 (lower is better) Translates to: SCNWLCTFLFKELML*RSTNHSSDKVGTGV Trigger: GACTCCAGTTCCAACCTTATCAGAGCTGTGATTTGTCGATCGTCAGAGCATGAGTTCTTTGAACAAAAAGGTACACAGCCAATTACAACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000649189.1 |
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| CDS GCA 90 bp | TGTCAAATTAACTTCCCAAGTCACTATAGGTCATCAGCCAGGAAATaGAGAAGGGATGAAACAAATCTTCCATCTGCAGGGCAGAAAAGA | + |
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Preference number: 5 (lower is better) Translates to: CQINFPSHYRSSARK*RRDETNLPSAGQKR Trigger: TCTTTTCTGCCCTGCAGATGGAAGATTTGTTTCATCCCTTCTGCATTTCCTGGCTGATGACCTATAGTGACTTGGGAAGTTAATTTGACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000648903.1 ENST00000650209.1 |
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| CDS GCA 90 bp | GAATTGTTAAAGACTTTCCTTGAACGCAGTTCTCAAGTTGTCAAGTaGTCCTTGTATGTCTTCAACTTCAATGGCAGACACAGTAGACCA | + |
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Preference number: 5 (lower is better) Translates to: ELLKTFLERSSQVVK*SLYVFNFNGRHSRP Trigger: TGGTCTACTGTGTCTGCCATTGAAGTTGAAGACATACAAGGAGCACTTGACAACTTGAGAACTGCGTTCAAGGAAAGTCTTTAACAATTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443621.1 |
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| CDS TCA 90 bp | CGCAATGTCTTCTGCTTTTGTGGCAGCTTCAAAGAAGGATTCTTCTaGGACATTTGCTTACAGGAACCAAACTTCTTCTATTCATTTCTC | + |
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Preference number: 5 (lower is better) Translates to: RNVFCFCGSFKEGFF*DICLQEPNFFYSFL Trigger: GAGAAATGAATAGAAGAAGTTTGGTTCCTGTAAGCAAATGTCTCAGAAGAATCCTTCTTTGAAGCTGCCACAAAAGCAGAAGACATTGCG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000648903.1 ENST00000649860.1 |
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| CDS GCA 90 bp | TGTTTAGTTGTAATTGGCTGTGTACCTTTTTGTTCAAAGAACTCATaGTCTGACGATCGACAAATCACAGCTCTGATAAGGTTGGAACTG | + |
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Preference number: 5 (lower is better) Translates to: CLVVIGCVPFCSKNS*SDDRQITALIRLEL Trigger: CAGTTCCAACCTTATCAGAGCTGTGATTTGTCGATCGTCAGAGCATGAGTTCTTTGAACAAAAAGGTACACAGCCAATTACAACTAAACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000649189.1 |
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| CDS CCA 90 bp | ATCTTTGTGTCCTTAGTACCTACCATGGTTCTTCGCACCATTCATTaGTGTATATCACATCTTAAGCAAATATTACACCTAAAGGAGTCA | + |
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Preference number: 5 (lower is better) Translates to: IFVSLVPTMVLRTIH*CISHLKQILHLKES Trigger: TGACTCCTTTAGGTGTAATATTTGCTTAAGATGTGATATACACCAATGAATGGTGCGAAGAACCATGGTAGGTACTAAGGACACAAAGAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649254.1 |
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| CDS TCA 90 bp | GATCGACAAATCACAGCTCTGATAAGGTTGGAACTGGAGTCTACATaGATGGGTGTCCAGAAAAGACCTTATTTAAAAACTTATTATCAT | + |
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Preference number: 5 (lower is better) Translates to: DRQITALIRLELEST*MGVQKRPYLKTYYH Trigger: ATGATAATAAGTTTTTAAATAAGGTCTTTTCTGGACACCCATTCATGTAGACTCCAGTTCCAACCTTATCAGAGCTGTGATTTGTCGATC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000649189.1 |
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| CDS CCA 90 bp | CTTACAAACCATTCTGAGAGTGCTCTTCAAGTTATAAATATGTATTaGCAAAACCCTTTGATCGAATCTCAACATGTGCCTTTCCTCATA | + |
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Preference number: 5 (lower is better) Translates to: LTNHSESALQVINMY*QNPLIESQHVPFLI Trigger: TATGAGGAAAGGCACATGTTGAGATTCGATCAAAGGGTTTTGCCAATACATATTTATAACTTGAAGAGCACTCTCAGAATGGTTTGTAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650209.1 |
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| CDS TCA 72 bp | CCCTCTCTCCGAGGCCACACCATGTTTGCTCCTTCGTaGCCACGTCCCCTCCTGCCCCACAACGCCTCTCCT | + |
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Preference number: 6 (lower is better) Translates to: PSLRGHTMFAPS*PRPLLPHNASP Trigger: AGGAGAGGCGTTGTGGGGCAGGAGGGGACGTGGTCACGAAGGAGCAAACATGGTGTGGCCTCGGAGAGAGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649860.1 |
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| CDS TCA 72 bp | AGTGGCTTGCTTCTGATCTTCACAGTGGCAGGCCAATaGGCCAAAGCTCTTAAGATGGCCCCTGCTTTCCCC | + |
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Preference number: 6 (lower is better) Translates to: SGLLLIFTVAGQ*AKALKMAPAFP Trigger: GGGGAAAGCAGGGGCCATCTTAAGAGCTTTGGCTCATTGGCCTGCCACTGTGAAGATCAGAAGCAAGCCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648903.1 |
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| CDS TCA 72 bp | CCCAGCTCAGAGACACAATCCCTTAAAGAAGATCTGTaGCAGCCCCTGCCATCGCAGGAAGGGATGATGTCC | + |
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Preference number: 6 (lower is better) Translates to: PSSETQSLKEDL*QPLPSQEGMMS Trigger: GGACATCATCCCTTCCTGCGATGGCAGGGGCTGTCACAGATCTTCTTTAAGGGATTGTGTCTCTGAGCTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649189.1 |
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| CDS TCA 72 bp | AGTGGCTTGCTTCTGATCTTCACAGTGGCAGGCCAATaGGCCAAAGCTCTTAAGATGGCCCCTGCTTTCCCA | + |
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Preference number: 6 (lower is better) Translates to: SGLLLIFTVAGQ*AKALKMAPAFP Trigger: TGGGAAAGCAGGGGCCATCTTAAGAGCTTTGGCTCATTGGCCTGCCACTGTGAAGATCAGAAGCAAGCCACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650209.1 |
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| CDS CCA 72 bp | TCACAGTGGCAGGCCAATGAGCCAAAGCTCTTAAGATaGCCCCTGCTTTCCCAAGTGTATTGGACAGAGAGA | + |
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Preference number: 6 (lower is better) Translates to: SQWQANEPKLLR*PLLSQVYWTER Trigger: TCTCTCTGTCCAATACACTTGGGAAAGCAGGGGCCATCTTAAGAGCTTTGGCTCATTGGCCTGCCACTGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650209.1 |
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| CDS TCA 72 bp | AATATGCCAATCCACGCTGCCTGGTTTAGCAACAGGTaGGGAGGAAACTCCACCTCCGTGAAGACTTGTTTG | + |
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Preference number: 6 (lower is better) Translates to: NMPIHAAWFSNR*GGNSTSVKTCL Trigger: CAAACAAGTCTTCACGGAGGTGGAGTTTCCTCCTCACCTGTTGCTAAACCAGGCAGCGTGGATTGGCATATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000452852.2 ENST00000647940.1 ENST00000648624.1 ENST00000648903.1 ENST00000649254.1 ENST00000649507.2 ENST00000650209.1 |
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| CDS TCA 72 bp | GGAGGAAACTCCACCTCCGTGAAGACTTGTTTGTATTaGGCTGATGAATGGCCATGTGAGACGCCAACAACT | + |
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Preference number: 6 (lower is better) Translates to: GGNSTSVKTCLY*ADEWPCETPTT Trigger: AGTTGTTGGCGTCTCACATGGCCATTCATCAGCTCAATACAAACAAGTCTTCACGGAGGTGGAGTTTCCTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000452852.2 ENST00000647940.1 ENST00000650209.1 |
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| CDS TCA 72 bp | GGAGGAAACTCCACCTCCGTGAAGACTTGTTTGTATTaGGCTGATGAATGGCCATGTGAGACGCCAACAACA | + |
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Preference number: 6 (lower is better) Translates to: GGNSTSVKTCLY*ADEWPCETPTT Trigger: TGTTGTTGGCGTCTCACATGGCCATTCATCAGCTCAATACAAACAAGTCTTCACGGAGGTGGAGTTTCCTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000648624.1 ENST00000648903.1 ENST00000649254.1 ENST00000649507.2 |
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| CDS TCA 72 bp | GGTTTAGCAACAGGTGAGGAGGAAACTCCACCTCCGTaGAGACTTGTTTGTATTGAGCTGATGAATGGCCAT | + |
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Preference number: 6 (lower is better) Translates to: GLATGEEETPPP*RLVCIELMNGH Trigger: ATGGCCATTCATCAGCTCAATACAAACAAGTCTTCACGGAGGTGGAGTTTCCTCCTCACCTGTTGCTAAACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000452852.2 ENST00000647940.1 ENST00000648624.1 ENST00000648903.1 ENST00000649254.1 ENST00000649507.2 ENST00000650209.1 |
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| CDS CAA 90 bp | CTCTTCTGGCATGTTTATTATTCAGCGGCCTTGAAGAGTGATTTTTaGTTTGAGGTTCTCTTCCCCATGCCCGGGAAAGTTGGAGCCATT | + |
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Preference number: 6 (lower is better) Translates to: LFWHVYYSAALKSDF*FEVLFPMPGKVGAI Trigger: AATGGCTCCAACTTTCCCGGGCATGGGGAAGAGAACCTCAAACAAAAAATCACTCTTCAAGGCCGCTGAATAATAAACATGCCAGAAGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000649189.1 |
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| CDS TCA 72 bp | CTTTGTAAAGCTAACCCACCAATGTGGGTGACACAATaGCTCCCCAGCTCAGAGACACAATCCCTTAAAGAA | + |
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Preference number: 6 (lower is better) Translates to: LCKANPPMWVTQ*LPSSETQSLKE Trigger: TTCTTTAAGGGATTGTGTCTCTGAGCTGGGGAGTCATTGTGTCACCCACATTGGTGGGTTAGCTTTACAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649189.1 |
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| CDS GCA 72 bp | CAGATGAAGGCACACTTAGAGCCATCTGGAAGAAGATaGTGGTTGATTAGGGTTCAATCTCTCTCCTTAGAG | + |
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Preference number: 6 (lower is better) Translates to: QMKAHLEPSGRR*WLIRVQSLSLE Trigger: CTCTAAGGAGAGAGATTGAACCCTAATCAACCAGCATCTTCTTCCAGATGGCTCTAAGTGTGCCTTCATCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650209.1 |
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| CDS GCA 72 bp | ACTCAGCCACTCAAGAACCAGGATTCTGCTGAAGCATaGCAACATCTCAGCAATTATGAACCAACAAATGCC | + |
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Preference number: 6 (lower is better) Translates to: TQPLKNQDSAEA*QHLSNYEPTNA Trigger: GGCATTTGTTGGTTCATAATTGCTGAGATGTTGGCATGCTTCAGCAGAATCCTGGTTCTTGAGTGGCTGAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650209.1 |
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| CDS TCA 72 bp | ATGCCCGGGAAAGTTGGAGCCATTTCAGTGAGAACTTaGTGTTTACCTTATCCATGGTTCTTCGCACCTAAT | + |
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Preference number: 6 (lower is better) Translates to: MPGKVGAISVRT*CLPYPWFFAPN Trigger: ATTAGGTGCGAAGAACCATGGATAAGGTAAACATCAAGTTCTCACTGAAATGGCTCCAACTTTCCCGGGCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649189.1 |
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| CDS CAA 72 bp | AAGGCACACTTAGAGCCATCTGGAAGAAGATGCTGGTaGATTAGGGTTCAATCTCTCTCCTTAGAGAATAGC | + |
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Preference number: 6 (lower is better) Translates to: KAHLEPSGRRCW*IRVQSLSLENS Trigger: GCTATTCTCTAAGGAGAGAGATTGAACCCTAATCAACCAGCATCTTCTTCCAGATGGCTCTAAGTGTGCCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650209.1 |
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| CDS CAA 90 bp | AGCACAGAGACATTGCTTGGTAAGCGCATGGATTTGAAATGTTTTTaGTATTGGCTCCAAGAATCTTCTGACCAGAGAATGAGAGCACCC | + |
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Preference number: 6 (lower is better) Translates to: STETLLGKRMDLKCF*YWLQESSDQRMRAP Trigger: GGGTGCTCTCATTCTCTGGTCAGAAGATTCTTGGAGCCAATACAAAAAACATTTCAAATCCATGCGCTTACCAAGCAATGTCTCTGTGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000649189.1 |
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| CDS TCA 72 bp | ATGTTGCATGCCCCTACAGCCAAGCTCATGGGTCTTTaGAGATGCAAACAGTCTGAGTACAAATTCACTTTT | + |
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Preference number: 6 (lower is better) Translates to: MLHAPTAKLMGL*RCKQSEYKFTF Trigger: AAAAGTGAATTTGTACTCAGACTGTTTGCATCTTCAAAGACCCATGAGCTTGGCTGTAGGGGCATGCAACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000647940.1 ENST00000648624.1 ENST00000649254.1 ENST00000649507.2 |
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| CDS TCA 72 bp | TGGCTGTGTACCTTTTTGTTCAAAGAACTCATGCTCTaGCGATCGACAAATCACAGCTCTGATAAGGTTGGA | + |
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Preference number: 6 (lower is better) Translates to: WLCTFLFKELML*RSTNHSSDKVG Trigger: TCCAACCTTATCAGAGCTGTGATTTGTCGATCGTCAGAGCATGAGTTCTTTGAACAAAAAGGTACACAGCCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000649189.1 |
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| CDS GCA 72 bp | AAGACTTTCCTTGAACGCAGTTCTCAAGTTGTCAAGTaGTCCTTGTATGTCTTCAACTTCAATGGCAGACAC | + |
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Preference number: 6 (lower is better) Translates to: KTFLERSSQVVK*SLYVFNFNGRH Trigger: GTGTCTGCCATTGAAGTTGAAGACATACAAGGAGCACTTGACAACTTGAGAACTGCGTTCAAGGAAAGTCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443621.1 |
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| CDS CAA 72 bp | TTCCTTGAACGCAGTTCTCAAGTTGTCAAGTGCTCCTaGTATGTCTTCAACTTCAATGGCAGACACAGTAGA | + |
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Preference number: 6 (lower is better) Translates to: FLERSSQVVKCS*YVFNFNGRHSR Trigger: TCTACTGTGTCTGCCATTGAAGTTGAAGACATACAAGGAGCACTTGACAACTTGAGAACTGCGTTCAAGGAA 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443621.1 |
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| CDS CAA 90 bp | AAACAGATGAAGGCACACTTAGAGCCATCTGGAAGAAGATGCTGGTaGATTAGGGTTCAATCTCTCTCCTTAGAGAATAGCTTACACAAA | + |
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Preference number: 6 (lower is better) Translates to: KQMKAHLEPSGRRCW*IRVQSLSLENSLHK Trigger: TTTGTGTAAGCTATTCTCTAAGGAGAGAGATTGAACCCTAATCAACCAGCATCTTCTTCCAGATGGCTCTAAGTGTGCCTTCATCTGTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650209.1 |
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| CDS CAA 90 bp | AATCACAACCAATTTACAGATAATGTGCTAGTTTCTTGTGTGTGTTaGTCAGTTTCATCACCTGTGCCAGATTGTCAAATGCATGCCCTA | + |
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Preference number: 6 (lower is better) Translates to: NHNQFTDNVLVSCVC*SVSSPVPDCQMHAL Trigger: TAGGGCATGCATTTGACAATCTGGCACAGGTGATGAAACTGACAAACACACACAAGAAACTAGCACATTATCTGTAAATTGGTTGTGATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000648903.1 ENST00000650209.1 |
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| CDS TCA 72 bp | TTCTGCTTTTGTGGCAGCTTCAAAGAAGGATTCTTCTaGGACATTTGCTTACAGGAACCAAACTTCTTCTAT | + |
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Preference number: 6 (lower is better) Translates to: FCFCGSFKEGFF*DICLQEPNFFY Trigger: ATAGAAGAAGTTTGGTTCCTGTAAGCAAATGTCTCAGAAGAATCCTTCTTTGAAGCTGCCACAAAAGCAGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000648903.1 ENST00000649860.1 |
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| CDS CCA 72 bp | TCCTTAGTACCTACCATGGTTCTTCGCACCATTCATTaGTGTATATCACATCTTAAGCAAATATTACACCTA | + |
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Preference number: 6 (lower is better) Translates to: SLVPTMVLRTIH*CISHLKQILHL Trigger: TAGGTGTAATATTTGCTTAAGATGTGATATACACCAATGAATGGTGCGAAGAACCATGGTAGGTACTAAGGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649254.1 |
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| CDS CAA 72 bp | CAATTTACAGATAATGTGCTAGTTTCTTGTGTGTGTTaGTCAGTTTCATCACCTGTGCCAGATTGTCAAATG | + |
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Preference number: 6 (lower is better) Translates to: QFTDNVLVSCVC*SVSSPVPDCQM Trigger: CATTTGACAATCTGGCACAGGTGATGAAACTGACAAACACACACAAGAAACTAGCACATTATCTGTAAATTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000648903.1 ENST00000650209.1 |
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| CDS CAA 90 bp | TCTGAGAGTGCTCTTCAAGTTATAAATATGTATTGGCAAAACCCTTaGATCGAATCTCAACATGTGCCTTTCCTCATAGTAAGAAATCAT | + |
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Preference number: 6 (lower is better) Translates to: SESALQVINMYWQNP*IESQHVPFLIVRNH Trigger: ATGATTTCTTACTATGAGGAAAGGCACATGTTGAGATTCGATCAAAGGGTTTTGCCAATACATATTTATAACTTGAAGAGCACTCTCAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650209.1 |
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| CDS CAA 72 bp | CTAACTGAATATGTTTTTAGGAGATGGCACAGGTATTaGCATAAGATTACTTGTTTAGCACAGAGACATTGC | + |
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Preference number: 6 (lower is better) Translates to: LTEYVFRRWHRY*HKITCLAQRHC Trigger: GCAATGTCTCTGTGCTAAACAAGTAATCTTATGCAAATACCTGTGCCATCTCCTAAAAACATATTCAGTTAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000649189.1 |
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