Pregenerated sensors for LINC00387 (Homo sapiens)

Ensembl gene IDs: ENSG00000231914

Ensembl transcript IDs: ENST00000422609.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CAA 90 bp	AGCATGCTTCAGAGTCATCTGGAAGGCTTGTTAAAATGCAGGTTGTaGGGTTCCACCCCAGAGCTTCTGATTCAGCAGATCTTGGGTGAG	+
Preference number: 6 (lower is better) Translates to: SMLQSHLEGLLKCRL*GSTPELLIQQILGE Trigger: CTCACCCAAGATCTGCTGAATCAGAAGCTCTGGGGTGGAACCCAACAACCTGCATTTTAACAAGCCTTCCAGATGACTCTGAAGCATGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000422609.1
CDS TCA 72 bp	GCATTTCTAGCAGTTTTCCAGTGGATGCTGCCCATCTaGGGACTACACATTGAGAGCTACTTGCTGCAGAGA	+
Preference number: 6 (lower is better) Translates to: AFLAVFQWMLPI*GLHIESYLLQR Trigger: TCTCTGCAGCAAGTAGCTCTCAATGTGTAGTCCTCAGATGGGCAGCATCCACTGGAAAACTGCTAGAAATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422609.1
CDS CAA 72 bp	TTTTCCAGTGGATGCTGCCCATCTGAGGACTACACATaGAGAGCTACTTGCTGCAGAGAAAAGTGGAATGGG	+
Preference number: 6 (lower is better) Translates to: FSSGCCPSEDYT*RATCCREKWNG Trigger: CCCATTCCACTTTTCTCTGCAGCAAGTAGCTCTCAATGTGTAGTCCTCAGATGGGCAGCATCCACTGGAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000422609.1
CDS CAA 72 bp	CAGAGTCATCTGGAAGGCTTGTTAAAATGCAGGTTGTaGGGTTCCACCCCAGAGCTTCTGATTCAGCAGATC	+
Preference number: 6 (lower is better) Translates to: QSHLEGLLKCRL*GSTPELLIQQI Trigger: GATCTGCTGAATCAGAAGCTCTGGGGTGGAACCCAACAACCTGCATTTTAACAAGCCTTCCAGATGACTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000422609.1
CDS GCA 72 bp	CCACACTCAGGTGACAGACAGTCTTGCAGTTGGTGCTaGTGGTCACATGAAGACATAATGCATTGCATTAGT	+
Preference number: 6 (lower is better) Translates to: PHSGDRQSCSWC*WSHEDIMHCIS Trigger: ACTAATGCAATGCATTATGTCTTCATGTGACCAGCAGCACCAACTGCAAGACTGTCTGTCACCTGAGTGTGG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422609.1
CDS GCA 72 bp	AAGCCACACTCAGGTGACAGACAGTCTTGCAGTTGGTaGTGCTGGTCACATGAAGACATAATGCATTGCATT	+
Preference number: 6 (lower is better) Translates to: KPHSGDRQSCSW*CWSHEDIMHCI Trigger: AATGCAATGCATTATGTCTTCATGTGACCAGCAGCACCAACTGCAAGACTGTCTGTCACCTGAGTGTGGCTT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422609.1
CDS CCA 72 bp	CACTCAGGTGACAGACAGTCTTGCAGTTGGTGCTGCTaGTCACATGAAGACATAATGCATTGCATTAGTTAT	+
Preference number: 6 (lower is better) Translates to: HSGDRQSCSWCC*SHEDIMHCISY Trigger: ATAACTAATGCAATGCATTATGTCTTCATGTGACCAGCAGCACCAACTGCAAGACTGTCTGTCACCTGAGTG 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422609.1
CDS GCA 72 bp	AGTTGGTGCTGCTGGTCACATGAAGACATAATGCATTaGATTAGTTATCAGTATGGAGCATGCTTCAGAGTC	+
Preference number: 6 (lower is better) Translates to: SWCCWSHEDIMH*ISYQYGACFRV Trigger: GACTCTGAAGCATGCTCCATACTGATAACTAATGCAATGCATTATGTCTTCATGTGACCAGCAGCACCAACT 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422609.1

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