RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC00385 (Homo sapiens)

Ensembl gene IDs: ENSG00000232643

Ensembl transcript IDs: ENST00000435044.2

Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GGGCGGGAGCTGGCGTTTCAAGCACCGCTGCCCACCCGAGGGATGTaGAGGGTAGCAACAGCCCACGCCGGCGGTGGGGAGCAGCCTGGT +
Preference number: 5 (lower is better)
Translates to: GRELAFQAPLPTRGM*RVATAHAGGGEQPG
Trigger: ACCAGGCTGCTCCCCACCGCCGGCGTGGGCTGTTGCTACCCTGCACATCCCTCGGGTGGGCAGCGGTGCTTGAAACGCCAGCTCCCGCCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CCA 90 bp GCCCACCCGAGGGATGTGCAGGGTAGCAACAGCCCACGCCGGCGGTaGGGAGCAGCCTGGTCACCCACAGGAGCTTGTGAGGCCCGAGGA +
Preference number: 5 (lower is better)
Translates to: AHPRDVQGSNSPRRR*GAAWSPTGACEARG
Trigger: TCCTCGGGCCTCACAAGCTCCTGTGGGTGACCAGGCTGCTCCCCACCGCCGGCGTGGGCTGTTGCTACCCTGCACATCCCTCGGGTGGGC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS TCA 90 bp CCTCTAGCAGACGGCCCACTGAACCGTGAGCGCGGTCCTGCTGACTaGGGGGCTCTGCGCAGCCTCACGGCCTCGCTGCGCTCTCAAGGC +
Preference number: 5 (lower is better)
Translates to: PLADGPLNRERGPAD*GALRSLTASLRSQG
Trigger: GCCTTGAGAGCGCAGCGAGGCCGTGAGGCTGCGCAGAGCCCCTCAGTCAGCAGGACCGCGCTCACGGTTCAGTGGGCCGTCTGCTAGAGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CCA 90 bp GATGTGCAGGGTAGCAACAGCCCACGCCGGCGGTGGGGAGCAGCCTaGTCACCCACAGGAGCTTGTGAGGCCCGAGGAGTGTCCGTGTGG +
Preference number: 5 (lower is better)
Translates to: DVQGSNSPRRRWGAA*SPTGACEARGVSVW
Trigger: CCACACGGACACTCCTCGGGCCTCACAAGCTCCTGTGGGTGACCAGGCTGCTCCCCACCGCCGGCGTGGGCTGTTGCTACCCTGCACATC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CCA 90 bp GCTCTGCGCAGCCTCACGGCCTCGCTGCGCTCTCAAGGCCGCTCGTaGTTGTGTGGAGATCACAGCAATGGGGGCGAGAGTGGACGCCGG +
Preference number: 5 (lower is better)
Translates to: ALRSLTASLRSQGRS*LCGDHSNGGESGRR
Trigger: CCGGCGTCCACTCTCGCCCCCATTGCTGTGATCTCCACACAACCACGAGCGGCCTTGAGAGCGCAGCGAGGCCGTGAGGCTGCGCAGAGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CCA 90 bp AGGCCGCTCGTGGTTGTGTGGAGATCACAGCAATGGGGGCGAGAGTaGACGCCGGAGTGCAGGTGGGGCTGGTGCAGACCTCCAGGTGCG +
Preference number: 5 (lower is better)
Translates to: RPLVVVWRSQQWGRE*TPECRWGWCRPPGA
Trigger: CGCACCTGGAGGTCTGCACCAGCCCCACCTGCACTCCGGCGTCCACTCTCGCCCCCATTGCTGTGATCTCCACACAACCACGAGCGGCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CCA 90 bp CAGCCTCACGGCCTCGCTGCGCTCTCAAGGCCGCTCGTGGTTGTGTaGAGATCACAGCAATGGGGGCGAGAGTGGACGCCGGAGTGCAGG +
Preference number: 5 (lower is better)
Translates to: QPHGLAALSRPLVVV*RSQQWGREWTPECR
Trigger: CCTGCACTCCGGCGTCCACTCTCGCCCCCATTGCTGTGATCTCCACACAACCACGAGCGGCCTTGAGAGCGCAGCGAGGCCGTGAGGCTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS GCA 90 bp GCGGTCCTGCTGACTGAGGGGCTCTGCGCAGCCTCACGGCCTCGCTaGGCTCTCAAGGCCGCTCGTGGTTGTGTGGAGATCACAGCAATG +
Preference number: 5 (lower is better)
Translates to: AVLLTEGLCAASRPR*ALKAARGCVEITAM
Trigger: CATTGCTGTGATCTCCACACAACCACGAGCGGCCTTGAGAGCGCAGCGAGGCCGTGAGGCTGCGCAGAGCCCCTCAGTCAGCAGGACCGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CCA 90 bp GCTGCGCTCTCAAGGCCGCTCGTGGTTGTGTGGAGATCACAGCAATaGGGGCGAGAGTGGACGCCGGAGTGCAGGTGGGGCTGGTGCAGA +
Preference number: 5 (lower is better)
Translates to: AALSRPLVVVWRSQQ*GREWTPECRWGWCR
Trigger: TCTGCACCAGCCCCACCTGCACTCCGGCGTCCACTCTCGCCCCCATTGCTGTGATCTCCACACAACCACGAGCGGCCTTGAGAGCGCAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CCA 90 bp CGAGGTGCGGTTCTTTCCTCTGCACAAGCCGGCTTCCTGGGATCGTaGCTCTTCTGGGGAGAGGGACCTTGGAGAGCGCCTGCCTTCGGG +
Preference number: 5 (lower is better)
Translates to: RGAVLSSAQAGFLGS*LFWGEGPWRAPAFG
Trigger: CCCGAAGGCAGGCGCTCTCCAAGGTCCCTCTCCCCAGAAGAGCCACGATCCCAGGAAGCCGGCTTGTGCAGAGGAAAGAACCGCACCTCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CCA 90 bp CAAGCCGGCTTCCTGGGATCGTGGCTCTTCTGGGGAGAGGGACCTTaGAGAGCGCCTGCCTTCGGGCAGGAGAATCTCCACTGGACGAGA +
Preference number: 5 (lower is better)
Translates to: QAGFLGSWLFWGEGP*RAPAFGQENLHWTR
Trigger: TCTCGTCCAGTGGAGATTCTCCTGCCCGAAGGCAGGCGCTCTCCAAGGTCCCTCTCCCCAGAAGAGCCACGATCCCAGGAAGCCGGCTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS GCA 90 bp CCTGGGATCGTGGCTCTTCTGGGGAGAGGGACCTTGGAGAGCGCCTaGCTTCGGGCAGGAGAATCTCCACTGGACGAGAGAGAATCTGGA +
Preference number: 5 (lower is better)
Translates to: PGIVALLGRGTLESA*LRAGESPLDERESG
Trigger: TCCAGATTCTCTCTCGTCCAGTGGAGATTCTCCTGCCCGAAGGCAGGCGCTCTCCAAGGTCCCTCTCCCCAGAAGAGCCACGATCCCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS GCA 90 bp GGCAGAGCTGGGGTTGTTCTGACAACGAGGTGCGGTTCTTTCCTCTaGACAAGCCGGCTTCCTGGGATCGTGGCTCTTCTGGGGAGAGGG +
Preference number: 5 (lower is better)
Translates to: GRAGVVLTTRCGSFL*TSRLPGIVALLGRG
Trigger: CCCTCTCCCCAGAAGAGCCACGATCCCAGGAAGCCGGCTTGTGCAGAGGAAAGAACCGCACCTCGTTGTCAGAACAACCCCAGCTCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CCA 90 bp GTTCTTTCCTCTGCACAAGCCGGCTTCCTGGGATCGTGGCTCTTCTaGGGAGAGGGACCTTGGAGAGCGCCTGCCTTCGGGCAGGAGAAT +
Preference number: 5 (lower is better)
Translates to: VLSSAQAGFLGSWLF*GEGPWRAPAFGQEN
Trigger: ATTCTCCTGCCCGAAGGCAGGCGCTCTCCAAGGTCCCTCTCCCCAGAAGAGCCACGATCCCAGGAAGCCGGCTTGTGCAGAGGAAAGAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CCA 90 bp TCTGACAACGAGGTGCGGTTCTTTCCTCTGCACAAGCCGGCTTCCTaGGATCGTGGCTCTTCTGGGGAGAGGGACCTTGGAGAGCGCCTG +
Preference number: 5 (lower is better)
Translates to: SDNEVRFFPLHKPAS*DRGSSGERDLGERL
Trigger: CAGGCGCTCTCCAAGGTCCCTCTCCCCAGAAGAGCCACGATCCCAGGAAGCCGGCTTGTGCAGAGGAAAGAACCGCACCTCGTTGTCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS TCA 90 bp CGCTCCTCCGTTAGTCACGCAAGCTTGCCTGGGTGGTTAGCACAATaGAGCCGTCAAGCCACTAGGCAGGAAGGGCGGGAGCTGGCGTTT +
Preference number: 5 (lower is better)
Translates to: RSSVSHASLPGWLAQ*SRQATRQEGRELAF
Trigger: AAACGCCAGCTCCCGCCCTTCCTGCCTAGTGGCTTGACGGCTTCATTGTGCTAACCACCCAGGCAAGCTTGCGTGACTAACGGAGGAGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS GCA 90 bp ACAGGAGCTTGTGAGGCCCGAGGAGTGTCCGTGTGGCAAGGCCCCTaGCCCAGCTTTTCATTTATGAAACAGAGCGTGACCTCCAGAACT +
Preference number: 5 (lower is better)
Translates to: TGACEARGVSVWQGP*PSFSFMKQSVTSRT
Trigger: AGTTCTGGAGGTCACGCTCTGTTTCATAAATGAAAAGCTGGGGCAGGGGCCTTGCCACACGGACACTCCTCGGGCCTCACAAGCTCCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS TCA 72 bp GACGGCCCACTGAACCGTGAGCGCGGTCCTGCTGACTaGGGGGCTCTGCGCAGCCTCACGGCCTCGCTGCGC +
Preference number: 6 (lower is better)
Translates to: DGPLNRERGPAD*GALRSLTASLR
Trigger: GCGCAGCGAGGCCGTGAGGCTGCGCAGAGCCCCTCAGTCAGCAGGACCGCGCTCACGGTTCAGTGGGCCGTC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS GCA 72 bp GGGCGAGAGTGGACGCCGGAGTGCAGGTGGGGCTGGTaGAGACCTCCAGGTGCGGGTAACGGGGACTGGCCC +
Preference number: 6 (lower is better)
Translates to: GREWTPECRWGW*RPPGAGNGDWP
Trigger: GGGCCAGTCCCCGTTACCCGCACCTGGAGGTCTGCACCAGCCCCACCTGCACTCCGGCGTCCACTCTCGCCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CCA 72 bp CAGCAATGGGGGCGAGAGTGGACGCCGGAGTGCAGGTaGGGCTGGTGCAGACCTCCAGGTGCGGGTAACGGG +
Preference number: 6 (lower is better)
Translates to: QQWGREWTPECR*GWCRPPGAGNG
Trigger: CCCGTTACCCGCACCTGGAGGTCTGCACCAGCCCCACCTGCACTCCGGCGTCCACTCTCGCCCCCATTGCTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CAA 90 bp CTGCGCAGCCTCACGGCCTCGCTGCGCTCTCAAGGCCGCTCGTGGTaGTGTGGAGATCACAGCAATGGGGGCGAGAGTGGACGCCGGAGT +
Preference number: 6 (lower is better)
Translates to: LRSLTASLRSQGRSW*CGDHSNGGESGRRS
Trigger: ACTCCGGCGTCCACTCTCGCCCCCATTGCTGTGATCTCCACACAACCACGAGCGGCCTTGAGAGCGCAGCGAGGCCGTGAGGCTGCGCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CCA 72 bp GGCCTCGCTGCGCTCTCAAGGCCGCTCGTGGTTGTGTaGAGATCACAGCAATGGGGGCGAGAGTGGACGCCG +
Preference number: 6 (lower is better)
Translates to: GLAALSRPLVVV*RSQQWGREWTP
Trigger: CGGCGTCCACTCTCGCCCCCATTGCTGTGATCTCCACACAACCACGAGCGGCCTTGAGAGCGCAGCGAGGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CCA 72 bp TCTGCACAAGCCGGCTTCCTGGGATCGTGGCTCTTCTaGGGAGAGGGACCTTGGAGAGCGCCTGCCTTCGGG +
Preference number: 6 (lower is better)
Translates to: SAQAGFLGSWLF*GEGPWRAPAFG
Trigger: CCCGAAGGCAGGCGCTCTCCAAGGTCCCTCTCCCCAGAAGAGCCACGATCCCAGGAAGCCGGCTTGTGCAGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CCA 72 bp GTGGTTGTGTGGAGATCACAGCAATGGGGGCGAGAGTaGACGCCGGAGTGCAGGTGGGGCTGGTGCAGACCT +
Preference number: 6 (lower is better)
Translates to: VVVWRSQQWGRE*TPECRWGWCRP
Trigger: AGGTCTGCACCAGCCCCACCTGCACTCCGGCGTCCACTCTCGCCCCCATTGCTGTGATCTCCACACAACCAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CCA 72 bp AGCCTCACGGCCTCGCTGCGCTCTCAAGGCCGCTCGTaGTTGTGTGGAGATCACAGCAATGGGGGCGAGAGT +
Preference number: 6 (lower is better)
Translates to: SLTASLRSQGRS*LCGDHSNGGES
Trigger: ACTCTCGCCCCCATTGCTGTGATCTCCACACAACCACGAGCGGCCTTGAGAGCGCAGCGAGGCCGTGAGGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CAA 72 bp CTCACGGCCTCGCTGCGCTCTCAAGGCCGCTCGTGGTaGTGTGGAGATCACAGCAATGGGGGCGAGAGTGGA +
Preference number: 6 (lower is better)
Translates to: LTASLRSQGRSW*CGDHSNGGESG
Trigger: TCCACTCTCGCCCCCATTGCTGTGATCTCCACACAACCACGAGCGGCCTTGAGAGCGCAGCGAGGCCGTGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CAA 90 bp ACAAGCCGGCTTCCTGGGATCGTGGCTCTTCTGGGGAGAGGGACCTaGGAGAGCGCCTGCCTTCGGGCAGGAGAATCTCCACTGGACGAG +
Preference number: 6 (lower is better)
Translates to: TSRLPGIVALLGRGT*ESACLRAGESPLDE
Trigger: CTCGTCCAGTGGAGATTCTCCTGCCCGAAGGCAGGCGCTCTCCAAGGTCCCTCTCCCCAGAAGAGCCACGATCCCAGGAAGCCGGCTTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS TCA 72 bp CTGTATGACGGAGCTCCCCGCGTTGGGCAAGCAGGGTaGCCCCGTCCTCCATCATGGCTCTCTCACTGTGAC +
Preference number: 6 (lower is better)
Translates to: LYDGAPRVGQAG*PRPPSWLSHCD
Trigger: GTCACAGTGAGAGAGCCATGATGGAGGACGGGGTCACCCTGCTTGCCCAACGCGGGGAGCTCCGTCATACAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS TCA 72 bp CAGAGCGTGACCTCCAGAACTCACTGGGGTTCTGTATaGCGGAGCTCCCCGCGTTGGGCAAGCAGGGTGACC +
Preference number: 6 (lower is better)
Translates to: QSVTSRTHWGSV*RSSPRWASRVT
Trigger: GGTCACCCTGCTTGCCCAACGCGGGGAGCTCCGTCATACAGAACCCCAGTGAGTTCTGGAGGTCACGCTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS GCA 72 bp GTGGCTCTTCTGGGGAGAGGGACCTTGGAGAGCGCCTaGCTTCGGGCAGGAGAATCTCCACTGGACGAGAGA +
Preference number: 6 (lower is better)
Translates to: VALLGRGTLESA*LRAGESPLDER
Trigger: TCTCTCGTCCAGTGGAGATTCTCCTGCCCGAAGGCAGGCGCTCTCCAAGGTCCCTCTCCCCAGAAGAGCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CCA 72 bp TTCCTGGGATCGTGGCTCTTCTGGGGAGAGGGACCTTaGAGAGCGCCTGCCTTCGGGCAGGAGAATCTCCAC +
Preference number: 6 (lower is better)
Translates to: FLGSWLFWGEGP*RAPAFGQENLH
Trigger: GTGGAGATTCTCCTGCCCGAAGGCAGGCGCTCTCCAAGGTCCCTCTCCCCAGAAGAGCCACGATCCCAGGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS TCA 72 bp CTATCCAGGTCATACCTGCATGGCGGGATTCTTCGATaGGCCAAGCAGTCCTGGGCCCCAGAGCTGGGGCTG +
Preference number: 6 (lower is better)
Translates to: LSRSYLHGGILR*AKQSWAPELGL
Trigger: CAGCCCCAGCTCTGGGGCCCAGGACTGCTTGGCTCATCGAAGAATCCCGCCATGCAGGTATGACCTGGATAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CCA 72 bp GAGGTGCGGTTCTTTCCTCTGCACAAGCCGGCTTCCTaGGATCGTGGCTCTTCTGGGGAGAGGGACCTTGGA +
Preference number: 6 (lower is better)
Translates to: EVRFFPLHKPAS*DRGSSGERDLG
Trigger: TCCAAGGTCCCTCTCCCCAGAAGAGCCACGATCCCAGGAAGCCGGCTTGTGCAGAGGAAAGAACCGCACCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS GCA 72 bp GTAGGTGGCAGAGCTGGGGTTGTTCTGACAACGAGGTaGGGTTCTTTCCTCTGCACAAGCCGGCTTCCTGGG +
Preference number: 6 (lower is better)
Translates to: VGGRAGVVLTTR*GSFLCTSRLPG
Trigger: CCCAGGAAGCCGGCTTGTGCAGAGGAAAGAACCGCACCTCGTTGTCAGAACAACCCCAGCTCTGCCACCTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS TCA 72 bp GTTAGTCACGCAAGCTTGCCTGGGTGGTTAGCACAATaGAGCCGTCAAGCCACTAGGCAGGAAGGGCGGGAG +
Preference number: 6 (lower is better)
Translates to: VSHASLPGWLAQ*SRQATRQEGRE
Trigger: CTCCCGCCCTTCCTGCCTAGTGGCTTGACGGCTTCATTGTGCTAACCACCCAGGCAAGCTTGCGTGACTAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS TCA 72 bp GGAGTCGGTATGGGGTGGGGGTGCAATAAGGGACATTaGCCCTCAGGTGTGTGGGCTTGGAAACTAGGAGCG +
Preference number: 6 (lower is better)
Translates to: GVGMGWGCNKGH*PSGVWAWKLGA
Trigger: CGCTCCTAGTTTCCAAGCCCACACACCTGAGGGTCAATGTCCCTTATTGCACCCCCACCCCATACCGACTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS GCA 72 bp TGTGAGGCCCGAGGAGTGTCCGTGTGGCAAGGCCCCTaGCCCAGCTTTTCATTTATGAAACAGAGCGTGACC +
Preference number: 6 (lower is better)
Translates to: CEARGVSVWQGP*PSFSFMKQSVT
Trigger: GGTCACGCTCTGTTTCATAAATGAAAAGCTGGGGCAGGGGCCTTGCCACACGGACACTCCTCGGGCCTCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CAA 90 bp GTGGTGACGGGGGAGATGCAGGGAATGGGCAGACAGGAGAGATACTaGGGGCAAGAACAAACAGGACTTGCTGATGGAGTCGGTATGGGG +
Preference number: 6 (lower is better)
Translates to: VVTGEMQGMGRQERY*GQEQTGLADGVGMG
Trigger: CCCCATACCGACTCCATCAGCAAGTCCTGTTTGTTCTTGCCCCAAGTATCTCTCCTGTCTGCCCATTCCCTGCATCTCCCCCGTCACCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CCA 72 bp CTTGCCCAAGGTCACACAAGGTGTAGGTGGCAGAGCTaGGGTTGTTCTGACAACGAGGTGCGGTTCTTTCCT +
Preference number: 6 (lower is better)
Translates to: LAQGHTRCRWQS*GCSDNEVRFFP
Trigger: AGGAAAGAACCGCACCTCGTTGTCAGAACAACCCCAGCTCTGCCACCTACACCTTGTGTGACCTTGGGCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CCA 72 bp GGCAAGAACAAACAGGACTTGCTGATGGAGTCGGTATaGGGTGGGGGTGCAATAAGGGACATTGACCCTCAG +
Preference number: 6 (lower is better)
Translates to: GKNKQDLLMESV*GGGAIRDIDPQ
Trigger: CTGAGGGTCAATGTCCCTTATTGCACCCCCACCCCATACCGACTCCATCAGCAAGTCCTGTTTGTTCTTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS CAA 72 bp CGTGACGAGATTGTGCATCTGAGAAGTTTCTCTGACTaGCCCAAGGTCACACAAGGTGTAGGTGGCAGAGCT +
Preference number: 6 (lower is better)
Translates to: RDEIVHLRSFSD*PKVTQGVGGRA
Trigger: AGCTCTGCCACCTACACCTTGTGTGACCTTGGGCAAGTCAGAGAAACTTCTCAGATGCACAATCTCGTCACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000435044.2
CDS TCA 72 bp GGCTTGGAAACTAGGAGCGTGACGAGATTGTGCATCTaGGAAGTTTCTCTGACTTGCCCAAGGTCACACAAG +
Preference number: 6 (lower is better)
Translates to: GLETRSVTRLCI*EVSLTCPRSHK
Trigger: CTTGTGTGACCTTGGGCAAGTCAGAGAAACTTCTCAGATGCACAATCTCGTCACGCTCCTAGTTTCCAAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000435044.2