Pregenerated sensors for LINC00383 (Homo sapiens)
Ensembl gene IDs: ENSG00000235221Ensembl transcript IDs: ENST00000431686.1, ENST00000433664.1, ENST00000648574.1, ENST00000657223.1
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CAGTTGGTGCTGAAGTTCCTCTTCCAAGCTCACTTATGTGACTCTTaGGGGAGGGGGAGGCTTCAGGTCCTGGCCTCTTCCTGTGCCTCT | + |
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Preference number: 5 (lower is better) Translates to: QLVLKFLFQAHLCDS*GRGRLQVLASSCAS Trigger: AGAGGCACAGGAAGAGGCCAGGACCTGAAGCCTCCCCCTCCCCCAAGAGTCACATAAGTGAGCTTGGAAGAGGAACTTCAGCACCAACTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000433664.1 |
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| CDS TCA 90 bp | ACATTGCCAGTTGGTGCTGAAGTTCCTCTTCCAAGCTCACTTATGTaGCTCTTGGGGGAGGGGGAGGCTTCAGGTCCTGGCCTCTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: TLPVGAEVPLPSSLM*LLGEGEASGPGLFL Trigger: CAGGAAGAGGCCAGGACCTGAAGCCTCCCCCTCCCCCAAGAGTCACATAAGTGAGCTTGGAAGAGGAACTTCAGCACCAACTGGCAATGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000433664.1 |
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| CDS TCA 90 bp | AAATGTTACCAGGGGTCCTTGTTCACAGAACTCCCAAGACGGTGGTaGGCCACTTCCAAGATGGTGGCAGGCTGCTTCCAAGATGGTGGC | + |
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Preference number: 5 (lower is better) Translates to: KCYQGSLFTELPRRW*ATSKMVAGCFQDGG Trigger: GCCACCATCTTGGAAGCAGCCTGCCACCATCTTGGAAGTGGCTCACCACCGTCTTGGGAGTTCTGTGAACAAGGACCCCTGGTAACATTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000648574.1 ENST00000657223.1 |
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| CDS TCA 90 bp | GCAAACAGTAGTGGTGGACGGCAAGTGAAAGCTCAGCTCAAGCCGTaGCAAATATGGACCAGAAGAGTGCAATTGCAAGATTTAATAGAG | + |
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Preference number: 5 (lower is better) Translates to: ANSSGGRQVKAQLKP*QIWTRRVQLQDLIE Trigger: CTCTATTAAATCTTGCAATTGCACTCTTCTGGTCCATATTTGTCACGGCTTGAGCTGAGCTTTCACTTGCCGTCCACCACTACTGTTTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657223.1 |
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| CDS CCA 90 bp | TACATAGTTTCTAAGGCTCAGGTATCTGGAAGGGGCTTATTTAGGTaGTTCTGGTTCAGGGTCTTTCACGCAGCACTAGTTACATTGCCA | + |
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Preference number: 5 (lower is better) Translates to: YIVSKAQVSGRGLFR*FWFRVFHAALVTLP Trigger: TGGCAATGTAACTAGTGCTGCGTGAAAGACCCTGAACCAGAACCACCTAAATAAGCCCCTTCCAGATACCTGAGCCTTAGAAACTATGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433664.1 |
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| CDS CCA 90 bp | TGTAATATTGGCTCTATTCTTCATATAGCTTTGGATGTCCCTTCGTaGTCGCCAAAATGTTACCAGGGGTCCTTGTTCACAGAACTCCCA | + |
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Preference number: 5 (lower is better) Translates to: CNIGSILHIALDVPS*SPKCYQGSLFTELP Trigger: TGGGAGTTCTGTGAACAAGGACCCCTGGTAACATTTTGGCGACCACGAAGGGACATCCAAAGCTATATGAAGAATAGAGCCAATATTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000433664.1 ENST00000657223.1 |
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| CDS TCA 90 bp | CAGTTTGCTTGTGATCCAATTAGTCCATGGTCCTTTCAGAAACTGTaGATCTTAAATCAAGAAGATGCTCTCCACCTTGTCCAGAGTTCA | + |
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Preference number: 5 (lower is better) Translates to: QFACDPISPWSFQKL*ILNQEDALHLVQSS Trigger: TGAACTCTGGACAAGGTGGAGAGCATCTTCTTGATTTAAGATTCACAGTTTCTGAAAGGACCATGGACTAATTGGATCACAAGCAAACTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648574.1 |
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| CDS GCA 90 bp | GAAGTAATCTTGAGAGGTTTCCATTATAGTGTGTCCCAAATTGGTTaGAGGTATAGATTGATATTGTTCATCTCTGCCCTTTTGTCAGAT | + |
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Preference number: 5 (lower is better) Translates to: EVILRGFHYSVSQIG*RYRLILFISALLSD Trigger: ATCTGACAAAAGGGCAGAGATGAACAATATCAATCTATACCTGCAACCAATTTGGGACACACTATAATGGAAACCTCTCAAGATTACTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648574.1 |
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| CDS TCA 72 bp | GTTGGTGCTGAAGTTCCTCTTCCAAGCTCACTTATGTaGCTCTTGGGGGAGGGGGAGGCTTCAGGTCCTGGC | + |
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Preference number: 6 (lower is better) Translates to: VGAEVPLPSSLM*LLGEGEASGPG Trigger: GCCAGGACCTGAAGCCTCCCCCTCCCCCAAGAGTCACATAAGTGAGCTTGGAAGAGGAACTTCAGCACCAAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000433664.1 |
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| CDS CCA 72 bp | TGTCACTATGCTCCCCTGGCTAGAGTGCGAGTGCAGTaGCTCTTCGCAGGTGCCATGATAGTGCACTGCAAC | + |
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Preference number: 6 (lower is better) Translates to: CHYAPLARVRVQ*LFAGAMIVHCN Trigger: GTTGCAGTGCACTATCATGGCACCTGCGAAGAGCCACTGCACTCGCACTCTAGCCAGGGGAGCATAGTGACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000431686.1 ENST00000648574.1 ENST00000657223.1 |
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| CDS CCA 72 bp | CTGAAGTTCCTCTTCCAAGCTCACTTATGTGACTCTTaGGGGAGGGGGAGGCTTCAGGTCCTGGCCTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: LKFLFQAHLCDS*GRGRLQVLASS Trigger: GGAAGAGGCCAGGACCTGAAGCCTCCCCCTCCCCCAAGAGTCACATAAGTGAGCTTGGAAGAGGAACTTCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000433664.1 |
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| CDS CCA 72 bp | CACTTCCAAGATGGTGGCAGGCTGCTTCCAAGATGGTaGCAAGCCTCGTGTTCTCTGACCTGGGGTTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: HFQDGGRLLPRW*QASCSLTWGSW Trigger: CCAAGAACCCCAGGTCAGAGAACACGAGGCTTGCCACCATCTTGGAAGCAGCCTGCCACCATCTTGGAAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657223.1 |
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| CDS CCA 72 bp | AGCCACTTCCAAGATGGTGGCAGGCTGCTTCCAAGATaGTGGCAAGCCTCGTGTTCTCTGACCTGGGGTTCT | + |
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Preference number: 6 (lower is better) Translates to: SHFQDGGRLLPR*WQASCSLTWGS Trigger: AGAACCCCAGGTCAGAGAACACGAGGCTTGCCACCATCTTGGAAGCAGCCTGCCACCATCTTGGAAGTGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657223.1 |
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| CDS CCA 72 bp | TGGTGGCAAGCCTCGTGTTCTCTGACCTGGGGTTCTTaGCCTCACGGATTCCAAGGAATGGAATATTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: WWQASCSLTWGS*PHGFQGMEYWA Trigger: GGCCCAATATTCCATTCCTTGGAATCCGTGAGGCCAAGAACCCCAGGTCAGAGAACACGAGGCTTGCCACCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657223.1 |
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| CDS CAA 72 bp | ATGGTGGCAAGCCTCGTGTTCTCTGACCTGGGGTTCTaGGCCTCACGGATTCCAAGGAATGGAATATTGGGC | + |
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Preference number: 6 (lower is better) Translates to: MVASLVFSDLGF*ASRIPRNGILG Trigger: GCCCAATATTCCATTCCTTGGAATCCGTGAGGCCAAGAACCCCAGGTCAGAGAACACGAGGCTTGCCACCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657223.1 |
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| CDS TCA 72 bp | AGTGGTGGACGGCAAGTGAAAGCTCAGCTCAAGCCGTaGCAAATATGGACCAGAAGAGTGCAATTGCAAGAT | + |
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Preference number: 6 (lower is better) Translates to: SGGRQVKAQLKP*QIWTRRVQLQD Trigger: ATCTTGCAATTGCACTCTTCTGGTCCATATTTGTCACGGCTTGAGCTGAGCTTTCACTTGCCGTCCACCACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657223.1 |
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| CDS GCA 72 bp | GCTGGGACTCCAGGTGCATGTCACTATGCCCGGCTTTaGAGCATTATTTATAAGCAGAAGCCCAGAAGTAAT | + |
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Preference number: 6 (lower is better) Translates to: AGTPGACHYARL*SIIYKQKPRSN Trigger: ATTACTTCTGGGCTTCTGCTTATAAATAATGCTGCAAAGCCGGGCATAGTGACATGCACCTGGAGTCCCAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648574.1 |
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| CDS CCA 72 bp | GCTCAGGTATCTGGAAGGGGCTTATTTAGGTGGTTCTaGTTCAGGGTCTTTCACGCAGCACTAGTTACATTG | + |
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Preference number: 6 (lower is better) Translates to: AQVSGRGLFRWF*FRVFHAALVTL Trigger: CAATGTAACTAGTGCTGCGTGAAAGACCCTGAACCAGAACCACCTAAATAAGCCCCTTCCAGATACCTGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433664.1 |
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| CDS CCA 72 bp | TCTAAGGCTCAGGTATCTGGAAGGGGCTTATTTAGGTaGTTCTGGTTCAGGGTCTTTCACGCAGCACTAGTT | + |
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Preference number: 6 (lower is better) Translates to: SKAQVSGRGLFR*FWFRVFHAALV Trigger: AACTAGTGCTGCGTGAAAGACCCTGAACCAGAACCACCTAAATAAGCCCCTTCCAGATACCTGAGCCTTAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433664.1 |
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| CDS CCA 72 bp | GGCTCTATTCTTCATATAGCTTTGGATGTCCCTTCGTaGTCGCCAAAATGTTACCAGGGGTCCTTGTTCACA | + |
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Preference number: 6 (lower is better) Translates to: GSILHIALDVPS*SPKCYQGSLFT Trigger: TGTGAACAAGGACCCCTGGTAACATTTTGGCGACCACGAAGGGACATCCAAAGCTATATGAAGAATAGAGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000433664.1 ENST00000657223.1 |
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| CDS GCA 72 bp | CCCGGCTTTGCAGCATTATTTCTTAAATCAAGAAGATaGTCTCCACCTTGTCCAGAGTTCACTTCAAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: PGFAALFLKSRR*SPPCPEFTSSS Trigger: GCTGCTTGAAGTGAACTCTGGACAAGGTGGAGAGCATCTTCTTGATTTAAGAAATAATGCTGCAAAGCCGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657223.1 |
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| CDS CAA 72 bp | GGGTTCTTGGCCTCACGGATTCCAAGGAATGGAATATaGGGCCATGTGGTGAGTGTTATAGCTCTATTAGAA | + |
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Preference number: 6 (lower is better) Translates to: GFLASRIPRNGI*GHVVSVIALLE Trigger: TTCTAATAGAGCTATAACACTCACCACATGGCCCAATATTCCATTCCTTGGAATCCGTGAGGCCAAGAACCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657223.1 |
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| CDS GCA 72 bp | GCTTCCCTTACTGCAAGATATCTTAAATCAAGAAGATaGTCTCCACCTTGTCCAGAGTTCACTTCAAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: ASLTARYLKSRR*SPPCPEFTSSS Trigger: GCTGCTTGAAGTGAACTCTGGACAAGGTGGAGAGCATCTTCTTGATTTAAGATATCTTGCAGTAAGGGAAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433664.1 |
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| CDS CAA 90 bp | CCCGGCTTTGCAGCATTATTTATAAGCAGAAGCCCAGAAGTAATCTaGAGAGGTTTCCATTATAGTGTGTCCCAAATTGGTTGCAGGTAT | + |
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Preference number: 6 (lower is better) Translates to: PGFAALFISRSPEVI*RGFHYSVSQIGCRY Trigger: ATACCTGCAACCAATTTGGGACACACTATAATGGAAACCTCTCAAGATTACTTCTGGGCTTCTGCTTATAAATAATGCTGCAAAGCCGGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648574.1 |
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| CDS TCA 72 bp | TGGACCAGAAGAGTGCAATTGCAAGATTTAATAGAGTaGAACACAGTGAAAACAGAGCTCCTATACAAAGGG | + |
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Preference number: 6 (lower is better) Translates to: WTRRVQLQDLIE*NTVKTELLYKG Trigger: CCCTTTGTATAGGAGCTCTGTTTTCACTGTGTTTCACTCTATTAAATCTTGCAATTGCACTCTTCTGGTCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657223.1 |
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| CDS GCA 72 bp | TTGAGAGGTTTCCATTATAGTGTGTCCCAAATTGGTTaGAGGTATAGATTGATATTGTTCATCTCTGCCCTT | + |
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Preference number: 6 (lower is better) Translates to: LRGFHYSVSQIG*RYRLILFISAL Trigger: AAGGGCAGAGATGAACAATATCAATCTATACCTGCAACCAATTTGGGACACACTATAATGGAAACCTCTCAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648574.1 |
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| CDS CAA 72 bp | GCAGCATTATTTATAAGCAGAAGCCCAGAAGTAATCTaGAGAGGTTTCCATTATAGTGTGTCCCAAATTGGT | + |
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Preference number: 6 (lower is better) Translates to: AALFISRSPEVI*RGFHYSVSQIG Trigger: ACCAATTTGGGACACACTATAATGGAAACCTCTCAAGATTACTTCTGGGCTTCTGCTTATAAATAATGCTGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648574.1 |
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| CDS CAA 72 bp | CATTATAGTGTGTCCCAAATTGGTTGCAGGTATAGATaGATATTGTTCATCTCTGCCCTTTTGTCAGATGAT | + |
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Preference number: 6 (lower is better) Translates to: HYSVSQIGCRYR*ILFISALLSDD Trigger: ATCATCTGACAAAAGGGCAGAGATGAACAATATCAATCTATACCTGCAACCAATTTGGGACACACTATAATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648574.1 |
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| CDS TCA 72 bp | ATTATAGTGTGTCCCAAATTGGTTGCAGGTATAGATTaGTATTGTTCATCTCTGCCCTTTTGTCAGATGATT | + |
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Preference number: 6 (lower is better) Translates to: IIVCPKLVAGID*YCSSLPFCQMI Trigger: AATCATCTGACAAAAGGGCAGAGATGAACAATATCAATCTATACCTGCAACCAATTTGGGACACACTATAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648574.1 |
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