Pregenerated sensors for LINC00382 (Homo sapiens)
Ensembl gene IDs: ENSG00000229175Ensembl transcript IDs: ENST00000427918.2, ENST00000657824.1, ENST00000658610.1, ENST00000660928.1, ENST00000661565.1, ENST00000663622.1, ENST00000667336.1, ENST00000667673.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GTACTCCAAGGAGCTAGGAGGGGATTAGTAGCAGCAGCAGTATCTTaGCAAAAGGAGTCTTGGACCAGCTTTGACCAACAAGCAGGGCTT | + |
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Preference number: 5 (lower is better) Translates to: VLQGARRGLVAAAVS*QKESWTSFDQQAGL Trigger: AAGCCCTGCTTGTTGGTCAAAGCTGGTCCAAGACTCCTTTTGCCAAGATACTGCTGCTGCTACTAATCCCCTCCTAGCTCCTTGGAGTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000663622.1 |
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| CDS GCA 90 bp | TTCCTTGCCTTTGAGCTTTTTGTCCCTAAGTCCCTCCTGTTGCTCTaGTATGAAGTATGGGCAATCTGCATCCTTCTGACTGAGCCTGGA | + |
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Preference number: 5 (lower is better) Translates to: FLAFELFVPKSLLLL*YEVWAICILLTEPG Trigger: TCCAGGCTCAGTCAGAAGGATGCAGATTGCCCATACTTCATAGCAGAGCAACAGGAGGGACTTAGGGACAAAAAGCTCAAAGGCAAGGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000663622.1 |
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| CDS GCA 90 bp | CAAGAGGTCTCTAGTGTTCTCTATGCACAGCCAAGTGCAGTTTTCTaGCCTTCTCTAATGCCATGTCTGTGTCCTAAAGAGGAGAGCAAA | + |
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Preference number: 5 (lower is better) Translates to: QEVSSVLYAQPSAVF*PSLMPCLCPKEESK Trigger: TTTGCTCTCCTCTTTAGGACACAGACATGGCATTAGAGAAGGGCAGAAAACTGCACTTGGCTGTGCATAGAGAACACTAGAGACCTCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000427918.2 ENST00000657824.1 ENST00000658610.1 ENST00000660928.1 ENST00000661565.1 ENST00000663622.1 ENST00000667336.1 ENST00000667673.1 |
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| CDS CCA 90 bp | GAGCTTTTTGTCCCTAAGTCCCTCCTGTTGCTCTGCTATGAAGTATaGGCAATCTGCATCCTTCTGACTGAGCCTGGATCTAGATTAAGA | + |
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Preference number: 5 (lower is better) Translates to: ELFVPKSLLLLCYEV*AICILLTEPGSRLR Trigger: TCTTAATCTAGATCCAGGCTCAGTCAGAAGGATGCAGATTGCCCATACTTCATAGCAGAGCAACAGGAGGGACTTAGGGACAAAAAGCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000663622.1 |
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| CDS GCA 90 bp | CTCTTCCTTCCTCTGTGGCCTTTGGCAAGACTCTTAGCCTCTCTGTaGCTGTTTAACTTCATAGACTTGTCTTCGCTGACATTAATACAT | + |
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Preference number: 5 (lower is better) Translates to: LFLPLWPLARLLASL*LFNFIDLSSLTLIH Trigger: ATGTATTAATGTCAGCGAAGACAAGTCTATGAAGTTAAACAGGCACAGAGAGGCTAAGAGTCTTGCCAAAGGCCACAGAGGAAGGAAGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000427918.2 ENST00000657824.1 ENST00000658610.1 ENST00000660928.1 ENST00000661565.1 ENST00000663622.1 ENST00000667336.1 |
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| CDS GCA 90 bp | CTTGTAGGTCTTTCAGGACTAGATCTGGGCAAATTCCCTTTTATGTaGCCATTCTTCGCTTTCTCTCTCACTTCAACTTTGTCTGTAAGA | + |
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Preference number: 5 (lower is better) Translates to: LVGLSGLDLGKFPFM*PFFAFSLTSTLSVR Trigger: TCTTACAGACAAAGTTGAAGTGAGAGAGAAAGCGAAGAATGGGCACATAAAAGGGAATTTGCCCAGATCTAGTCCTGAAAGACCTACAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663622.1 |
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| CDS CCA 90 bp | CTTAACCCTATTGTGGAGATATGCTTACTACTCTTACTGAAATGTTaGCCAAGAAGACACAGACATTGTAGCGGTCTCAAAACCCATGCT | + |
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Preference number: 5 (lower is better) Translates to: LNPIVEICLLLLLKC*PRRHRHCSGLKTHA Trigger: AGCATGGGTTTTGAGACCGCTACAATGTCTGTGTCTTCTTGGCCAACATTTCAGTAAGAGTAGTAAGCATATCTCCACAATAGGGTTAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000427918.2 ENST00000657824.1 ENST00000658610.1 ENST00000660928.1 ENST00000661565.1 ENST00000663622.1 ENST00000667336.1 ENST00000667673.1 |
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| CDS TCA 90 bp | CTGGTTCTCTTAACCCTATTGTGGAGATATGCTTACTACTCTTACTaGAATGTTGGCCAAGAAGACACAGACATTGTAGCGGTCTCAAAA | + |
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Preference number: 5 (lower is better) Translates to: LVLLTLLWRYAYYSY*NVGQEDTDIVAVSK Trigger: TTTTGAGACCGCTACAATGTCTGTGTCTTCTTGGCCAACATTTCAGTAAGAGTAGTAAGCATATCTCCACAATAGGGTTAAGAGAACCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000427918.2 ENST00000657824.1 ENST00000658610.1 ENST00000660928.1 ENST00000661565.1 ENST00000663622.1 ENST00000667336.1 ENST00000667673.1 |
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| CDS GCA 90 bp | TGTTTTTCAGAAGACACTGGTTCTCTTAACCCTATTGTGGAGATATaGTTACTACTCTTACTGAAATGTTGGCCAAGAAGACACAGACAT | + |
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Preference number: 5 (lower is better) Translates to: CFSEDTGSLNPIVEI*LLLLLKCWPRRHRH Trigger: ATGTCTGTGTCTTCTTGGCCAACATTTCAGTAAGAGTAGTAAGCATATCTCCACAATAGGGTTAAGAGAACCAGTGTCTTCTGAAAAACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 8 transcripts: ENST00000427918.2 ENST00000657824.1 ENST00000658610.1 ENST00000660928.1 ENST00000661565.1 ENST00000663622.1 ENST00000667336.1 ENST00000667673.1 |
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| CDS CCA 72 bp | GGAGCTAGGAGGGGATTAGTAGCAGCAGCAGTATCTTaGCAAAAGGAGTCTTGGACCAGCTTTGACCAACAA | + |
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Preference number: 6 (lower is better) Translates to: GARRGLVAAAVS*QKESWTSFDQQ Trigger: TTGTTGGTCAAAGCTGGTCCAAGACTCCTTTTGCCAAGATACTGCTGCTGCTACTAATCCCCTCCTAGCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000663622.1 |
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| CDS GCA 72 bp | CCTCTGTGGCCTTTGGCAAGACTCTTAGCCTCTCTGTaGCTGTTTAACTTCATAGACTTGTCTTCGCTGACA | + |
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Preference number: 6 (lower is better) Translates to: PLWPLARLLASL*LFNFIDLSSLT Trigger: TGTCAGCGAAGACAAGTCTATGAAGTTAAACAGGCACAGAGAGGCTAAGAGTCTTGCCAAAGGCCACAGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000427918.2 ENST00000657824.1 ENST00000658610.1 ENST00000660928.1 ENST00000661565.1 ENST00000663622.1 ENST00000667336.1 |
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| CDS CCA 72 bp | AAAGTTTGTTCCAGATTTAGTCTCTTCCTTCCTCTGTaGCCTTTGGCAAGACTCTTAGCCTCTCTGTGCCTG | + |
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Preference number: 6 (lower is better) Translates to: KVCSRFSLFLPL*PLARLLASLCL Trigger: CAGGCACAGAGAGGCTAAGAGTCTTGCCAAAGGCCACAGAGGAAGGAAGAGACTAAATCTGGAACAAACTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000427918.2 ENST00000657824.1 ENST00000658610.1 ENST00000660928.1 ENST00000661565.1 ENST00000663622.1 ENST00000667336.1 |
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| CDS GCA 72 bp | TTTGAGCTTTTTGTCCCTAAGTCCCTCCTGTTGCTCTaGTATGAAGTATGGGCAATCTGCATCCTTCTGACA | + |
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Preference number: 6 (lower is better) Translates to: FELFVPKSLLLL*YEVWAICILLT Trigger: TGTCAGAAGGATGCAGATTGCCCATACTTCATAGCAGAGCAACAGGAGGGACTTAGGGACAAAAAGCTCAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000427918.2 ENST00000658610.1 |
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| CDS GCA 72 bp | TCTAGTGTTCTCTATGCACAGCCAAGTGCAGTTTTCTaGCCTTCTCTAATGCCATGTCTGTGTCCTAAAGAG | + |
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Preference number: 6 (lower is better) Translates to: SSVLYAQPSAVF*PSLMPCLCPKE Trigger: CTCTTTAGGACACAGACATGGCATTAGAGAAGGGCAGAAAACTGCACTTGGCTGTGCATAGAGAACACTAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000427918.2 ENST00000657824.1 ENST00000658610.1 ENST00000660928.1 ENST00000661565.1 ENST00000663622.1 ENST00000667336.1 ENST00000667673.1 |
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| CDS GCA 72 bp | TTTCCTCTTTTTGTCCCTAAGTCCCTCCTGTTGCTCTaGTATGAAGTATGGGCAATCTGCATCCTTCTGACA | + |
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Preference number: 6 (lower is better) Translates to: FPLFVPKSLLLL*YEVWAICILLT Trigger: TGTCAGAAGGATGCAGATTGCCCATACTTCATAGCAGAGCAACAGGAGGGACTTAGGGACAAAAAGAGGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000660928.1 ENST00000667336.1 ENST00000667673.1 |
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| CDS GCA 72 bp | TTTGAGCTTTTTGTCCCTAAGTCCCTCCTGTTGCTCTaGTATGAAGTATGGGCAATCTGCATCCTTCTGACT | + |
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Preference number: 6 (lower is better) Translates to: FELFVPKSLLLL*YEVWAICILLT Trigger: AGTCAGAAGGATGCAGATTGCCCATACTTCATAGCAGAGCAACAGGAGGGACTTAGGGACAAAAAGCTCAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000663622.1 |
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| CDS GCA 72 bp | TTTCCTCTTTTTGTCCCTAAGTCCCTCCTGTTGCTCTaGTATGAAGTATGGGCAATCTGCATCCTTCTGACT | + |
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Preference number: 6 (lower is better) Translates to: FPLFVPKSLLLL*YEVWAICILLT Trigger: AGTCAGAAGGATGCAGATTGCCCATACTTCATAGCAGAGCAACAGGAGGGACTTAGGGACAAAAAGAGGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657824.1 |
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| CDS TCA 72 bp | TGGATCCACAGACAGTCCAAATATTTTAAGCTTCCATaGCAAGAGGAAGCATGGTTTAGTGGTTTCTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: WIHRQSKYFKLP*QEEAWFSGFFW Trigger: CCAGAAGAAACCACTAAACCATGCTTCCTCTTGTCATGGAAGCTTAAAATATTTGGACTGTCTGTGGATCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000427918.2 ENST00000657824.1 ENST00000663622.1 ENST00000667336.1 |
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| CDS GCA 72 bp | GAAGACACTGGTTCTCTTAACCCTATTGTGGAGATATaGTTACTACTCTTACTGAAATGTTGGCCAAGAAGA | + |
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Preference number: 6 (lower is better) Translates to: EDTGSLNPIVEI*LLLLLKCWPRR Trigger: TCTTCTTGGCCAACATTTCAGTAAGAGTAGTAAGCATATCTCCACAATAGGGTTAAGAGAACCAGTGTCTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000427918.2 ENST00000657824.1 ENST00000658610.1 ENST00000660928.1 ENST00000661565.1 ENST00000663622.1 ENST00000667336.1 ENST00000667673.1 |
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| CDS TCA 72 bp | TTTAAACGTAGTTTGATCAAATATTTTAAGCTTCCATaGCAAGAGGAAGCATGGTTTAGTGGTTTCTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: FKRSLIKYFKLP*QEEAWFSGFFW Trigger: CCAGAAGAAACCACTAAACCATGCTTCCTCTTGTCATGGAAGCTTAAAATATTTGATCAAACTACGTTTAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000658610.1 ENST00000660928.1 ENST00000661565.1 |
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