Pregenerated sensors for LINC00380 (Homo sapiens)

Ensembl gene IDs: ENSG00000234625

Ensembl transcript IDs: ENST00000442478.1

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GTTCTATGTTGTATTGTTCCAATAGGAACCAAAGCAAGGGCCTCCTaGGTCCTCCAGCTTGTTATTTGGCTGATCAGAGGCCTTATCCGT	+
Preference number: 5 (lower is better) Translates to: VLCCIVPIGTKARAS*VLQLVIWLIRGLIR Trigger: ACGGATAAGGCCTCTGATCAGCCAAATAACAAGCTGGAGGACTCAGGAGGCCCTTGCTTTGGTTCCTATTGGAACAATACAACATAGAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000442478.1
CDS GCA 90 bp	CTTAGCAATTTACATCACTTTAAATTAACTCAGCAAGTCATCCTTTaGCCTGTGCAAATCTTCCAGGCGTCCTTTTGTATTTCCTTTGCC	+
Preference number: 5 (lower is better) Translates to: LSNLHHFKLTQQVIL*PVQIFQASFCISFA Trigger: GGCAAAGGAAATACAAAAGGACGCCTGGAAGATTTGCACAGGGCAAAGGATGACTTGCTGAGTTAATTTAAAGTGATGTAAATTGCTAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000442478.1
CDS CAA 72 bp	CATCCTTTGCCCTGTGCAAATCTTCCAGGCGTCCTTTaGTATTTCCTTTGCCCTTTTCTTGGCCCTGTTCTA	+
Preference number: 6 (lower is better) Translates to: HPLPCANLPGVL*YFLCPFLGPVL Trigger: TAGAACAGGGCCAAGAAAAGGGCAAAGGAAATACAAAAGGACGCCTGGAAGATTTGCACAGGGCAAAGGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000442478.1
CDS CAA 90 bp	TCCTTTGCCCTGTGCAAATCTTCCAGGCGTCCTTTTGTATTTCCTTaGCCCTTTTCTTGGCCCTGTTCTATGTTGTATTGTTCCAATAGG	+
Preference number: 6 (lower is better) Translates to: SFALCKSSRRPFVFP*PFSWPCSMLYCSNR Trigger: CCTATTGGAACAATACAACATAGAACAGGGCCAAGAAAAGGGCAAAGGAAATACAAAAGGACGCCTGGAAGATTTGCACAGGGCAAAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000442478.1
CDS CAA 72 bp	GTATTTCCTTTGCCCTTTTCTTGGCCCTGTTCTATGTaGTATTGTTCCAATAGGAACCAAAGCAAGGGCCTC	+
Preference number: 6 (lower is better) Translates to: VFPLPFSWPCSM*YCSNRNQSKGL Trigger: GAGGCCCTTGCTTTGGTTCCTATTGGAACAATACAACATAGAACAGGGCCAAGAAAAGGGCAAAGGAAATAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000442478.1
CDS CAA 72 bp	CTGTGCAAATCTTCCAGGCGTCCTTTTGTATTTCCTTaGCCCTTTTCTTGGCCCTGTTCTATGTTGTATTGT	+
Preference number: 6 (lower is better) Translates to: LCKSSRRPFVFP*PFSWPCSMLYC Trigger: ACAATACAACATAGAACAGGGCCAAGAAAAGGGCAAAGGAAATACAAAAGGACGCCTGGAAGATTTGCACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000442478.1
CDS GCA 72 bp	TTACATCACTTTAAATTAACTCAGCAAGTCATCCTTTaGCCTGTGCAAATCTTCCAGGCGTCCTTTTGTATT	+
Preference number: 6 (lower is better) Translates to: LHHFKLTQQVIL*PVQIFQASFCI Trigger: AATACAAAAGGACGCCTGGAAGATTTGCACAGGGCAAAGGATGACTTGCTGAGTTAATTTAAAGTGATGTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000442478.1

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