Pregenerated sensors for LINC00378 (Homo sapiens)
Ensembl gene IDs: ENSG00000225249Ensembl transcript IDs: ENST00000413402.5, ENST00000455894.1, ENST00000654911.1, ENST00000656826.1, ENST00000656845.1, ENST00000658247.1, ENST00000662792.1, ENST00000663355.1, ENST00000666620.1, ENST00000669309.1
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGGATGGAGAAATATCTGAGAGGCTGCTCCACCACGTGCCGCAACTaGGTTTCTTGGGTAATCTCTCAGGGACTCTCCAACCAGCCACTC | + |
|
Preference number: 5 (lower is better) Translates to: GMEKYLRGCSTTCRN*VSWVISQGLSNQPL Trigger: GAGTGGCTGGTTGGAGAGTCCCTGAGAGATTACCCAAGAAACTCAGTTGCGGCACGTGGTGGAGCAGCCTCTCAGATATTTCTCCATCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669309.1 |
||
| CDS TCA 90 bp | ATCCCTAAAAATCTCCTGAGAGGCTGCTCCACCACGTGCCGCAACTaGGTTTCTTGGGTAATCTCTCAGGGACTCTCCAACCAGCCACTC | + |
|
Preference number: 5 (lower is better) Translates to: IPKNLLRGCSTTCRN*VSWVISQGLSNQPL Trigger: GAGTGGCTGGTTGGAGAGTCCCTGAGAGATTACCCAAGAAACTCAGTTGCGGCACGTGGTGGAGCAGCCTCTCAGGAGATTTTTAGGGAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000413402.5 |
||
| CDS TCA 90 bp | TTAGAACTCCATTTTCTGAGAGGCTGCTCCACCACGTGCCGCAACTaGGTTTCTTGGGTAATCTCTCAGGGACTCTCCAACCAGCCACTC | + |
|
Preference number: 5 (lower is better) Translates to: LELHFLRGCSTTCRN*VSWVISQGLSNQPL Trigger: GAGTGGCTGGTTGGAGAGTCCCTGAGAGATTACCCAAGAAACTCAGTTGCGGCACGTGGTGGAGCAGCCTCTCAGAAAATGGAGTTCTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000455894.1 |
||
| CDS GCA 90 bp | TGCAAATGTTTCATTCGTGATTTAGAGAGATGGCCCAGTGATCCCTaGCACCTGGTATTCATGTCCTTGTGGAGCCCTGTTCCATGCTGT | + |
|
Preference number: 5 (lower is better) Translates to: CKCFIRDLERWPSDP*HLVFMSLWSPVPCC Trigger: ACAGCATGGAACAGGGCTCCACAAGGACATGAATACCAGGTGGCAGGGATCACTGGGCCATCTCTCTAAATCACGAATGAAACATTTGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000662792.1 ENST00000663355.1 ENST00000669309.1 |
||
| CDS CCA 90 bp | TTGGGAGACACAGGTTGCAAATGTTTCATTCGTGATTTAGAGAGATaGCCCAGTGATCCCTGCCACCTGGTATTCATGTCCTTGTGGAGC | + |
|
Preference number: 5 (lower is better) Translates to: LGDTGCKCFIRDLER*PSDPCHLVFMSLWS Trigger: GCTCCACAAGGACATGAATACCAGGTGGCAGGGATCACTGGGCCATCTCTCTAAATCACGAATGAAACATTTGCAACCTGTGTCTCCCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000654911.1 ENST00000658247.1 ENST00000662792.1 ENST00000663355.1 ENST00000669309.1 |
||
| CDS CCA 90 bp | GAACAGATGACATGTTCAGCTCAGCTTCAACTACTTCTTACCAGTTaGAAGACACCAAGGTTTCCTCTGCTCCTCCATCCTCTCCTTTTA | + |
|
Preference number: 5 (lower is better) Translates to: EQMTCSAQLQLLLTS*KTPRFPLLLHPLLL Trigger: TAAAAGGAGAGGATGGAGGAGCAGAGGAAACCTTGGTGTCTTCCAACTGGTAAGAAGTAGTTGAAGCTGAGCTGAACATGTCATCTGTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658247.1 |
||
| CDS TCA 90 bp | CATAGGCTCAAAGTAGAGGGATGGAGAAATATTTTTCACCTCCAGTaGAGCTCTAATTGGTACCAAGCTGAAGACAAGCAGCAGGACCTT | + |
|
Preference number: 5 (lower is better) Translates to: HRLKVEGWRNIFHLQ*SSNWYQAEDKQQDL Trigger: AAGGTCCTGCTGCTTGTCTTCAGCTTGGTACCAATTAGAGCTTCACTGGAGGTGAAAAATATTTCTCCATCCCTCTACTTTGAGCCTATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000666620.1 |
||
| CDS CCA 90 bp | TCTTTACTTGCAACCAGCATCTCTGACGTCTTCACATCTCTGAAGTaGGTGCATGTTAAAGCAATGAACTTTTGCAAAGCAAGCCTCAAG | + |
|
Preference number: 5 (lower is better) Translates to: SLLATSISDVFTSLK*VHVKAMNFCKASLK Trigger: CTTGAGGCTTGCTTTGCAAAAGTTCATTGCTTTAACATGCACCCACTTCAGAGATGTGAAGACGTCAGAGATGCTGGTTGCAAGTAAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000666620.1 ENST00000669309.1 |
||
| CDS TCA 90 bp | AAAGAATATGTCGTTTGCTTAATTGTACAGGTCATTGGGAAATGGTaGGGAGGCAGTCTTGTAGTACTCTTTTCAAGTTCCATTGCACAC | + |
|
Preference number: 5 (lower is better) Translates to: KEYVVCLIVQVIGKW*GGSLVVLFSSSIAH Trigger: GTGTGCAATGGAACTTGAAAAGAGTACTACAAGACTGCCTCCTCACCATTTCCCAATGACCTGTACAATTAAGCAAACGACATATTCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000654911.1 ENST00000662792.1 |
||
| CDS TCA 90 bp | AGCATAGTGAGACTCCATCCCCTAATTGATAAATTTAAGAACAGATaGCATGTTCAGCTCAGCTTCAACTACTTCTTACCAGTTGGAAGA | + |
|
Preference number: 5 (lower is better) Translates to: SIVRLHPLIDKFKNR*HVQLSFNYFLPVGR Trigger: TCTTCCAACTGGTAAGAAGTAGTTGAAGCTGAGCTGAACATGTCATCTGTTCTTAAATTTATCAATTAGGGGATGGAGTCTCACTATGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658247.1 |
||
| CDS CCA 90 bp | ACAAGCAATCAAAGAATATGTCGTTTGCTTAATTGTACAGGTCATTaGGAAATGGTGAGGAGGCAGTCTTGTAGTACTCTTTTCAAGTTC | + |
|
Preference number: 5 (lower is better) Translates to: TSNQRICRLLNCTGH*EMVRRQSCSTLFKF Trigger: GAACTTGAAAAGAGTACTACAAGACTGCCTCCTCACCATTTCCCAATGACCTGTACAATTAAGCAAACGACATATTCTTTGATTGCTTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000654911.1 ENST00000662792.1 |
||
| CDS TCA 90 bp | CGTAGCTGGGAATTGAAACATCTAACAACGCATACTAATGAACTATaGGATTTAGTGTTCCAGGCCAACACACAAGCAATCAAAGAATAT | + |
|
Preference number: 5 (lower is better) Translates to: RSWELKHLTTHTNEL*DLVFQANTQAIKEY Trigger: ATATTCTTTGATTGCTTGTGTGTTGGCCTGGAACACTAAATCTCATAGTTCATTAGTATGCGTTGTTAGATGTTTCAATTCCCAGCTACG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654911.1 ENST00000662792.1 |
||
| CDS GCA 90 bp | GTCTTCACATCTCTGAAGTGGGTGCATGTTAAAGCAATGAACTTTTaGAAAGCAAGCCTCAAGAACACTGATTTTTCCTTAAATGTAACA | + |
|
Preference number: 5 (lower is better) Translates to: VFTSLKWVHVKAMNF*KASLKNTDFSLNVT Trigger: TGTTACATTTAAGGAAAAATCAGTGTTCTTGAGGCTTGCTTTGCAAAAGTTCATTGCTTTAACATGCACCCACTTCAGAGATGTGAAGAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000666620.1 ENST00000669309.1 |
||
| CDS CAA 72 bp | GAGAGGCTGCTCCACCACGTGCCGCAACTGAGTTTCTaGGGTAATCTCTCAGGGACTCTCCAACCAGCCACT | + |
|
Preference number: 6 (lower is better) Translates to: ERLLHHVPQLSF*GNLSGTLQPAT Trigger: AGTGGCTGGTTGGAGAGTCCCTGAGAGATTACCCAAGAAACTCAGTTGCGGCACGTGGTGGAGCAGCCTCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000413402.5 ENST00000455894.1 ENST00000669309.1 |
||
| CDS CAA 90 bp | AAATCTCCTGAGAGGCTGCTCCACCACGTGCCGCAACTGAGTTTCTaGGGTAATCTCTCAGGGACTCTCCAACCAGCCACTCAGCAACCG | + |
|
Preference number: 6 (lower is better) Translates to: KSPERLLHHVPQLSF*GNLSGTLQPATQQP Trigger: CGGTTGCTGAGTGGCTGGTTGGAGAGTCCCTGAGAGATTACCCAAGAAACTCAGTTGCGGCACGTGGTGGAGCAGCCTCTCAGGAGATTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413402.5 |
||
| CDS CAA 90 bp | CCATTTTCTGAGAGGCTGCTCCACCACGTGCCGCAACTGAGTTTCTaGGGTAATCTCTCAGGGACTCTCCAACCAGCCACTCAGCAACCG | + |
|
Preference number: 6 (lower is better) Translates to: PFSERLLHHVPQLSF*GNLSGTLQPATQQP Trigger: CGGTTGCTGAGTGGCTGGTTGGAGAGTCCCTGAGAGATTACCCAAGAAACTCAGTTGCGGCACGTGGTGGAGCAGCCTCTCAGAAAATGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000455894.1 |
||
| CDS CAA 90 bp | GAAATATCTGAGAGGCTGCTCCACCACGTGCCGCAACTGAGTTTCTaGGGTAATCTCTCAGGGACTCTCCAACCAGCCACTCAGCAACCG | + |
|
Preference number: 6 (lower is better) Translates to: EISERLLHHVPQLSF*GNLSGTLQPATQQP Trigger: CGGTTGCTGAGTGGCTGGTTGGAGAGTCCCTGAGAGATTACCCAAGAAACTCAGTTGCGGCACGTGGTGGAGCAGCCTCTCAGATATTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669309.1 |
||
| CDS TCA 72 bp | AATCTCCTGAGAGGCTGCTCCACCACGTGCCGCAACTaGGTTTCTTGGGTAATCTCTCAGGGACTCTCCAAC | + |
|
Preference number: 6 (lower is better) Translates to: NLLRGCSTTCRN*VSWVISQGLSN Trigger: GTTGGAGAGTCCCTGAGAGATTACCCAAGAAACTCAGTTGCGGCACGTGGTGGAGCAGCCTCTCAGGAGATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413402.5 |
||
| CDS CAA 72 bp | TGGCCCAGTGATCCCTGCCACCTGGTATTCATGTCCTaGTGGAGCCCTGTTCCATGCTGTATATGGCTGACT | + |
|
Preference number: 6 (lower is better) Translates to: WPSDPCHLVFMS*WSPVPCCIWLT Trigger: AGTCAGCCATATACAGCATGGAACAGGGCTCCACAAGGACATGAATACCAGGTGGCAGGGATCACTGGGCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663355.1 |
||
| CDS TCA 72 bp | GAGTTGTATCTTTTACCTGAGAGCCACGTCTCCATGTaGGTTGCACCTGAGAGCCATGCTTGGCTCGCCATC | + |
|
Preference number: 6 (lower is better) Translates to: ELYLLPESHVSM*VAPESHAWLAI Trigger: GATGGCGAGCCAAGCATGGCTCTCAGGTGCAACTCACATGGAGACGTGGCTCTCAGGTAAAAGATACAACTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000413402.5 |
||
| CDS TCA 72 bp | CATTTTCTGAGAGGCTGCTCCACCACGTGCCGCAACTaGGTTTCTTGGGTAATCTCTCAGGGACTCTCCAAC | + |
|
Preference number: 6 (lower is better) Translates to: HFLRGCSTTCRN*VSWVISQGLSN Trigger: GTTGGAGAGTCCCTGAGAGATTACCCAAGAAACTCAGTTGCGGCACGTGGTGGAGCAGCCTCTCAGAAAATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000455894.1 |
||
| CDS TCA 72 bp | AAATATCTGAGAGGCTGCTCCACCACGTGCCGCAACTaGGTTTCTTGGGTAATCTCTCAGGGACTCTCCAAC | + |
|
Preference number: 6 (lower is better) Translates to: KYLRGCSTTCRN*VSWVISQGLSN Trigger: GTTGGAGAGTCCCTGAGAGATTACCCAAGAAACTCAGTTGCGGCACGTGGTGGAGCAGCCTCTCAGATATTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669309.1 |
||
| CDS TCA 72 bp | ATCCATAGGCTCAAAGTAGAGGGATGGAGAAATATCTaGGAGGCTGCTCCACCACGTGCCGCAACTGAGTTT | + |
|
Preference number: 6 (lower is better) Translates to: IHRLKVEGWRNI*EAAPPRAATEF Trigger: AAACTCAGTTGCGGCACGTGGTGGAGCAGCCTCTCAGATATTTCTCCATCCCTCTACTTTGAGCCTATGGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669309.1 |
||
| CDS CAA 90 bp | GGTACCAAGCTGAAGACAAGCAGCAGGACCTTCGTCGAAAGTGTTTaGTTTCCCTCAAATCTCTGTTGTTCAGATTCCTCGTCACAGCGT | + |
|
Preference number: 6 (lower is better) Translates to: GTKLKTSSRTFVESV*FPSNLCCSDSSSQR Trigger: ACGCTGTGACGAGGAATCTGAACAACAGAGATTTGAGGGAAACAAAACACTTTCGACGAAGGTCCTGCTGCTTGTCTTCAGCTTGGTACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 10 transcripts: ENST00000413402.5 ENST00000455894.1 ENST00000654911.1 ENST00000656826.1 ENST00000656845.1 ENST00000658247.1 ENST00000662792.1 ENST00000663355.1 ENST00000666620.1 ENST00000669309.1 |
||
| CDS TCA 72 bp | GGTTATTGTAGTCACTGTAGATCCTGTGCTTCCCCGTaGTGTCCTGAGAACTCTGACACTCCTGAAGAAACA | + |
|
Preference number: 6 (lower is better) Translates to: GYCSHCRSCASP*CPENSDTPEET Trigger: TGTTTCTTCAGGAGTGTCAGAGTTCTCAGGACATCACGGGGAAGCACAGGATCTACAGTGACTACAATAACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000656826.1 ENST00000656845.1 |
||
| CDS CCA 72 bp | ACAGGTTGCAAATGTTTCATTCGTGATTTAGAGAGATaGCCCAGTGATCCCTGCCACCTGGTATTCATGTCC | + |
|
Preference number: 6 (lower is better) Translates to: TGCKCFIRDLER*PSDPCHLVFMS Trigger: GGACATGAATACCAGGTGGCAGGGATCACTGGGCCATCTCTCTAAATCACGAATGAAACATTTGCAACCTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000654911.1 ENST00000656845.1 ENST00000658247.1 ENST00000662792.1 ENST00000663355.1 ENST00000669309.1 |
||
| CDS CAA 90 bp | AGAACAGATGACATGTTCAGCTCAGCTTCAACTACTTCTTACCAGTaGGAAGACACCAAGGTTTCCTCTGCTCCTCCATCCTCTCCTTTT | + |
|
Preference number: 6 (lower is better) Translates to: RTDDMFSSASTTSYQ*EDTKVSSAPPSSPF Trigger: AAAAGGAGAGGATGGAGGAGCAGAGGAAACCTTGGTGTCTTCCAACTGGTAAGAAGTAGTTGAAGCTGAGCTGAACATGTCATCTGTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658247.1 |
||
| CDS CAA 90 bp | TACAAAGCATTTTCTCATTCAGTGTGCCAGGTACTGTGCTACATGTaGGAGGCACCTACAGGCCCCAATCTCACAGAGCTTACAATATAC | + |
|
Preference number: 6 (lower is better) Translates to: YKAFSHSVCQVLCYM*EAPTGPNLTELTIY Trigger: GTATATTGTAAGCTCTGTGAGATTGGGGCCTGTAGGTGCCTCCAACATGTAGCACAGTACCTGGCACACTGAATGAGAAAATGCTTTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000669309.1 |
||
| CDS TCA 72 bp | TGTCCTGAGAACTCTGACACTCCTGAAGAAACAGGCTaGGGGTGCTTTCTTGGTCATGTGCCATATTACAAT | + |
|
Preference number: 6 (lower is better) Translates to: CPENSDTPEETG*GCFLGHVPYYN Trigger: ATTGTAATATGGCACATGACCAAGAAAGCACCCTCAGCCTGTTTCTTCAGGAGTGTCAGAGTTCTCAGGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000656826.1 ENST00000656845.1 |
||
| CDS CAA 72 bp | CTGAAGACAAGCAGCAGGACCTTCGTCGAAAGTGTTTaGTTTCCCTCAAATCTCTGTTGTTCAGATTCCTCG | + |
|
Preference number: 6 (lower is better) Translates to: LKTSSRTFVESV*FPSNLCCSDSS Trigger: CGAGGAATCTGAACAACAGAGATTTGAGGGAAACAAAACACTTTCGACGAAGGTCCTGCTGCTTGTCTTCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 10 transcripts: ENST00000413402.5 ENST00000455894.1 ENST00000654911.1 ENST00000656826.1 ENST00000656845.1 ENST00000658247.1 ENST00000662792.1 ENST00000663355.1 ENST00000666620.1 ENST00000669309.1 |
||
| CDS CCA 72 bp | GCAACCAGCATCTCTGACGTCTTCACATCTCTGAAGTaGGTGCATGTTAAAGCAATGAACTTTTGCAAAGCA | + |
|
Preference number: 6 (lower is better) Translates to: ATSISDVFTSLK*VHVKAMNFCKA Trigger: TGCTTTGCAAAAGTTCATTGCTTTAACATGCACCCACTTCAGAGATGTGAAGACGTCAGAGATGCTGGTTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000666620.1 ENST00000669309.1 |
||
| CDS TCA 72 bp | GTCGTTTGCTTAATTGTACAGGTCATTGGGAAATGGTaGGGAGGCAGTCTTGTAGTACTCTTTTCAAGTTCC | + |
|
Preference number: 6 (lower is better) Translates to: VVCLIVQVIGKW*GGSLVVLFSSS Trigger: GGAACTTGAAAAGAGTACTACAAGACTGCCTCCTCACCATTTCCCAATGACCTGTACAATTAAGCAAACGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000654911.1 ENST00000662792.1 |
||
| CDS CAA 72 bp | CCAGGCCAACACACAAGCAATCAAAGAATATGTCGTTaGCTTAATTGTACAGGTCATTGGGAAATGGTGAGG | + |
|
Preference number: 6 (lower is better) Translates to: PGQHTSNQRICR*LNCTGHWEMVR Trigger: CCTCACCATTTCCCAATGACCTGTACAATTAAGCAAACGACATATTCTTTGATTGCTTGTGTGTTGGCCTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654911.1 ENST00000662792.1 |
||
| CDS CAA 90 bp | TTTAGTGTTCCAGGCCAACACACAAGCAATCAAAGAATATGTCGTTaGCTTAATTGTACAGGTCATTGGGAAATGGTGAGGAGGCAGTCT | + |
|
Preference number: 6 (lower is better) Translates to: FSVPGQHTSNQRICR*LNCTGHWEMVRRQS Trigger: AGACTGCCTCCTCACCATTTCCCAATGACCTGTACAATTAAGCAAACGACATATTCTTTGATTGCTTGTGTGTTGGCCTGGAACACTAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654911.1 ENST00000662792.1 |
||
| CDS TCA 72 bp | GCTCTAAGGACCCCATTTAGTGCAGCACATGGAAATTaGGTCCATAGTGTTTCAGTCCTTTTGAAAGTTGTT | + |
|
Preference number: 6 (lower is better) Translates to: ALRTPFSAAHGN*VHSVSVLLKVV Trigger: AACAACTTTCAAAAGGACTGAAACACTATGGACTCAATTTCCATGTGCTGCACTAAATGGGGTCCTTAGAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000656845.1 ENST00000662792.1 |
||
| CDS CCA 72 bp | CAAAGAATATGTCGTTTGCTTAATTGTACAGGTCATTaGGAAATGGTGAGGAGGCAGTCTTGTAGTACTCTT | + |
|
Preference number: 6 (lower is better) Translates to: QRICRLLNCTGH*EMVRRQSCSTL Trigger: AAGAGTACTACAAGACTGCCTCCTCACCATTTCCCAATGACCTGTACAATTAAGCAAACGACATATTCTTTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654911.1 ENST00000662792.1 |
||
| CDS CAA 90 bp | AGGGAGAGCTATAAAGGTGGCCCCAGAGTTGCAAAACAATATGACTaGTTTAAGGAGTTGATATCAATTCAGTATGCTTTAGCAAAGACT | + |
|
Preference number: 6 (lower is better) Translates to: RESYKGGPRVAKQYD*FKELISIQYALAKT Trigger: AGTCTTTGCTAAAGCATACTGAATTGATATCAACTCCTTAAACAAGTCATATTGTTTTGCAACTCTGGGGCCACCTTTATAGCTCTCCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000669309.1 |
||
| CDS TCA 72 bp | GAATTGAAACATCTAACAACGCATACTAATGAACTATaGGATTTAGTGTTCCAGGCCAACACACAAGCAATC | + |
|
Preference number: 6 (lower is better) Translates to: ELKHLTTHTNEL*DLVFQANTQAI Trigger: GATTGCTTGTGTGTTGGCCTGGAACACTAAATCTCATAGTTCATTAGTATGCGTTGTTAGATGTTTCAATTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654911.1 ENST00000662792.1 |
||
| CDS TCA 72 bp | AGCAATGAACTTTTGCAAAGCAAGCCTCAAGAACACTaGTTTTTCCTTAAATGTAACAACATCCATAGGCTC | + |
|
Preference number: 6 (lower is better) Translates to: SNELLQSKPQEH*FFLKCNNIHRL Trigger: GAGCCTATGGATGTTGTTACATTTAAGGAAAAATCAGTGTTCTTGAGGCTTGCTTTGCAAAAGTTCATTGCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000666620.1 ENST00000669309.1 |
||
| CDS TCA 72 bp | TCTAGGAGCCAAGCAAAGCTCTTTAAAATAGTAACCTaGAGCCAAAATCTAAATGAAGAGTGGGATTTATAC | + |
|
Preference number: 6 (lower is better) Translates to: SRSQAKLFKIVT*SQNLNEEWDLY Trigger: GTATAAATCCCACTCTTCATTTAGATTTTGGCTTCAGGTTACTATTTTAAAGAGCTTTGCTTGGCTCCTAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000669309.1 |
||
| CDS GCA 72 bp | AAGAAAGGGACATGTTATGATAGAAGAAATACATGGTaGTGTATTTCTAGGAGCCAAGCAAAGCTCTTTAAA | + |
|
Preference number: 6 (lower is better) Translates to: KKGTCYDRRNTW*CISRSQAKLFK Trigger: TTTAAAGAGCTTTGCTTGGCTCCTAGAAATACAGCACCATGTATTTCTTCTATCATAACATGTCCCTTTCTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669309.1 |
||
| CDS CAA 72 bp | TATAAAGGTGGCCCCAGAGTTGCAAAACAATATGACTaGTTTAAGGAGTTGATATCAATTCAGTATGCTTTA | + |
|
Preference number: 6 (lower is better) Translates to: YKGGPRVAKQYD*FKELISIQYAL Trigger: TAAAGCATACTGAATTGATATCAACTCCTTAAACAAGTCATATTGTTTTGCAACTCTGGGGCCACCTTTATA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000669309.1 |
||