Pregenerated sensors for LINC00377 (Homo sapiens)
Ensembl gene IDs: ENSG00000229246Ensembl transcript IDs: ENST00000456588.1, ENST00000663284.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CTAGGGAGACAATCTCTGTCAGTCTCTTGCTGCTTTCCTCTTTTGTaGCCCAGGTTCTTCCCATGGGTGCTCCAACAGGTCCTTGCTTCA | + |
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Preference number: 5 (lower is better) Translates to: LGRQSLSVSCCFPLL*PRFFPWVLQQVLAS Trigger: TGAAGCAAGGACCTGTTGGAGCACCCATGGGAAGAACCTGGGGCACAAAAGAGGAAAGCAGCAAGAGACTGACAGAGATTGTCTCCCTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663284.1 |
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| CDS GCA 90 bp | TCGTGGTCCAGGTTTCTAGGGAGACAATCTCTGTCAGTCTCTTGCTaGTTTCCTCTTTTGTGCCCCAGGTTCTTCCCATGGGTGCTCCAA | + |
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Preference number: 5 (lower is better) Translates to: SWSRFLGRQSLSVSC*FPLLCPRFFPWVLQ Trigger: TTGGAGCACCCATGGGAAGAACCTGGGGCACAAAAGAGGAAAGCAGCAAGAGACTGACAGAGATTGTCTCCCTAGAAACCTGGACCACGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000663284.1 |
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| CDS CCA 90 bp | TCAGTCTCTTGCTGCTTTCCTCTTTTGTGCCCCAGGTTCTTCCCATaGGTGCTCCAACAGGTCCTTGCTTCATTCCCTCAGATTTCCATT | + |
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Preference number: 5 (lower is better) Translates to: SVSCCFPLLCPRFFP*VLQQVLASFPQISI Trigger: AATGGAAATCTGAGGGAATGAAGCAAGGACCTGTTGGAGCACCCATGGGAAGAACCTGGGGCACAAAAGAGGAAAGCAGCAAGAGACTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000663284.1 |
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| CDS GCA 90 bp | TCTCTTGCTGCTTTCCTCTTTTGTGCCCCAGGTTCTTCCCATGGGTaGTCCAACAGGTCCTTGCTTCATTCCCTCAGATTTCCATTTAAA | + |
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Preference number: 5 (lower is better) Translates to: SLAAFLFCAPGSSHG*SNRSLLHSLRFPFK Trigger: TTTAAATGGAAATCTGAGGGAATGAAGCAAGGACCTGTTGGAGCACCCATGGGAAGAACCTGGGGCACAAAAGAGGAAAGCAGCAAGAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000663284.1 |
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| CDS GCA 90 bp | CCAGAAACCAAACAGATGCCAGAATCACGCTTCCTGTACAGCCTGTaGCTAATTTTGACCTTGATGGCTTTTGATCCACTTGAACAGAGT | + |
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Preference number: 5 (lower is better) Translates to: PETKQMPESRFLYSL*LILTLMAFDPLEQS Trigger: ACTCTGTTCAAGTGGATCAAAAGCCATCAAGGTCAAAATTAGGCACAGGCTGTACAGGAAGCGTGATTCTGGCATCTGTTTGGTTTCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000456588.1 ENST00000663284.1 |
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| CDS GCA 90 bp | CACTTGAACAGAGTTCATTATTGCGCTACCTCGGCACATAGAAGATaGTATTGTTCCTTCCTCTTAGAGACCCATGATAAAGATTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: HLNRVHYCATSAHRR*YCSFLLETHDKDFS Trigger: GGAGAAATCTTTATCATGGGTCTCTAAGAGGAAGGAACAATAGCATCTTCTATGTGCCGAGGTAGCGCAATAATGAACTCTGTTCAAGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456588.1 ENST00000663284.1 |
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| CDS TCA 90 bp | GAACATTTGTCACATGAAACTGACTTCTTTAGTAGACAAAGGCTGTaGTGGCTGTACAATATTCCCCTTACTCTCTACTTCTACTTCCAA | + |
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Preference number: 5 (lower is better) Translates to: EHLSHETDFFSRQRL*WLYNIPLTLYFYFQ Trigger: TTGGAAGTAGAAGTAGAGAGTAAGGGGAATATTGTACAGCCATCACAGCCTTTGTCTACTAAAGAAGTCAGTTTCATGTGACAAATGTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000456588.1 ENST00000663284.1 |
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| CDS GCA 72 bp | GCTTTCCTCTTTTGTGCCCCAGGTTCTTCCCATGGGTaGTCCAACAGGTCCTTGCTTCATTCCCTCAGATTT | + |
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Preference number: 6 (lower is better) Translates to: AFLFCAPGSSHG*SNRSLLHSLRF Trigger: AAATCTGAGGGAATGAAGCAAGGACCTGTTGGAGCACCCATGGGAAGAACCTGGGGCACAAAAGAGGAAAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000663284.1 |
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| CDS GCA 72 bp | CCCCAGGTTCTTCCCATGGGTGCTCCAACAGGTCCTTaGTTCATTCCCTCAGATTTCCATTTAAATCATGGG | + |
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Preference number: 6 (lower is better) Translates to: PQVLPMGAPTGP*FIPSDFHLNHG Trigger: CCCATGATTTAAATGGAAATCTGAGGGAATGAAGCAAGGACCTGTTGGAGCACCCATGGGAAGAACCTGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663284.1 |
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| CDS GCA 72 bp | AGGTTTCTAGGGAGACAATCTCTGTCAGTCTCTTGCTaGTTTCCTCTTTTGTGCCCCAGGTTCTTCCCATGG | + |
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Preference number: 6 (lower is better) Translates to: RFLGRQSLSVSC*FPLLCPRFFPW Trigger: CCATGGGAAGAACCTGGGGCACAAAAGAGGAAAGCAGCAAGAGACTGACAGAGATTGTCTCCCTAGAAACCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000663284.1 |
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| CDS CAA 72 bp | GCCCCAGGTTCTTCCCATGGGTGCTCCAACAGGTCCTaGCTTCATTCCCTCAGATTTCCATTTAAATCATGG | + |
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Preference number: 6 (lower is better) Translates to: APGSSHGCSNRS*LHSLRFPFKSW Trigger: CCATGATTTAAATGGAAATCTGAGGGAATGAAGCAAGGACCTGTTGGAGCACCCATGGGAAGAACCTGGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663284.1 |
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| CDS CAA 90 bp | CTCTTTTGTGCCCCAGGTTCTTCCCATGGGTGCTCCAACAGGTCCTaGCTTCATTCCCTCAGATTTCCATTTAAATCATGGGCATTCACC | + |
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Preference number: 6 (lower is better) Translates to: LFCAPGSSHGCSNRS*LHSLRFPFKSWAFT Trigger: GGTGAATGCCCATGATTTAAATGGAAATCTGAGGGAATGAAGCAAGGACCTGTTGGAGCACCCATGGGAAGAACCTGGGGCACAAAAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000663284.1 |
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| CDS CAA 72 bp | CCAGAATCACGCTTCCTGTACAGCCTGTGCCTAATTTaGACCTTGATGGCTTTTGATCCACTTGAACAGAGT | + |
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Preference number: 6 (lower is better) Translates to: PESRFLYSLCLI*TLMAFDPLEQS Trigger: ACTCTGTTCAAGTGGATCAAAAGCCATCAAGGTCAAAATTAGGCACAGGCTGTACAGGAAGCGTGATTCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000456588.1 ENST00000663284.1 |
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| CDS CAA 90 bp | ATGCCAGAATCACGCTTCCTGTACAGCCTGTGCCTAATTTTGACCTaGATGGCTTTTGATCCACTTGAACAGAGTTCATTATTGCGCTAC | + |
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Preference number: 6 (lower is better) Translates to: MPESRFLYSLCLILT*MAFDPLEQSSLLRY Trigger: GTAGCGCAATAATGAACTCTGTTCAAGTGGATCAAAAGCCATCAAGGTCAAAATTAGGCACAGGCTGTACAGGAAGCGTGATTCTGGCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000456588.1 ENST00000663284.1 |
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| CDS GCA 72 bp | AAACAGATGCCAGAATCACGCTTCCTGTACAGCCTGTaGCTAATTTTGACCTTGATGGCTTTTGATCCACTT | + |
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Preference number: 6 (lower is better) Translates to: KQMPESRFLYSL*LILTLMAFDPL Trigger: AAGTGGATCAAAAGCCATCAAGGTCAAAATTAGGCACAGGCTGTACAGGAAGCGTGATTCTGGCATCTGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000456588.1 ENST00000663284.1 |
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| CDS CAA 72 bp | TCACGCTTCCTGTACAGCCTGTGCCTAATTTTGACCTaGATGGCTTTTGATCCACTTGAACAGAGTTCATTA | + |
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Preference number: 6 (lower is better) Translates to: SRFLYSLCLILT*MAFDPLEQSSL Trigger: TAATGAACTCTGTTCAAGTGGATCAAAAGCCATCAAGGTCAAAATTAGGCACAGGCTGTACAGGAAGCGTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000456588.1 ENST00000663284.1 |
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| CDS CAA 72 bp | GATTTCCATTTAAATCATGGGCATTCACCTGTAACTTaGATCTTTCTGAGGAGACCTGGCATCCAACATCCC | + |
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Preference number: 6 (lower is better) Translates to: DFHLNHGHSPVT*IFLRRPGIQHP Trigger: GGGATGTTGGATGCCAGGTCTCCTCAGAAAGATCAAAGTTACAGGTGAATGCCCATGATTTAAATGGAAATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663284.1 |
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| CDS CAA 90 bp | AAACAGATGCCAGAATCACGCTTCCTGTACAGCCTGTGCCTAATTTaGACCTTGATGGCTTTTGATCCACTTGAACAGAGTTCATTATTG | + |
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Preference number: 6 (lower is better) Translates to: KQMPESRFLYSLCLI*TLMAFDPLEQSSLL Trigger: CAATAATGAACTCTGTTCAAGTGGATCAAAAGCCATCAAGGTCAAAATTAGGCACAGGCTGTACAGGAAGCGTGATTCTGGCATCTGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000456588.1 ENST00000663284.1 |
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| CDS GCA 72 bp | AGAGTTCATTATTGCGCTACCTCGGCACATAGAAGATaGTATTGTTCCTTCCTCTTAGAGACCCATGATAAA | + |
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Preference number: 6 (lower is better) Translates to: RVHYCATSAHRR*YCSFLLETHDK Trigger: TTTATCATGGGTCTCTAAGAGGAAGGAACAATAGCATCTTCTATGTGCCGAGGTAGCGCAATAATGAACTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456588.1 ENST00000663284.1 |
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| CDS TCA 72 bp | TCACATGAAACTGACTTCTTTAGTAGACAAAGGCTGTaGTGGCTGTACAATATTCCCCTTACTCTCTACTTC | + |
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Preference number: 6 (lower is better) Translates to: SHETDFFSRQRL*WLYNIPLTLYF Trigger: GAAGTAGAGAGTAAGGGGAATATTGTACAGCCATCACAGCCTTTGTCTACTAAAGAAGTCAGTTTCATGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000456588.1 ENST00000663284.1 |
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