Pregenerated sensors for LINC00373 (Homo sapiens)

Ensembl gene IDs: ENSG00000231019

Ensembl transcript IDs: ENST00000430214.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GGGACTTCACAGTCGGGAGAAAGCTGTAACCCTCAGATCCACACGTaGAATCTCGGTATCTGCATGCCACACAATGTTTCCAGAGTCCTC	+
Preference number: 5 (lower is better) Translates to: GTSQSGESCNPQIHT*NLGICMPHNVSRVL Trigger: GAGGACTCTGGAAACATTGTGTGGCATGCAGATACCGAGATTGCACGTGTGGATCTGAGGGTTACAGCTTTCTCCCGACTGTGAAGTCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000430214.1
CDS TCA 90 bp	GATCATGTTCATACAGATACTTTAGTAAATAACGAGCCTTCGATGTaGCAAATACACAGGCTGCCAAAACCTACTCAGGTAACCTGTTTT	+
Preference number: 5 (lower is better) Translates to: DHVHTDTLVNNEPSM*QIHRLPKPTQVTCF Trigger: AAAACAGGTTACCTGAGTAGGTTTTGGCAGCCTGTGTATTTGTCACATCGAAGGCTCGTTATTTACTAAAGTATCTGTATGAACATGATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000430214.1
CDS GCA 72 bp	ACCCTCAGATCCACACGTGCAATCTCGGTATCTGCATaGCACACAATGTTTCCAGAGTCCTCCAGGCATGAG	+
Preference number: 6 (lower is better) Translates to: TLRSTRAISVSA*HTMFPESSRHE Trigger: CTCATGCCTGGAGGACTCTGGAAACATTGTGTGGCATGCAGATACCGAGATTGCACGTGTGGATCTGAGGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000430214.1
CDS GCA 72 bp	TGTAACCCTCAGATCCACACGTGCAATCTCGGTATCTaGATGCCACACAATGTTTCCAGAGTCCTCCAGGCA	+
Preference number: 6 (lower is better) Translates to: CNPQIHTCNLGI*MPHNVSRVLQA Trigger: TGCCTGGAGGACTCTGGAAACATTGTGTGGCATGCAGATACCGAGATTGCACGTGTGGATCTGAGGGTTACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000430214.1
CDS GCA 72 bp	CAGTCGGGAGAAAGCTGTAACCCTCAGATCCACACGTaGAATCTCGGTATCTGCATGCCACACAATGTTTCC	+
Preference number: 6 (lower is better) Translates to: QSGESCNPQIHT*NLGICMPHNVS Trigger: GGAAACATTGTGTGGCATGCAGATACCGAGATTGCACGTGTGGATCTGAGGGTTACAGCTTTCTCCCGACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000430214.1
CDS CAA 90 bp	GACCACTGTTATTTGGTAACACAAGACACTTATGCAAAAGGATTATaGCAAGGAAGAATAGGGACTTCACAGTCGGGAGAAAGCTGTAAC	+
Preference number: 6 (lower is better) Translates to: DHCYLVTQDTYAKGL*QGRIGTSQSGESCN Trigger: GTTACAGCTTTCTCCCGACTGTGAAGTCCCTATTCTTCCTTGCAATAATCCTTTTGCATAAGTGTCTTGTGTTACCAAATAACAGTGGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000430214.1
CDS TCA 72 bp	CATACAGATACTTTAGTAAATAACGAGCCTTCGATGTaGCAAATACACAGGCTGCCAAAACCTACTCAGGTA	+
Preference number: 6 (lower is better) Translates to: HTDTLVNNEPSM*QIHRLPKPTQV Trigger: TACCTGAGTAGGTTTTGGCAGCCTGTGTATTTGTCACATCGAAGGCTCGTTATTTACTAAAGTATCTGTATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000430214.1
CDS CAA 72 bp	TATTTGGTAACACAAGACACTTATGCAAAAGGATTATaGCAAGGAAGAATAGGGACTTCACAGTCGGGAGAA	+
Preference number: 6 (lower is better) Translates to: YLVTQDTYAKGL*QGRIGTSQSGE Trigger: TTCTCCCGACTGTGAAGTCCCTATTCTTCCTTGCAATAATCCTTTTGCATAAGTGTCTTGTGTTACCAAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000430214.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu