Pregenerated sensors for LINC00370 (Homo sapiens)

Ensembl gene IDs: ENSG00000223617

Ensembl transcript IDs: ENST00000455487.1, ENST00000648154.1

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	ATGACTAGAGGGAAGCTGTGGGAAACAGGCAGGCGAAGCCAGCAGTaGGACCGGCCGCGCTTCTCTGACTCTCGACCCAGGGTGGGTGGC	+
Preference number: 5 (lower is better) Translates to: MTRGKLWETGRRSQQ*DRPRFSDSRPRVGG Trigger: GCCACCCACCCTGGGTCGAGAGTCAGAGAAGCGCGGCCGGTCCCACTGCTGGCTTCGCCTGCCTGTTTCCCACAGCTTCCCTCTAGTCAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000455487.1
CDS CCA 90 bp	ACTTTAATGTTCGTTGGAAAACGAATAACAACCAAGACTTCACACTaGATACACAAGGAAACCTATTTATCAGTATCATTCAGTGTTGAG	+
Preference number: 5 (lower is better) Translates to: TLMFVGKRITTKTSH*IHKETYLSVSFSVE Trigger: CTCAACACTGAATGATACTGATAAATAGGTTTCCTTGTGTATCCAGTGTGAAGTCTTGGTTGTTATTCGTTTTCCAACGAACATTAAAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648154.1
CDS CAA 90 bp	GCTCTTTCTAACAATGGGGTGACCAGCGTGAGTGAAATAATACTGTaGAACCAGGCAAGGCTTAGGGGCCTGAGACTGATGCAGCCTCTC	+
Preference number: 6 (lower is better) Translates to: ALSNNGVTSVSEIIL*NQARLRGLRLMQPL Trigger: GAGAGGCTGCATCAGTCTCAGGCCCCTAAGCCTTGCCTGGTTCAACAGTATTATTTCACTCACGCTGGTCACCCCATTGTTAGAAAGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000455487.1 ENST00000648154.1
CDS CAA 72 bp	AACAATGGGGTGACCAGCGTGAGTGAAATAATACTGTaGAACCAGGCAAGGCTTAGGGGCCTGAGACTGATG	+
Preference number: 6 (lower is better) Translates to: NNGVTSVSEIIL*NQARLRGLRLM Trigger: CATCAGTCTCAGGCCCCTAAGCCTTGCCTGGTTCAACAGTATTATTTCACTCACGCTGGTCACCCCATTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000455487.1 ENST00000648154.1
CDS CAA 90 bp	GAGGACAGGGCCTTGCTTTCTGATTTCTCATTCTGTTCTCCAGAGTaGCTTCCTTTTACACTAGGCAGGTTTCTAGGGAACTGGGCAGCA	+
Preference number: 6 (lower is better) Translates to: EDRALLSDFSFCSPE*LPFTLGRFLGNWAA Trigger: TGCTGCCCAGTTCCCTAGAAACCTGCCTAGTGTAAAAGGAAGCAACTCTGGAGAACAGAATGAGAAATCAGAAAGCAAGGCCCTGTCCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000455487.1
CDS CAA 72 bp	AGGAGTTGTAGAATTCCCATTGGAAGGATCTCAGGTTaGGAGATAATGCTATTCCCGTCACTTATGATGGTA	+
Preference number: 6 (lower is better) Translates to: RSCRIPIGRISG*EIMLFPSLMMV Trigger: TACCATCATAAGTGACGGGAATAGCATTATCTCCAAACCTGAGATCCTTCCAATGGGAATTCTACAACTCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648154.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu