Pregenerated sensors for LINC00366 (Homo sapiens)
Ensembl gene IDs: ENSG00000229437Ensembl transcript IDs: ENST00000441430.1, ENST00000653597.1, ENST00000657759.1, ENST00000664797.1
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GTAGGAAATTCAGCTCCTATGCAGAAGTTGACTGTGCTGACACTCTaGTCTAGGAATTCCAGCCTCCAGAACTGCAGAACGTCACCCCCT | + |
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Preference number: 5 (lower is better) Translates to: VGNSAPMQKLTVLTL*SRNSSLQNCRTSPP Trigger: AGGGGGTGACGTTCTGCAGTTCTGGAGGCTGGAATTCCTAGACCAGAGTGTCAGCACAGTCAACTTCTGCATAGGAGCTGAATTTCCTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000441430.1 |
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| CDS GCA 90 bp | CTCAGCATTGGTATGTGGGGCTGCTTGAATTGCACTGAACTTGCCTaGAATCCATGCTCTGAATTCTCCATCTGCATCTCTGTGCCTCCT | + |
|
Preference number: 5 (lower is better) Translates to: LSIGMWGCLNCTELA*NPCSEFSICISVPP Trigger: AGGAGGCACAGAGATGCAGATGGAGAATTCAGAGCATGGATTGCAGGCAAGTTCAGTGCAATTCAAGCAGCCCCACATACCAATGCTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657759.1 |
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| CDS GCA 90 bp | TTGACTGTGCTGACACTCTGGTCTAGGAATTCCAGCCTCCAGAACTaGAGAACGTCACCCCCTGTTATTCATGCACCATCTCCACTTTAT | + |
|
Preference number: 5 (lower is better) Translates to: LTVLTLWSRNSSLQN*RTSPPVIHAPSPLY Trigger: ATAAAGTGGAGATGGTGCATGAATAACAGGGGGTGACGTTCTGCAGTTCTGGAGGCTGGAATTCCTAGACCAGAGTGTCAGCACAGTCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000441430.1 |
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| CDS TCA 90 bp | AGCAGCTTAGCTCTTCAAATCTCAGCATTGGTATGTGGGGCTGCTTaGATTGCACTGAACTTGCCTGCAATCCATGCTCTGAATTCTCCA | + |
|
Preference number: 5 (lower is better) Translates to: SSLALQISALVCGAA*IALNLPAIHALNSP Trigger: TGGAGAATTCAGAGCATGGATTGCAGGCAAGTTCAGTGCAATTCAAGCAGCCCCACATACCAATGCTGAGATTTGAAGAGCTAAGCTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000657759.1 ENST00000664797.1 |
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| CDS GCA 90 bp | CTTAGCTCTTCAAATCTCAGCATTGGTATGTGGGGCTGCTTGAATTaGACTGAACTTGCCTGCAATCCATGCTCTGAATTCTCCATCTGC | + |
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Preference number: 5 (lower is better) Translates to: LSSSNLSIGMWGCLN*TELACNPCSEFSIC Trigger: GCAGATGGAGAATTCAGAGCATGGATTGCAGGCAAGTTCAGTGCAATTCAAGCAGCCCCACATACCAATGCTGAGATTTGAAGAGCTAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000657759.1 ENST00000664797.1 |
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| CDS CCA 90 bp | TATCAAGTATCTGAACCCATTCAGGAGCAGCTGTGTCACACGTCATaGATCAGGTGTGAGTGCATTAGAGACACCATCCATGGCAGTTTA | + |
|
Preference number: 5 (lower is better) Translates to: YQVSEPIQEQLCHTS*IRCECIRDTIHGSL Trigger: TAAACTGCCATGGATGGTGTCTCTAATGCACTCACACCTGATCCATGACGTGTGACACAGCTGCTCCTGAATGGGTTCAGATACTTGATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657759.1 |
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| CDS GCA 72 bp | CTGACACTCTGGTCTAGGAATTCCAGCCTCCAGAACTaGAGAACGTCACCCCCTGTTATTCATGCACCATCT | + |
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Preference number: 6 (lower is better) Translates to: LTLWSRNSSLQN*RTSPPVIHAPS Trigger: AGATGGTGCATGAATAACAGGGGGTGACGTTCTGCAGTTCTGGAGGCTGGAATTCCTAGACCAGAGTGTCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000441430.1 |
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| CDS GCA 72 bp | GGCTGCTTGAATTGCACTGAACTTGCCTGCAATCCATaGTCTGAATTCTCCATCTGCATCTCTGTGCCTCCT | + |
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Preference number: 6 (lower is better) Translates to: GCLNCTELACNP*SEFSICISVPP Trigger: AGGAGGCACAGAGATGCAGATGGAGAATTCAGAGCATGGATTGCAGGCAAGTTCAGTGCAATTCAAGCAGCC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657759.1 |
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| CDS CCA 72 bp | TCTGAACCCATTCAGGAGCAGCTGTGTCACACGTCATaGATCAGGTGTGAGTGCATTAGAGACACCATCCAT | + |
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Preference number: 6 (lower is better) Translates to: SEPIQEQLCHTS*IRCECIRDTIH Trigger: ATGGATGGTGTCTCTAATGCACTCACACCTGATCCATGACGTGTGACACAGCTGCTCCTGAATGGGTTCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657759.1 |
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| CDS GCA 72 bp | GGTATGTGGGGCTGCTTGAATTGCACTGAACTTGCCTaGAATCCATGCTCTGAATTCTCCATCTGCATCTCT | + |
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Preference number: 6 (lower is better) Translates to: GMWGCLNCTELA*NPCSEFSICIS Trigger: AGAGATGCAGATGGAGAATTCAGAGCATGGATTGCAGGCAAGTTCAGTGCAATTCAAGCAGCCCCACATACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000657759.1 ENST00000664797.1 |
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| CDS CAA 90 bp | AAGAGTGGTAGTTCGAATGTAGGAAATTCAGCTCCTATGCAGAAGTaGACTGTGCTGACACTCTGGTCTAGGAATTCCAGCCTCCAGAAC | + |
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Preference number: 6 (lower is better) Translates to: KSGSSNVGNSAPMQK*TVLTLWSRNSSLQN Trigger: GTTCTGGAGGCTGGAATTCCTAGACCAGAGTGTCAGCACAGTCAACTTCTGCATAGGAGCTGAATTTCCTACATTCGAACTACCACTCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000441430.1 |
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| CDS GCA 72 bp | TTGAGCTTGAATTGCACTGAACTTGCCTGCAATCCATaGTCTGAATTCTCCATCTGCATCTCTGTGCCTCCT | + |
|
Preference number: 6 (lower is better) Translates to: LSLNCTELACNP*SEFSICISVPP Trigger: AGGAGGCACAGAGATGCAGATGGAGAATTCAGAGCATGGATTGCAGGCAAGTTCAGTGCAATTCAAGCTCAA 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653597.1 |
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| CDS CAA 90 bp | ACAGAACAGATGAGAGCTTTGGGCCCAGGCCTTAAGAATAAACGGTaGGTGTCTAGAGGAGAGAAGGAGCCGAGGAGATATATTTCAAAA | + |
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Preference number: 6 (lower is better) Translates to: TEQMRALGPGLKNKR*VSRGEKEPRRYISK Trigger: TTTTGAAATATATCTCCTCGGCTCCTTCTCTCCTCTAGACACCAACCGTTTATTCTTAAGGCCTGGGCCCAAAGCTCTCATCTGTTCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000441430.1 |
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| CDS GCA 72 bp | TCAAATCTCAGCATTGGTATGTGGGGCTGCTTGAATTaGACTGAACTTGCCTGCAATCCATGCTCTGAATTC | + |
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Preference number: 6 (lower is better) Translates to: SNLSIGMWGCLN*TELACNPCSEF Trigger: GAATTCAGAGCATGGATTGCAGGCAAGTTCAGTGCAATTCAAGCAGCCCCACATACCAATGCTGAGATTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000657759.1 ENST00000664797.1 |
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| CDS GCA 72 bp | CCTCCAGAACTGCAGAACGTCACCCCCTGTTATTCATaGACCATCTCCACTTTATTGGAAATGTTCTGTTTT | + |
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Preference number: 6 (lower is better) Translates to: PPELQNVTPCYS*TISTLLEMFCF Trigger: AAAACAGAACATTTCCAATAAAGTGGAGATGGTGCATGAATAACAGGGGGTGACGTTCTGCAGTTCTGGAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000441430.1 |
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