Pregenerated sensors for LINC00364 (Homo sapiens)
Ensembl gene IDs: ENSG00000230040Ensembl transcript IDs: ENST00000415120.1, ENST00000656527.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CATCCTTCTGCTGGTCTGCGGGCTTGCTGGTCTGCTTCTGGAGTCTaGGGTTCGGGATTCATATGGGTGCAGGATAGGGGGTGTGGCAGG | + |
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Preference number: 5 (lower is better) Translates to: HPSAGLRACWSASGV*GSGFIWVQDRGCGR Trigger: CCTGCCACACCCCCTATCCTGCACCCATATGAATCCCGAACCCCAGACTCCAGAAGCAGACCAGCAAGCCCGCAGACCAGCAGAAGGATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000415120.1 ENST00000656527.1 |
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| CDS CCA 90 bp | TCTGCCACATCGTTCTGCCATCCTTCTGCTGGTCTGCGGGCTTGCTaGTCTGCTTCTGGAGTCTGGGGTTCGGGATTCATATGGGTGCAG | + |
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Preference number: 5 (lower is better) Translates to: SATSFCHPSAGLRAC*SASGVWGSGFIWVQ Trigger: CTGCACCCATATGAATCCCGAACCCCAGACTCCAGAAGCAGACCAGCAAGCCCGCAGACCAGCAGAAGGATGGCAGAACGATGTGGCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000415120.1 ENST00000656527.1 |
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| CDS TCA 90 bp | ATTCTGGCTGCCCAGTGGCTGGACTCCTCTCTGACTGCCCCCAGCTaGACTCATTTTGGCATTCAGATGTTCCTCCTCTTCTCCCTTTCT | + |
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Preference number: 5 (lower is better) Translates to: ILAAQWLDSSLTAPS*THFGIQMFLLFSLS Trigger: AGAAAGGGAGAAGAGGAGGAACATCTGAATGCCAAAATGAGTTCAGCTGGGGGCAGTCAGAGAGGAGTCCAGCCACTGGGCAGCCAGAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000415120.1 ENST00000656527.1 |
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| CDS GCA 90 bp | AAACTGGAGTCTCAGATAGGGGTTTATCTTCTTTGCCTGCTGCAGTaGCTCTGCAAGCATTACTATCTTAGGACAAAGAGAATCCCTGAT | + |
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Preference number: 5 (lower is better) Translates to: KLESQIGVYLLCLLQ*LCKHYYLRTKRIPD Trigger: ATCAGGGATTCTCTTTGTCCTAAGATAGTAATGCTTGCAGAGGCACTGCAGCAGGCAAAGAAGATAAACCCCTATCTGAGACTCCAGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656527.1 |
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| CDS CCA 72 bp | GCTGGTCTGCGGGCTTGCTGGTCTGCTTCTGGAGTCTaGGGTTCGGGATTCATATGGGTGCAGGATAGGGGG | + |
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Preference number: 6 (lower is better) Translates to: AGLRACWSASGV*GSGFIWVQDRG Trigger: CCCCCTATCCTGCACCCATATGAATCCCGAACCCCAGACTCCAGAAGCAGACCAGCAAGCCCGCAGACCAGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000415120.1 ENST00000656527.1 |
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| CDS GCA 72 bp | ATGAAGTGGAAAGGTGATCCTCCCCTGGATTCTGGCTaGCCAGTGGCTGGACTCCTCTCTGACTGCCCCCAG | + |
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Preference number: 6 (lower is better) Translates to: MKWKGDPPLDSG*PVAGLLSDCPQ Trigger: CTGGGGGCAGTCAGAGAGGAGTCCAGCCACTGGGCAGCCAGAATCCAGGGGAGGATCACCTTTCCACTTCAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000415120.1 ENST00000656527.1 |
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| CDS GCA 72 bp | CTGCCATCCTTCTGCTGGTCTGCGGGCTTGCTGGTCTaGTTCTGGAGTCTGGGGTTCGGGATTCATATGGGT | + |
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Preference number: 6 (lower is better) Translates to: LPSFCWSAGLLV*FWSLGFGIHMG Trigger: ACCCATATGAATCCCGAACCCCAGACTCCAGAAGCAGACCAGCAAGCCCGCAGACCAGCAGAAGGATGGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000415120.1 ENST00000656527.1 |
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| CDS GCA 72 bp | ACATCGTTCTGCCATCCTTCTGCTGGTCTGCGGGCTTaGTGGTCTGCTTCTGGAGTCTGGGGTTCGGGATTC | + |
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Preference number: 6 (lower is better) Translates to: TSFCHPSAGLRA*WSASGVWGSGF Trigger: GAATCCCGAACCCCAGACTCCAGAAGCAGACCAGCAAGCCCGCAGACCAGCAGAAGGATGGCAGAACGATGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000415120.1 ENST00000656527.1 |
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| CDS CCA 72 bp | CCCTTTCTCTGCCACATCGTTCTGCCATCCTTCTGCTaGTCTGCGGGCTTGCTGGTCTGCTTCTGGAGTCTG | + |
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Preference number: 6 (lower is better) Translates to: PFLCHIVLPSFC*SAGLLVCFWSL Trigger: CAGACTCCAGAAGCAGACCAGCAAGCCCGCAGACCAGCAGAAGGATGGCAGAACGATGTGGCAGAGAAAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000415120.1 ENST00000656527.1 |
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| CDS CAA 72 bp | CACATCGTTCTGCCATCCTTCTGCTGGTCTGCGGGCTaGCTGGTCTGCTTCTGGAGTCTGGGGTTCGGGATT | + |
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Preference number: 6 (lower is better) Translates to: HIVLPSFCWSAG*LVCFWSLGFGI Trigger: AATCCCGAACCCCAGACTCCAGAAGCAGACCAGCAAGCCCGCAGACCAGCAGAAGGATGGCAGAACGATGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000415120.1 ENST00000656527.1 |
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| CDS GCA 72 bp | TCTCCCTTTCTCTGCCACATCGTTCTGCCATCCTTCTaGTGGTCTGCGGGCTTGCTGGTCTGCTTCTGGAGT | + |
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Preference number: 6 (lower is better) Translates to: SPFLCHIVLPSF*WSAGLLVCFWS Trigger: ACTCCAGAAGCAGACCAGCAAGCCCGCAGACCAGCAGAAGGATGGCAGAACGATGTGGCAGAGAAAGGGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000415120.1 ENST00000656527.1 |
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| CDS CCA 72 bp | TCGTTCTGCCATCCTTCTGCTGGTCTGCGGGCTTGCTaGTCTGCTTCTGGAGTCTGGGGTTCGGGATTCATA | + |
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Preference number: 6 (lower is better) Translates to: SFCHPSAGLRAC*SASGVWGSGFI Trigger: TATGAATCCCGAACCCCAGACTCCAGAAGCAGACCAGCAAGCCCGCAGACCAGCAGAAGGATGGCAGAACGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000415120.1 ENST00000656527.1 |
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| CDS TCA 72 bp | GCCCAGTGGCTGGACTCCTCTCTGACTGCCCCCAGCTaGACTCATTTTGGCATTCAGATGTTCCTCCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: AQWLDSSLTAPS*THFGIQMFLLF Trigger: GAAGAGGAGGAACATCTGAATGCCAAAATGAGTTCAGCTGGGGGCAGTCAGAGAGGAGTCCAGCCACTGGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000415120.1 ENST00000656527.1 |
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| CDS CAA 90 bp | CGTCCCACAGTAGGCCGTCTGCAAGCTGAAGAACAAGGAAGCCAGTaGGAGTTCCAAAACCTCCAAAGTCGTGAAGCCAACAGCGCAGTC | + |
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Preference number: 6 (lower is better) Translates to: RPTVGRLQAEEQGSQ*EFQNLQSREANSAV Trigger: GACTGCGCTGTTGGCTTCACGACTTTGGAGGTTTTGGAACTCCAACTGGCTTCCTTGTTCTTCAGCTTGCAGACGGCCTACTGTGGGACG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656527.1 |
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| CDS GCA 72 bp | GATTCTGGCTGCCCAGTGGCTGGACTCCTCTCTGACTaGCCCCAGCTGAACTCATTTTGGCATTCAGATGTT | + |
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Preference number: 6 (lower is better) Translates to: DSGCPVAGLLSD*PQLNSFWHSDV Trigger: AACATCTGAATGCCAAAATGAGTTCAGCTGGGGGCAGTCAGAGAGGAGTCCAGCCACTGGGCAGCCAGAATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000415120.1 ENST00000656527.1 |
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| CDS CAA 72 bp | TTAAGACAGCAGGTATCCAGGCTTGAGGGTGAGGCTTaGCCAGGGAACTGCCCTTTTCTACCCAGTATTTCC | + |
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Preference number: 6 (lower is better) Translates to: LRQQVSRLEGEA*PGNCPFLPSIS Trigger: GGAAATACTGGGTAGAAAAGGGCAGTTCCCTGGCAAAGCCTCACCCTCAAGCCTGGATACCTGCTGTCTTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000415120.1 ENST00000656527.1 |
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| CDS CAA 72 bp | GTAGGCCGTCTGCAAGCTGAAGAACAAGGAAGCCAGTaGGAGTTCCAAAACCTCCAAAGTCGTGAAGCCAAC | + |
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Preference number: 6 (lower is better) Translates to: VGRLQAEEQGSQ*EFQNLQSREAN Trigger: GTTGGCTTCACGACTTTGGAGGTTTTGGAACTCCAACTGGCTTCCTTGTTCTTCAGCTTGCAGACGGCCTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656527.1 |
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| CDS GCA 72 bp | ATAGGGGTTTATCTTCTTTGCCTGCTGCAGTGCCTCTaGAAGCATTACTATCTTAGGACAAAGAGAATCCCT | + |
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Preference number: 6 (lower is better) Translates to: IGVYLLCLLQCL*KHYYLRTKRIP Trigger: AGGGATTCTCTTTGTCCTAAGATAGTAATGCTTGCAGAGGCACTGCAGCAGGCAAAGAAGATAAACCCCTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656527.1 |
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| CDS GCA 72 bp | TCTCAGATAGGGGTTTATCTTCTTTGCCTGCTGCAGTaGCTCTGCAAGCATTACTATCTTAGGACAAAGAGA | + |
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Preference number: 6 (lower is better) Translates to: SQIGVYLLCLLQ*LCKHYYLRTKR Trigger: TCTCTTTGTCCTAAGATAGTAATGCTTGCAGAGGCACTGCAGCAGGCAAAGAAGATAAACCCCTATCTGAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656527.1 |
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| CDS CCA 72 bp | TATACTTCATTACGTCATAACAGAGGATCAATTTTGTaGCAAAAGAGGTGTGACAATGAGCTCCTAATCATA | + |
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Preference number: 6 (lower is better) Translates to: YTSLRHNRGSIL*QKRCDNELLII Trigger: TATGATTAGGAGCTCATTGTCACACCTCTTTTGCCACAAAATTGATCCTCTGTTATGACGTAATGAAGTATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000656527.1 |
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