Pregenerated sensors for LINC00363 (Homo sapiens)
Ensembl gene IDs: ENSG00000232849Ensembl transcript IDs: ENST00000660073.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGCATTTCTGAGCTTCAGTTTTGGCTTCTGTTTCCCAATAGGGGCTaGTACTGGAGGTATTACTCCAGGACTTCTGGCTTTACTTGCATA | + |
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Preference number: 5 (lower is better) Translates to: SISELQFWLLFPNRG*YWRYYSRTSGFTCI Trigger: TATGCAAGTAAAGCCAGAAGTCCTGGAGTAATACCTCCAGTAGCAGCCCCTATTGGGAAACAGAAGCCAAAACTGAAGCTCAGAAATGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000660073.1 |
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| CDS CCA 90 bp | GTATGGAGTATGCTTGAGGTGAGTAACTGTCAATCAGAACTTGTGTaGCACTGTCCATCAGCTGAGGCTAAAATCAGAGGAATTGGGAGA | + |
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Preference number: 5 (lower is better) Translates to: VWSMLEVSNCQSELV*HCPSAEAKIRGIGR Trigger: TCTCCCAATTCCTCTGATTTTAGCCTCAGCTGATGGACAGTGCCACACAAGTTCTGATTGACAGTTACTCACCTCAAGCATACTCCATAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660073.1 |
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| CDS TCA 90 bp | TTGCAGAATGTTCTTGGCAGAAAGATGTATGGAGTATGCTTGAGGTaGGTAACTGTCAATCAGAACTTGTGTGGCACTGTCCATCAGCTG | + |
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Preference number: 5 (lower is better) Translates to: LQNVLGRKMYGVCLR*VTVNQNLCGTVHQL Trigger: CAGCTGATGGACAGTGCCACACAAGTTCTGATTGACAGTTACTCACCTCAAGCATACTCCATACATCTTTCTGCCAAGAACATTCTGCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660073.1 |
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| CDS CAA 72 bp | GGCACTGTCCATCAGCTGAGGCTAAAATCAGAGGAATaGGGAGACATGACGCGTGGAGCTAAGGTCTCTCCC | + |
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Preference number: 6 (lower is better) Translates to: GTVHQLRLKSEE*GDMTRGAKVSP Trigger: GGGAGAGACCTTAGCTCCACGCGTCATGTCTCCCAATTCCTCTGATTTTAGCCTCAGCTGATGGACAGTGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660073.1 |
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| CDS GCA 72 bp | GAGCTTCAGTTTTGGCTTCTGTTTCCCAATAGGGGCTaGTACTGGAGGTATTACTCCAGGACTTCTGGCTTT | + |
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Preference number: 6 (lower is better) Translates to: ELQFWLLFPNRG*YWRYYSRTSGF Trigger: AAAGCCAGAAGTCCTGGAGTAATACCTCCAGTAGCAGCCCCTATTGGGAAACAGAAGCCAAAACTGAAGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000660073.1 |
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| CDS CCA 72 bp | CAGTTTTGGCTTCTGTTTCCCAATAGGGGCTGCTACTaGAGGTATTACTCCAGGACTTCTGGCTTTACTTGC | + |
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Preference number: 6 (lower is better) Translates to: QFWLLFPNRGCY*RYYSRTSGFTC Trigger: GCAAGTAAAGCCAGAAGTCCTGGAGTAATACCTCCAGTAGCAGCCCCTATTGGGAAACAGAAGCCAAAACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000660073.1 |
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| CDS CCA 72 bp | ATGCTTGAGGTGAGTAACTGTCAATCAGAACTTGTGTaGCACTGTCCATCAGCTGAGGCTAAAATCAGAGGA | + |
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Preference number: 6 (lower is better) Translates to: MLEVSNCQSELV*HCPSAEAKIRG Trigger: TCCTCTGATTTTAGCCTCAGCTGATGGACAGTGCCACACAAGTTCTGATTGACAGTTACTCACCTCAAGCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660073.1 |
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| CDS TCA 72 bp | GTTCTTGGCAGAAAGATGTATGGAGTATGCTTGAGGTaGGTAACTGTCAATCAGAACTTGTGTGGCACTGTC | + |
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Preference number: 6 (lower is better) Translates to: VLGRKMYGVCLR*VTVNQNLCGTV Trigger: GACAGTGCCACACAAGTTCTGATTGACAGTTACTCACCTCAAGCATACTCCATACATCTTTCTGCCAAGAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660073.1 |
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| CDS CCA 72 bp | AGGGCACATGGACTTCATAATGTTGCAGAATGTTCTTaGCAGAAAGATGTATGGAGTATGCTTGAGGTGAGT | + |
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Preference number: 6 (lower is better) Translates to: RAHGLHNVAECS*QKDVWSMLEVS Trigger: ACTCACCTCAAGCATACTCCATACATCTTTCTGCCAAGAACATTCTGCAACATTATGAAGTCCATGTGCCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660073.1 |
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| CDS CCA 72 bp | CATAATGTTGCAGAATGTTCTTGGCAGAAAGATGTATaGAGTATGCTTGAGGTGAGTAACTGTCAATCAGAA | + |
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Preference number: 6 (lower is better) Translates to: HNVAECSWQKDV*SMLEVSNCQSE Trigger: TTCTGATTGACAGTTACTCACCTCAAGCATACTCCATACATCTTTCTGCCAAGAACATTCTGCAACATTATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660073.1 |
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