Pregenerated sensors for LINC00355 (Homo sapiens)
Ensembl gene IDs: ENSG00000227674Ensembl transcript IDs: ENST00000456627.1, ENST00000650541.1, ENST00000654282.1, ENST00000669788.1
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CTGCTCGCTCTGATCCCCAAGCACAGGGATGCCTGGCTCCAGGGCTaGGGCTCGGTGGCCACAACAGCAGCCAGGGAACAGGAGGCTCCC | + |
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Preference number: 5 (lower is better) Translates to: LLALIPKHRDAWLQG*GSVATTAAREQEAP Trigger: GGGAGCCTCCTGTTCCCTGGCTGCTGTTGTGGCCACCGAGCCGCAGCCCTGGAGCCAGGCATCCCTGTGCTTGGGGATCAGAGCGAGCAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000654282.1 ENST00000669788.1 |
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| CDS GCA 90 bp | GGGAGAGGATCTGCTCCTGCTCGCTCTGATCCCCAAGCACAGGGATaGCTGGCTCCAGGGCTGCGGCTCGGTGGCCACAACAGCAGCCAG | + |
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Preference number: 5 (lower is better) Translates to: GRGSAPARSDPQAQG*LAPGLRLGGHNSSQ Trigger: CTGGCTGCTGTTGTGGCCACCGAGCCGCAGCCCTGGAGCCAGGCATCCCTGTGCTTGGGGATCAGAGCGAGCAGGAGCAGATCCTCTCCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000654282.1 ENST00000669788.1 |
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| CDS CCA 90 bp | CCCAGCTCCCAAGAGCACAGAGACTTCCGGGACCACAGCCATGGCTaGGCAGCTGCAGCTGCACCCAGAAGGGAGAGGATCTGCTCCTGC | + |
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Preference number: 5 (lower is better) Translates to: PSSQEHRDFRDHSHG*AAAAAPRRERICSC Trigger: GCAGGAGCAGATCCTCTCCCTTCTGGGTGCAGCTGCAGCTGCCCAGCCATGGCTGTGGTCCCGGAAGTCTCTGTGCTCTTGGGAGCTGGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000654282.1 ENST00000669788.1 |
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| CDS GCA 90 bp | CCAAGAGCACAGAGACTTCCGGGACCACAGCCATGGCTGGGCAGCTaGAGCTGCACCCAGAAGGGAGAGGATCTGCTCCTGCTCGCTCTG | + |
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Preference number: 5 (lower is better) Translates to: PRAQRLPGPQPWLGS*SCTQKGEDLLLLAL Trigger: CAGAGCGAGCAGGAGCAGATCCTCTCCCTTCTGGGTGCAGCTGCAGCTGCCCAGCCATGGCTGTGGTCCCGGAAGTCTCTGTGCTCTTGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000654282.1 ENST00000669788.1 |
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| CDS GCA 90 bp | GAGGCCACAAGCAGCTTCCACGACTGGCACCGGGGAAAGCCGAGGTaGCCAGAAGCTTGGAGACGCCAGGAACCACAGAGCCCCAGAAAG | + |
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Preference number: 5 (lower is better) Translates to: EATSSFHDWHRGKPR*PEAWRRQEPQSPRK Trigger: CTTTCTGGGGCTCTGTGGTTCCTGGCGTCTCCAAGCTTCTGGGCACCTCGGCTTTCCCCGGTGCCAGTCGTGGAAGCTGCTTGTGGCCTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000669788.1 |
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| CDS GCA 90 bp | GCTCGGTGGCCACAACAGCAGCCAGGGAACAGGAGGCTCCCGTCCTaGCAACTCACAAGGAGGCAGGGTTTTCACCTATTCCCAGCTCCC | + |
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Preference number: 5 (lower is better) Translates to: ARWPQQQPGNRRLPS*QLTRRQGFHLFPAP Trigger: GGGAGCTGGGAATAGGTGAAAACCCTGCCTCCTTGTGAGTTGGCAGGACGGGAGCCTCCTGTTCCCTGGCTGCTGTTGTGGCCACCGAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000654282.1 ENST00000669788.1 |
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| CDS CCA 90 bp | AGCTTCCACGACTGGCACCGGGGAAAGCCGAGGTGCCCAGAAGCTTaGAGACGCCAGGAACCACAGAGCCCCAGAAAGGGTGTCACAGTC | + |
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Preference number: 5 (lower is better) Translates to: SFHDWHRGKPRCPEA*RRQEPQSPRKGVTV Trigger: GACTGTGACACCCTTTCTGGGGCTCTGTGGTTCCTGGCGTCTCCAAGCTTCTGGGCACCTCGGCTTTCCCCGGTGCCAGTCGTGGAAGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000654282.1 ENST00000669788.1 |
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| CDS CCA 90 bp | GAGTTTCCCAAACAGCAAATGGAGGCCACAAGCAGCTTCCACGACTaGCACCGGGGAAAGCCGAGGTGCCCAGAAGCTTGGAGACGCCAG | + |
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Preference number: 5 (lower is better) Translates to: EFPKQQMEATSSFHD*HRGKPRCPEAWRRQ Trigger: CTGGCGTCTCCAAGCTTCTGGGCACCTCGGCTTTCCCCGGTGCCAGTCGTGGAAGCTGCTTGTGGCCTCCATTTGCTGTTTGGGAAACTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000669788.1 |
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| CDS CCA 90 bp | GGAGACGCCAGGAACCACAGAGCCCCAGAAAGGGTGTCACAGTCTTaGCTCTCCGATCTCCTAAGTCTGGGTTTGCCGAAGGGTCGCAGA | + |
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Preference number: 5 (lower is better) Translates to: GDARNHRAPERVSQS*LSDLLSLGLPKGRR Trigger: TCTGCGACCCTTCGGCAAACCCAGACTTAGGAGATCGGAGAGCCAAGACTGTGACACCCTTTCTGGGGCTCTGTGGTTCCTGGCGTCTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000654282.1 ENST00000669788.1 |
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| CDS CCA 90 bp | CTGCCAGCTAACATTCATAGCGTAGAGAGTTTCCCAAACAGCAAATaGAGGCCACAAGCAGCTTCCACGACTGGCACCGGGGAAAGCCGA | + |
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Preference number: 5 (lower is better) Translates to: LPANIHSVESFPNSK*RPQAASTTGTGESR Trigger: TCGGCTTTCCCCGGTGCCAGTCGTGGAAGCTGCTTGTGGCCTCCATTTGCTGTTTGGGAAACTCTCTACGCTATGAATGTTAGCTGGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000669788.1 |
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| CDS CCA 90 bp | AACTGTCTGCAATGCTTGGGTCCTGTGCTTGCTTCCTGTTGGAAGTaGAGGGTGGAAAAGCAGGCACCAACACTGTGTGCCCCTGTAGTG | + |
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Preference number: 5 (lower is better) Translates to: NCLQCLGPVLASCWK*RVEKQAPTLCAPVV Trigger: CACTACAGGGGCACACAGTGTTGGTGCCTGCTTTTCCACCCTCCACTTCCAACAGGAAGCAAGCACAGGACCCAAGCATTGCAGACAGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000669788.1 |
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| CDS GCA 90 bp | TTCCTGTTGGAAGTGGAGGGTGGAAAAGCAGGCACCAACACTGTGTaGCCCTGTAGTGGGAGGCAGTGTTTGCTGCCAGCTAACATTCAT | + |
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Preference number: 5 (lower is better) Translates to: FLLEVEGGKAGTNTV*PCSGRQCLLPANIH Trigger: ATGAATGTTAGCTGGCAGCAAACACTGCCTCCCACTACAGGGGCACACAGTGTTGGTGCCTGCTTTTCCACCCTCCACTTCCAACAGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000669788.1 |
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| CDS GCA 90 bp | ACTCTGTCAGTGGCTCCGAATGCACATTGGCGTGATACAACTGTCTaGAATGCTTGGGTCCTGTGCTTGCTTCCTGTTGGAAGTGGAGGG | + |
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Preference number: 5 (lower is better) Translates to: TLSVAPNAHWRDTTV*NAWVLCLLPVGSGG Trigger: CCCTCCACTTCCAACAGGAAGCAAGCACAGGACCCAAGCATTGCAGACAGTTGTATCACGCCAATGTGCATTCGGAGCCACTGACAGAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000669788.1 |
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| CDS CCA 90 bp | GTGGCTCCGAATGCACATTGGCGTGATACAACTGTCTGCAATGCTTaGGTCCTGTGCTTGCTTCCTGTTGGAAGTGGAGGGTGGAAAAGC | + |
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Preference number: 5 (lower is better) Translates to: VAPNAHWRDTTVCNA*VLCLLPVGSGGWKS Trigger: GCTTTTCCACCCTCCACTTCCAACAGGAAGCAAGCACAGGACCCAAGCATTGCAGACAGTTGTATCACGCCAATGTGCATTCGGAGCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000669788.1 |
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| CDS GCA 90 bp | CACATTGGCGTGATACAACTGTCTGCAATGCTTGGGTCCTGTGCTTaGTTCCTGTTGGAAGTGGAGGGTGGAAAAGCAGGCACCAACACT | + |
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Preference number: 5 (lower is better) Translates to: HIGVIQLSAMLGSCA*FLLEVEGGKAGTNT Trigger: AGTGTTGGTGCCTGCTTTTCCACCCTCCACTTCCAACAGGAAGCAAGCACAGGACCCAAGCATTGCAGACAGTTGTATCACGCCAATGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000669788.1 |
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| CDS TCA 90 bp | GTGACAAAGCAAGACTCTGTCAGTGGCTCCGAATGCACATTGGCGTaGTACAACTGTCTGCAATGCTTGGGTCCTGTGCTTGCTTCCTGT | + |
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Preference number: 5 (lower is better) Translates to: VTKQDSVSGSECTLA*YNCLQCLGPVLASC Trigger: ACAGGAAGCAAGCACAGGACCCAAGCATTGCAGACAGTTGTATCACGCCAATGTGCATTCGGAGCCACTGACAGAGTCTTGCTTTGTCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000669788.1 |
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| CDS GCA 90 bp | AATGCACATTGGCGTGATACAACTGTCTGCAATGCTTGGGTCCTGTaGTTGCTTCCTGTTGGAAGTGGAGGGTGGAAAAGCAGGCACCAA | + |
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Preference number: 5 (lower is better) Translates to: NAHWRDTTVCNAWVL*LLPVGSGGWKSRHQ Trigger: TTGGTGCCTGCTTTTCCACCCTCCACTTCCAACAGGAAGCAAGCACAGGACCCAAGCATTGCAGACAGTTGTATCACGCCAATGTGCATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000669788.1 |
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| CDS CCA 90 bp | TTCCATTCCTTATTCTGCTCCTTCTTCAGTGGGCTCTACCTCTTCTaGCAGGCAGGAAGAGGGAAGGATGGCAACTCATGGACCGTTCTT | + |
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Preference number: 5 (lower is better) Translates to: FHSLFCSFFSGLYLF*QAGRGKDGNSWTVL Trigger: AAGAACGGTCCATGAGTTGCCATCCTTCCCTCTTCCTGCCTGCCAGAAGAGGTAGAGCCCACTGAAGAAGGAGCAGAATAAGGAATGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456627.1 |
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| CDS GCA 90 bp | CAGGAAGAGGGAAGGATGGCAACTCATGGACCGTTCTTCCTCAACTaGTTATATCCTATTCCTCCTCATACAAGCCAGAGCAGAGTGAGT | + |
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Preference number: 5 (lower is better) Translates to: QEEGRMATHGPFFLN*LYPIPPHTSQSRVS Trigger: ACTCACTCTGCTCTGGCTTGTATGAGGAGGAATAGGATATAAGCAGTTGAGGAAGAACGGTCCATGAGTTGCCATCCTTCCCTCTTCCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456627.1 |
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| CDS GCA 90 bp | CCTAGTCAAAGCTGTGTCCATCCCTCCTCTGATCAGACTTCTGGATaGCATCAAGGAGGTCTGCATAACCTAAGATTATTGTTCTTGATC | + |
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Preference number: 5 (lower is better) Translates to: PSQSCVHPSSDQTSG*HQGGLHNLRLLFLI Trigger: GATCAAGAACAATAATCTTAGGTTATGCAGACCTCCTTGATGGCATCCAGAAGTCTGATCAGAGGAGGGATGGACACAGCTTTGACTAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650541.1 |
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| CDS CCA 90 bp | ATTTCTCCACATCCTCTCCAGCACTTTTCCGGAAGGTTGAGTGGTTaGGTTCATTGTCCAACCCTGTCACTTATTAGTCTAACACTTTGG | + |
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Preference number: 5 (lower is better) Translates to: ISPHPLQHFSGRLSG*VHCPTLSLISLTLW Trigger: CCAAAGTGTTAGACTAATAAGTGACAGGGTTGGACAATGAACCCAACCACTCAACCTTCCGGAAAAGTGCTGGAGAGGATGTGGAGAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000456627.1 |
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| CDS TCA 90 bp | GTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTACATCTCTaGGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTAC | + |
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Preference number: 5 (lower is better) Translates to: VMGWLGQMVFLVLHL*GIATLTSTMVELVY Trigger: GTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGAGATGTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456627.1 |
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| CDS TCA 90 bp | AGTTCTACATCTCTGAGGAATCGCCACACTGACTTCCACAATGGTTaGACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATT | + |
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Preference number: 5 (lower is better) Translates to: SSTSLRNRHTDFHNG*TSLQSHQQCKSVPI Trigger: AATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGAGATGTAGAACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000456627.1 |
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| CDS TCA 90 bp | TCAACTGCTTATATCCTATTCCTCCTCATACAAGCCAGAGCAGAGTaGGTTCTATTTTCCTCAGGAAAGGAATTGCTTCACCTAGCTTCA | + |
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Preference number: 5 (lower is better) Translates to: STAYILFLLIQARAE*VLFSSGKELLHLAS Trigger: TGAAGCTAGGTGAAGCAATTCCTTTCCTGAGGAAAATAGAACTCACTCTGCTCTGGCTTGTATGAGGAGGAATAGGATATAAGCAGTTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000456627.1 |
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| CDS GCA 90 bp | AGTGAAATTGTTACAAAACCCCCAAATTTAAGTTTGAGTACCCAATaGACAATAAGCCAAACACTGATACATCAGCGCTTAGGAAGAGAG | + |
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Preference number: 5 (lower is better) Translates to: SEIVTKPPNLSLSTQ*TISQTLIHQRLGRE Trigger: CTCTCTTCCTAAGCGCTGATGTATCAGTGTTTGGCTTATTGTGCATTGGGTACTCAAACTTAAATTTGGGGGTTTTGTAACAATTTCACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000650541.1 |
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| CDS CCA 90 bp | ATTCGAGTTTCATATTATAATAACTTTTCCGGAAGGTTGAGTGGTTaGGTTCATTGTCCAACCCTGTCACTTATTAGTCTAACACTTTGG | + |
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Preference number: 5 (lower is better) Translates to: IRVSYYNNFSGRLSG*VHCPTLSLISLTLW Trigger: CCAAAGTGTTAGACTAATAAGTGACAGGGTTGGACAATGAACCCAACCACTCAACCTTCCGGAAAAGTTATTATAATATGAAACTCGAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650541.1 |
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| CDS GCA 72 bp | CTGATCCCCAAGCACAGGGATGCCTGGCTCCAGGGCTaGGGCTCGGTGGCCACAACAGCAGCCAGGGAACAG | + |
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Preference number: 6 (lower is better) Translates to: LIPKHRDAWLQG*GSVATTAAREQ Trigger: CTGTTCCCTGGCTGCTGTTGTGGCCACCGAGCCGCAGCCCTGGAGCCAGGCATCCCTGTGCTTGGGGATCAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000654282.1 ENST00000669788.1 |
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| CDS CAA 72 bp | CGACTGGCACCGGGGAAAGCCGAGGTGCCCAGAAGCTaGGAGACGCCAGGAACCACAGAGCCCCAGAAAGGG | + |
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Preference number: 6 (lower is better) Translates to: RLAPGKAEVPRS*ETPGTTEPQKG Trigger: CCCTTTCTGGGGCTCTGTGGTTCCTGGCGTCTCCAAGCTTCTGGGCACCTCGGCTTTCCCCGGTGCCAGTCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000654282.1 ENST00000669788.1 |
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| CDS CCA 72 bp | GACTGGCACCGGGGAAAGCCGAGGTGCCCAGAAGCTTaGAGACGCCAGGAACCACAGAGCCCCAGAAAGGGT | + |
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Preference number: 6 (lower is better) Translates to: DWHRGKPRCPEA*RRQEPQSPRKG Trigger: ACCCTTTCTGGGGCTCTGTGGTTCCTGGCGTCTCCAAGCTTCTGGGCACCTCGGCTTTCCCCGGTGCCAGTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000654282.1 ENST00000669788.1 |
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| CDS CAA 90 bp | CAGCTTCCACGACTGGCACCGGGGAAAGCCGAGGTGCCCAGAAGCTaGGAGACGCCAGGAACCACAGAGCCCCAGAAAGGGTGTCACAGT | + |
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Preference number: 6 (lower is better) Translates to: QLPRLAPGKAEVPRS*ETPGTTEPQKGCHS Trigger: ACTGTGACACCCTTTCTGGGGCTCTGTGGTTCCTGGCGTCTCCAAGCTTCTGGGCACCTCGGCTTTCCCCGGTGCCAGTCGTGGAAGCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000654282.1 ENST00000669788.1 |
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| CDS CCA 72 bp | AAACAGCAAATGGAGGCCACAAGCAGCTTCCACGACTaGCACCGGGGAAAGCCGAGGTGCCCAGAAGCTTGG | + |
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Preference number: 6 (lower is better) Translates to: KQQMEATSSFHD*HRGKPRCPEAW Trigger: CCAAGCTTCTGGGCACCTCGGCTTTCCCCGGTGCCAGTCGTGGAAGCTGCTTGTGGCCTCCATTTGCTGTTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000669788.1 |
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| CDS CAA 90 bp | TGGAGACGCCAGGAACCACAGAGCCCCAGAAAGGGTGTCACAGTCTaGGCTCTCCGATCTCCTAAGTCTGGGTTTGCCGAAGGGTCGCAG | + |
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Preference number: 6 (lower is better) Translates to: WRRQEPQSPRKGVTV*ALRSPKSGFAEGSQ Trigger: CTGCGACCCTTCGGCAAACCCAGACTTAGGAGATCGGAGAGCCAAGACTGTGACACCCTTTCTGGGGCTCTGTGGTTCCTGGCGTCTCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000654282.1 ENST00000669788.1 |
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| CDS TCA 72 bp | AGTGAACAGCTGGTTTCCATAGGCAGGGCGTCCCAGTaGGTGTTCAGCTCTCAGCAGAGACGAAGCCCACAG | + |
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Preference number: 6 (lower is better) Translates to: SEQLVSIGRASQ*VFSSQQRRSPQ Trigger: CTGTGGGCTTCGTCTCTGCTGAGAGCTGAACACTCACTGGGACGCCCTGCCTATGGAAACCAGCTGTTCACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000654282.1 ENST00000669788.1 |
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| CDS CCA 72 bp | AGGAACCACAGAGCCCCAGAAAGGGTGTCACAGTCTTaGCTCTCCGATCTCCTAAGTCTGGGTTTGCCGAAG | + |
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Preference number: 6 (lower is better) Translates to: RNHRAPERVSQS*LSDLLSLGLPK Trigger: CTTCGGCAAACCCAGACTTAGGAGATCGGAGAGCCAAGACTGTGACACCCTTTCTGGGGCTCTGTGGTTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000654282.1 ENST00000669788.1 |
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| CDS CAA 72 bp | CAGGAACCACAGAGCCCCAGAAAGGGTGTCACAGTCTaGGCTCTCCGATCTCCTAAGTCTGGGTTTGCCGAA | + |
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Preference number: 6 (lower is better) Translates to: QEPQSPRKGVTV*ALRSPKSGFAE Trigger: TTCGGCAAACCCAGACTTAGGAGATCGGAGAGCCAAGACTGTGACACCCTTTCTGGGGCTCTGTGGTTCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000654282.1 ENST00000669788.1 |
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| CDS CAA 90 bp | GTGATACAACTGTCTGCAATGCTTGGGTCCTGTGCTTGCTTCCTGTaGGAAGTGGAGGGTGGAAAAGCAGGCACCAACACTGTGTGCCCC | + |
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Preference number: 6 (lower is better) Translates to: VIQLSAMLGSCACFL*EVEGGKAGTNTVCP Trigger: GGGGCACACAGTGTTGGTGCCTGCTTTTCCACCCTCCACTTCCAACAGGAAGCAAGCACAGGACCCAAGCATTGCAGACAGTTGTATCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000669788.1 |
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| CDS CAA 90 bp | GCACATTGGCGTGATACAACTGTCTGCAATGCTTGGGTCCTGTGCTaGCTTCCTGTTGGAAGTGGAGGGTGGAAAAGCAGGCACCAACAC | + |
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Preference number: 6 (lower is better) Translates to: AHWRDTTVCNAWVLC*LPVGSGGWKSRHQH Trigger: GTGTTGGTGCCTGCTTTTCCACCCTCCACTTCCAACAGGAAGCAAGCACAGGACCCAAGCATTGCAGACAGTTGTATCACGCCAATGTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000669788.1 |
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| CDS CAA 72 bp | TCACAGTCTTGGCTCTCCGATCTCCTAAGTCTGGGTTaGCCGAAGGGTCGCAGATCTTCTCTCCTTTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: SQSWLSDLLSLG*PKGRRSSLLSS Trigger: GGAAGAAAGGAGAGAAGATCTGCGACCCTTCGGCAAACCCAGACTTAGGAGATCGGAGAGCCAAGACTGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000654282.1 ENST00000669788.1 |
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| CDS CAA 72 bp | CGTGATACAACTGTCTGCAATGCTTGGGTCCTGTGCTaGCTTCCTGTTGGAAGTGGAGGGTGGAAAAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: RDTTVCNAWVLC*LPVGSGGWKSR Trigger: CCTGCTTTTCCACCCTCCACTTCCAACAGGAAGCAAGCACAGGACCCAAGCATTGCAGACAGTTGTATCACG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000669788.1 |
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| CDS CAA 90 bp | AAAGCAGGCACCAACACTGTGTGCCCCTGTAGTGGGAGGCAGTGTTaGCTGCCAGCTAACATTCATAGCGTAGAGAGTTTCCCAAACAGC | + |
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Preference number: 6 (lower is better) Translates to: KAGTNTVCPCSGRQC*LPANIHSVESFPNS Trigger: GCTGTTTGGGAAACTCTCTACGCTATGAATGTTAGCTGGCAGCAAACACTGCCTCCCACTACAGGGGCACACAGTGTTGGTGCCTGCTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000669788.1 |
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| CDS TCA 72 bp | GCAAGTCCCAAGTTCTTGTCCTGTGTCCAGGATGAATaGGGTAAGGCAGACAAATGGAGGGCGAGTAAGCAG | + |
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Preference number: 6 (lower is better) Translates to: ASPKFLSCVQDE*GKADKWRASKQ Trigger: CTGCTTACTCGCCCTCCATTTGTCTGCCTTACCTCATTCATCCTGGACACAGGACAAGAACTTGGGACTTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000654282.1 ENST00000669788.1 |
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| CDS TCA 72 bp | CAAGACTCTGTCAGTGGCTCCGAATGCACATTGGCGTaGTACAACTGTCTGCAATGCTTGGGTCCTGTGCTT | + |
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Preference number: 6 (lower is better) Translates to: QDSVSGSECTLA*YNCLQCLGPVL Trigger: AAGCACAGGACCCAAGCATTGCAGACAGTTGTATCACGCCAATGTGCATTCGGAGCCACTGACAGAGTCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000669788.1 |
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| CDS CCA 72 bp | CAAAGCAAGACTCTGTCAGTGGCTCCGAATGCACATTaGCGTGATACAACTGTCTGCAATGCTTGGGTCCTG | + |
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Preference number: 6 (lower is better) Translates to: QSKTLSVAPNAH*RDTTVCNAWVL Trigger: CAGGACCCAAGCATTGCAGACAGTTGTATCACGCCAATGTGCATTCGGAGCCACTGACAGAGTCTTGCTTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000669788.1 |
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| CDS CAA 72 bp | ACCAACACTGTGTGCCCCTGTAGTGGGAGGCAGTGTTaGCTGCCAGCTAACATTCATAGCGTAGAGAGTTTC | + |
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Preference number: 6 (lower is better) Translates to: TNTVCPCSGRQC*LPANIHSVESF Trigger: GAAACTCTCTACGCTATGAATGTTAGCTGGCAGCAAACACTGCCTCCCACTACAGGGGCACACAGTGTTGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000456627.1 ENST00000650541.1 ENST00000669788.1 |
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| CDS CCA 72 bp | CTAAGGTTTCCATTCCTTATTCTGCTCCTTCTTCAGTaGGCTCTACCTCTTCTGGCAGGCAGGAAGAGGGAA | + |
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Preference number: 6 (lower is better) Translates to: LRFPFLILLLLQ*ALPLLAGRKRE Trigger: TTCCCTCTTCCTGCCTGCCAGAAGAGGTAGAGCCCACTGAAGAAGGAGCAGAATAAGGAATGGAAACCTTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456627.1 |
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| CDS TCA 72 bp | TTTCTCCACATCCTCTCCAGCACTTTTCCGGAAGGTTaGGTGGTTGGGTTCATTGTCCAACCCTGTCACTTA | + |
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Preference number: 6 (lower is better) Translates to: FLHILSSTFPEG*VVGFIVQPCHL Trigger: TAAGTGACAGGGTTGGACAATGAACCCAACCACTCAACCTTCCGGAAAAGTGCTGGAGAGGATGTGGAGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000456627.1 |
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| CDS GCA 72 bp | GGAAGGATGGCAACTCATGGACCGTTCTTCCTCAACTaGTTATATCCTATTCCTCCTCATACAAGCCAGAGC | + |
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Preference number: 6 (lower is better) Translates to: GRMATHGPFFLN*LYPIPPHTSQS Trigger: GCTCTGGCTTGTATGAGGAGGAATAGGATATAAGCAGTTGAGGAAGAACGGTCCATGAGTTGCCATCCTTCC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456627.1 |
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| CDS CAA 72 bp | ATTTCTCCACATCCTCTCCAGCACTTTTCCGGAAGGTaGAGTGGTTGGGTTCATTGTCCAACCCTGTCACTT | + |
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Preference number: 6 (lower is better) Translates to: ISPHPLQHFSGR*SGWVHCPTLSL Trigger: AAGTGACAGGGTTGGACAATGAACCCAACCACTCAACCTTCCGGAAAAGTGCTGGAGAGGATGTGGAGAAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000456627.1 |
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| CDS GCA 72 bp | AGCTGTGTCCATCCCTCCTCTGATCAGACTTCTGGATaGCATCAAGGAGGTCTGCATAACCTAAGATTATTG | + |
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Preference number: 6 (lower is better) Translates to: SCVHPSSDQTSG*HQGGLHNLRLL Trigger: CAATAATCTTAGGTTATGCAGACCTCCTTGATGGCATCCAGAAGTCTGATCAGAGGAGGGATGGACACAGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650541.1 |
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| CDS CAA 90 bp | AGTGTTCCTATTTCTCCACATCCTCTCCAGCACTTTTCCGGAAGGTaGAGTGGTTGGGTTCATTGTCCAACCCTGTCACTTATTAGTCTA | + |
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Preference number: 6 (lower is better) Translates to: SVPISPHPLQHFSGR*SGWVHCPTLSLISL Trigger: TAGACTAATAAGTGACAGGGTTGGACAATGAACCCAACCACTCAACCTTCCGGAAAAGTGCTGGAGAGGATGTGGAGAAATAGGAACACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000456627.1 |
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| CDS TCA 72 bp | TGGCTGGGTCAAATGGTATTTCTAGTTCTACATCTCTaGGGAATCGCCACACTGACTTCCACAATGGTTGAA | + |
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Preference number: 6 (lower is better) Translates to: WLGQMVFLVLHL*GIATLTSTMVE Trigger: TTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGAGATGTAGAACTAGAAATACCATTTGACCCAGCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456627.1 |
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| CDS TCA 72 bp | TATATCCTATTCCTCCTCATACAAGCCAGAGCAGAGTaGGTTCTATTTTCCTCAGGAAAGGAATTGCTTCAC | + |
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Preference number: 6 (lower is better) Translates to: YILFLLIQARAE*VLFSSGKELLH Trigger: GTGAAGCAATTCCTTTCCTGAGGAAAATAGAACTCACTCTGCTCTGGCTTGTATGAGGAGGAATAGGATATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000456627.1 |
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| CDS TCA 72 bp | AGGAAGAGAGAAAGGCATTATTTGATTTGGCCAAAATaGGAGAGTGCGAGAGGCAAATTCTCAAATCCGACT | + |
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Preference number: 6 (lower is better) Translates to: RKRERHYLIWPK*ESARGKFSNPT Trigger: AGTCGGATTTGAGAATTTGCCTCTCGCACTCTCTCATTTTGGCCAAATCAAATAATGCCTTTCTCTCTTCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650541.1 |
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| CDS TCA 72 bp | ATACATCAGCGCTTAGGAAGAGAGAAAGGCATTATTTaGTTTGGCCAAAATGAGAGAGTGCGAGAGGCAAAT | + |
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Preference number: 6 (lower is better) Translates to: IHQRLGREKGII*FGQNERVREAN Trigger: ATTTGCCTCTCGCACTCTCTCATTTTGGCCAAATCAAATAATGCCTTTCTCTCTTCCTAAGCGCTGATGTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650541.1 |
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| CDS CCA 72 bp | TTGTTTAAAACTCACTTTTCCGGAAGGTTGAGTGGTTaGGTTCATTGTCCAACCCTGTCACTTATTAGTCTA | + |
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Preference number: 6 (lower is better) Translates to: LFKTHFSGRLSG*VHCPTLSLISL Trigger: TAGACTAATAAGTGACAGGGTTGGACAATGAACCCAACCACTCAACCTTCCGGAAAAGTGAGTTTTAAACAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000654282.1 ENST00000669788.1 |
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| CDS CAA 72 bp | TGTATGTGTCTTTATAGCAGCATGATTTATAATCCTTaGGGTACATACCCAGTAATGGGATGGCTGGGTCAA | + |
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Preference number: 6 (lower is better) Translates to: CMCLYSSMIYNP*GTYPVMGWLGQ Trigger: TTGACCCAGCCATCCCATTACTGGGTATGTACCCAAAGGATTATAAATCATGCTGCTATAAAGACACATACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456627.1 |
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| CDS CAA 90 bp | ACATACGTGTGTATGTGTCTTTATAGCAGCATGATTTATAATCCTTaGGGTACATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTT | + |
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Preference number: 6 (lower is better) Translates to: TYVCMCLYSSMIYNP*GTYPVMGWLGQMVF Trigger: AAATACCATTTGACCCAGCCATCCCATTACTGGGTATGTACCCAAAGGATTATAAATCATGCTGCTATAAAGACACATACACACGTATGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456627.1 |
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| CDS TCA 72 bp | TTCGAGTTTCATATTATAATAACTTTTCCGGAAGGTTaGGTGGTTGGGTTCATTGTCCAACCCTGTCACTTA | + |
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Preference number: 6 (lower is better) Translates to: FEFHIIITFPEG*VVGFIVQPCHL Trigger: TAAGTGACAGGGTTGGACAATGAACCCAACCACTCAACCTTCCGGAAAAGTTATTATAATATGAAACTCGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650541.1 |
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| CDS TCA 72 bp | ATAATCTATTGTTTAAAACTCACTTTTCCGGAAGGTTaGGTGGTTGGGTTCATTGTCCAACCCTGTCACTTA | + |
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Preference number: 6 (lower is better) Translates to: IIYCLKLTFPEG*VVGFIVQPCHL Trigger: TAAGTGACAGGGTTGGACAATGAACCCAACCACTCAACCTTCCGGAAAAGTGAGTTTTAAACAATAGATTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000654282.1 ENST00000669788.1 |
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| CDS GCA 72 bp | GTTACAAAACCCCCAAATTTAAGTTTGAGTACCCAATaGACAATAAGCCAAACACTGATACATCAGCGCTTA | + |
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Preference number: 6 (lower is better) Translates to: VTKPPNLSLSTQ*TISQTLIHQRL Trigger: TAAGCGCTGATGTATCAGTGTTTGGCTTATTGTGCATTGGGTACTCAAACTTAAATTTGGGGGTTTTGTAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000650541.1 |
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| CDS CCA 72 bp | ATTTATAATCCTTTGGGTACATACCCAGTAATGGGATaGCTGGGTCAAATGGTATTTCTAGTTCTACATCTC | + |
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Preference number: 6 (lower is better) Translates to: IYNPLGTYPVMG*LGQMVFLVLHL Trigger: GAGATGTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATGTACCCAAAGGATTATAAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456627.1 |
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| CDS CAA 72 bp | ATTCGAGTTTCATATTATAATAACTTTTCCGGAAGGTaGAGTGGTTGGGTTCATTGTCCAACCCTGTCACTT | + |
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Preference number: 6 (lower is better) Translates to: IRVSYYNNFSGR*SGWVHCPTLSL Trigger: AAGTGACAGGGTTGGACAATGAACCCAACCACTCAACCTTCCGGAAAAGTTATTATAATATGAAACTCGAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650541.1 |
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| CDS CCA 72 bp | TCATATTATAATAACTTTTCCGGAAGGTTGAGTGGTTaGGTTCATTGTCCAACCCTGTCACTTATTAGTCTA | + |
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Preference number: 6 (lower is better) Translates to: SYYNNFSGRLSG*VHCPTLSLISL Trigger: TAGACTAATAAGTGACAGGGTTGGACAATGAACCCAACCACTCAACCTTCCGGAAAAGTTATTATAATATGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650541.1 |
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| CDS CAA 72 bp | AAGAGTGAAATTGTTACAAAACCCCCAAATTTAAGTTaGAGTACCCAATGCACAATAAGCCAAACACTGATA | + |
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Preference number: 6 (lower is better) Translates to: KSEIVTKPPNLS*STQCTISQTLI Trigger: TATCAGTGTTTGGCTTATTGTGCATTGGGTACTCAAACTTAAATTTGGGGGTTTTGTAACAATTTCACTCTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000650541.1 |
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