Pregenerated sensors for LINC00353 (Homo sapiens)

Ensembl gene IDs: ENSG00000236176

Ensembl transcript IDs: ENST00000435401.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	AAAACAGTTTTTCTCTGTTCTCACGAGGATCCACAGCTTCATTCTTaGAGTCAGCGAGACAAAGAACCCACCGGAAGGAACCAATTCTGG	+
Preference number: 5 (lower is better) Translates to: KTVFLCSHEDPQLHS*SQRDKEPTGRNQFW Trigger: CCAGAATTGGTTCCTTCCGGTGGGTTCTTTGTCTCGCTGACTTCAAGAATGAAGCTGTGGATCCTCGTGAGAACAGAGAAAAACTGTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000435401.1
CDS CCA 90 bp	AAAGAAAACATCAGGCACAGAAGGCAGCATATGACTGAGTCCTTCTaGCTCTTACAGGCTTCAGATACACTTTTACAAGTGCCCTCCATA	+
Preference number: 5 (lower is better) Translates to: KENIRHRRQHMTESF*LLQASDTLLQVPSI Trigger: TATGGAGGGCACTTGTAAAAGTGTATCTGAAGCCTGTAAGAGCCAGAAGGACTCAGTCATATGCTGCCTTCTGTGCCTGATGTTTTCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000435401.1
CDS CCA 90 bp	CAGCGAGACAAAGAACCCACCGGAAGGAACCAATTCTGGGCACAATaGTACAGAAAATTCCATTCAGTTTCTTTCATTCACTATTTAATC	+
Preference number: 5 (lower is better) Translates to: QRDKEPTGRNQFWAQ*YRKFHSVSFIHYLI Trigger: GATTAAATAGTGAATGAAAGAAACTGAATGGAATTTTCTGTACCATTGTGCCCAGAATTGGTTCCTTCCGGTGGGTTCTTTGTCTCGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000435401.1
CDS TCA 72 bp	TTTCTCTGTTCTCACGAGGATCCACAGCTTCATTCTTaGAGTCAGCGAGACAAAGAACCCACCGGAAGGAAC	+
Preference number: 6 (lower is better) Translates to: FLCSHEDPQLHS*SQRDKEPTGRN Trigger: GTTCCTTCCGGTGGGTTCTTTGTCTCGCTGACTTCAAGAATGAAGCTGTGGATCCTCGTGAGAACAGAGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000435401.1
CDS CAA 90 bp	GAAAACAGTTTTTCTCTGTTCTCACGAGGATCCACAGCTTCATTCTaGAAGTCAGCGAGACAAAGAACCCACCGGAAGGAACCAATTCTG	+
Preference number: 6 (lower is better) Translates to: ENSFSLFSRGSTASF*KSARQRTHRKEPIL Trigger: CAGAATTGGTTCCTTCCGGTGGGTTCTTTGTCTCGCTGACTTCAAGAATGAAGCTGTGGATCCTCGTGAGAACAGAGAAAAACTGTTTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000435401.1
CDS CCA 72 bp	CAGCGAGACAAAGAACCCACCGGAAGGAACCAATTCTaGGCACAATGGTACAGAAAATTCCATTCAGTTTCT	+
Preference number: 6 (lower is better) Translates to: QRDKEPTGRNQF*AQWYRKFHSVS Trigger: AGAAACTGAATGGAATTTTCTGTACCATTGTGCCCAGAATTGGTTCCTTCCGGTGGGTTCTTTGTCTCGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000435401.1
CDS TCA 72 bp	AAAAGAAAACATCAGGCACAGAAGGCAGCATATGACTaGGTCCTTCTGGCTCTTACAGGCTTCAGATACACT	+
Preference number: 6 (lower is better) Translates to: KRKHQAQKAAYD*VLLALTGFRYT Trigger: AGTGTATCTGAAGCCTGTAAGAGCCAGAAGGACTCAGTCATATGCTGCCTTCTGTGCCTGATGTTTTCTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000435401.1
CDS CCA 72 bp	AAAGAACCCACCGGAAGGAACCAATTCTGGGCACAATaGTACAGAAAATTCCATTCAGTTTCTTTCATTCAC	+
Preference number: 6 (lower is better) Translates to: KEPTGRNQFWAQ*YRKFHSVSFIH Trigger: GTGAATGAAAGAAACTGAATGGAATTTTCTGTACCATTGTGCCCAGAATTGGTTCCTTCCGGTGGGTTCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000435401.1

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