Pregenerated sensors for LINC00345 (Homo sapiens)
Ensembl gene IDs: ENSG00000235660Ensembl transcript IDs: ENST00000443679.1, ENST00000647901.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AATACTCAGCCTCAGCCCAGTTCTGTGCCCTTGCTGGAGAGGTGTTaGGTTCATTTGGAGGAGAAGAGACACTCTGGCTGTTGTGTGGTC | + |
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Preference number: 5 (lower is better) Translates to: NTQPQPSSVPLLERC*VHLEEKRHSGCCVV Trigger: GACCACACAACAGCCAGAGTGTCTCTTCTCCTCCAAATGAACGCAACACCTCTCCAGCAAGGGCACAGAACTGGGCTGAGGCTGAGTATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647901.1 |
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| CDS TCA 90 bp | GTAATGGGATTGCTGCGTCAAATGCTATTCCTGCCTTTAGATCTTTaGGGAATTGCCATACTGTCTTCCACAAGGGTTGAACTAATTTAC | + |
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Preference number: 5 (lower is better) Translates to: VMGLLRQMLFLPLDL*GIAILSSTRVELIY Trigger: GTAAATTAGTTCAACCCTTGTGGAAGACAGTATGGCAATTCCTCAAAGATCTAAAGGCAGGAATAGCATTTGACGCAGCAATCCCATTAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647901.1 |
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| CDS GCA 90 bp | TTCCAGCAGTCCTGTAGCTTCCACAGGACTAGAAATGTTTCATACTaGATGAGGTCATGGGTTTATGGATGTTATTTAATTGTTATGCTT | + |
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Preference number: 5 (lower is better) Translates to: FQQSCSFHRTRNVSY*MRSWVYGCYLIVML Trigger: AAGCATAACAATTAAATAACATCCATAAACCCATGACCTCATGCAGTATGAAACATTTCTAGTCCTGTGGAAGCTACAGGACTGCTGGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443679.1 |
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| CDS GCA 90 bp | TCTGCAACCTTGCCAGTATCTGTTGTTTCTGGACTTCTTAATAATTaGCATTCTGACTGGCATGAGATGATATCTCATTGTGGTTTTGAT | + |
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Preference number: 5 (lower is better) Translates to: SATLPVSVVSGLLNN*HSDWHEMISHCGFD Trigger: ATCAAAACCACAATGAGATATCATCTCATGCCAGTCAGAATGGCAATTATTAAGAAGTCCAGAAACAACAGATACTGGCAAGGTTGCAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647901.1 |
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| CDS CCA 90 bp | CCAGTATCTGTTGTTTCTGGACTTCTTAATAATTGCCATTCTGACTaGCATGAGATGATATCTCATTGTGGTTTTGATTTGCCTTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: PVSVVSGLLNNCHSD*HEMISHCGFDLPFS Trigger: AGAGAAAGGCAAATCAAAACCACAATGAGATATCATCTCATGCCAGTCAGAATGGCAATTATTAAGAAGTCCAGAAACAACAGATACTGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647901.1 |
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| CDS CAA 72 bp | GCCTCAGCCCAGTTCTGTGCCCTTGCTGGAGAGGTGTaGCGTTCATTTGGAGGAGAAGAGACACTCTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: ASAQFCALAGEV*RSFGGEETLWL Trigger: CAGCCAGAGTGTCTCTTCTCCTCCAAATGAACGCAACACCTCTCCAGCAAGGGCACAGAACTGGGCTGAGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647901.1 |
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| CDS GCA 72 bp | CCTCAGCCCAGTTCTGTGCCCTTGCTGGAGAGGTGTTaGGTTCATTTGGAGGAGAAGAGACACTCTGGCTGT | + |
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Preference number: 6 (lower is better) Translates to: PQPSSVPLLERC*VHLEEKRHSGC Trigger: ACAGCCAGAGTGTCTCTTCTCCTCCAAATGAACGCAACACCTCTCCAGCAAGGGCACAGAACTGGGCTGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647901.1 |
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| CDS CCA 72 bp | GCAATACTCAGCCTCAGCCCAGTTCTGTGCCCTTGCTaGAGAGGTGTTGCGTTCATTTGGAGGAGAAGAGAC | + |
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Preference number: 6 (lower is better) Translates to: AILSLSPVLCPC*RGVAFIWRRRD Trigger: GTCTCTTCTCCTCCAAATGAACGCAACACCTCTCCAGCAAGGGCACAGAACTGGGCTGAGGCTGAGTATTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647901.1 |
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| CDS GCA 72 bp | TCAGCAATACTCAGCCTCAGCCCAGTTCTGTGCCCTTaGTGGAGAGGTGTTGCGTTCATTTGGAGGAGAAGA | + |
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Preference number: 6 (lower is better) Translates to: SAILSLSPVLCP*WRGVAFIWRRR Trigger: TCTTCTCCTCCAAATGAACGCAACACCTCTCCAGCAAGGGCACAGAACTGGGCTGAGGCTGAGTATTGCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647901.1 |
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| CDS CAA 72 bp | GCCATGGTGGTTTGCTGCACAGATCAACCCATCACCTaGGTATTAAGCCCAGCATCCATTATCTGTTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: AMVVCCTDQPIT*VLSPASIICSS Trigger: GGAAGAACAGATAATGGATGCTGGGCTTAATACCAAGGTGATGGGTTGATCTGTGCAGCAAACCACCATGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647901.1 |
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| CDS CCA 72 bp | GTGCAGTTTTGTTACATTGGTAAATGTGTGCCATGGTaGTTTGCTGCACAGATCAACCCATCACCTTGGTAT | + |
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Preference number: 6 (lower is better) Translates to: VQFCYIGKCVPW*FAAQINPSPWY Trigger: ATACCAAGGTGATGGGTTGATCTGTGCAGCAAACCACCATGGCACACATTTACCAATGTAACAAAACTGCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647901.1 |
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| CDS CAA 90 bp | CAGTGTAAAAGCTTTCCTTTTTCTCTGCAACCTTGCCAGTATCTGTaGTTTCTGGACTTCTTAATAATTGCCATTCTGACTGGCATGAGA | + |
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Preference number: 6 (lower is better) Translates to: QCKSFPFSLQPCQYL*FLDFLIIAILTGMR Trigger: TCTCATGCCAGTCAGAATGGCAATTATTAAGAAGTCCAGAAACAACAGATACTGGCAAGGTTGCAGAGAAAAAGGAAAGCTTTTACACTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000647901.1 |
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| CDS TCA 72 bp | TTGCTTTGGTTGCAATTGCTTTTGGTGTTTTTGTCATaGAATCCTTACCCGTGCCTATGTTCTAAACGGTAT | + |
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Preference number: 6 (lower is better) Translates to: LLWLQLLLVFLS*NPYPCLCSKRY Trigger: ATACCGTTTAGAACATAGGCACGGGTAAGGATTTCATGACAAAAACACCAAAAGCAATTGCAACCAAAGCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000647901.1 |
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| CDS CAA 72 bp | AGATTCTGGATATTAGGCCTTTGTCAGACAGACAGATaGCAAAAATTTTCTCCCATTCTGTATGCTGTCTGT | + |
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Preference number: 6 (lower is better) Translates to: RFWILGLCQTDR*QKFSPILYAVC Trigger: ACAGACAGCATACAGAATGGGAGAAAATTTTTGCAATCTGTCTGTCTGACAAAGGCCTAATATCCAGAATCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000647901.1 |
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| CDS CAA 72 bp | AGCTTTCCTTTTTCTCTGCAACCTTGCCAGTATCTGTaGTTTCTGGACTTCTTAATAATTGCCATTCTGACT | + |
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Preference number: 6 (lower is better) Translates to: SFPFSLQPCQYL*FLDFLIIAILT Trigger: AGTCAGAATGGCAATTATTAAGAAGTCCAGAAACAACAGATACTGGCAAGGTTGCAGAGAAAAAGGAAAGCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000647901.1 |
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| CDS GCA 72 bp | TCCTGTAGCTTCCACAGGACTAGAAATGTTTCATACTaGATGAGGTCATGGGTTTATGGATGTTATTTAATT | + |
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Preference number: 6 (lower is better) Translates to: SCSFHRTRNVSY*MRSWVYGCYLI Trigger: AATTAAATAACATCCATAAACCCATGACCTCATGCAGTATGAAACATTTCTAGTCCTGTGGAAGCTACAGGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443679.1 |
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| CDS GCA 72 bp | TTGCCAGTATCTGTTGTTTCTGGACTTCTTAATAATTaGCATTCTGACTGGCATGAGATGATATCTCATTGT | + |
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Preference number: 6 (lower is better) Translates to: LPVSVVSGLLNN*HSDWHEMISHC Trigger: ACAATGAGATATCATCTCATGCCAGTCAGAATGGCAATTATTAAGAAGTCCAGAAACAACAGATACTGGCAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647901.1 |
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| CDS GCA 72 bp | CGACAGTGTAAAAGCTTTCCTTTTTCTCTGCAACCTTaGCAGTATCTGTTGTTTCTGGACTTCTTAATAATT | + |
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Preference number: 6 (lower is better) Translates to: RQCKSFPFSLQP*QYLLFLDFLII Trigger: AATTATTAAGAAGTCCAGAAACAACAGATACTGGCAAGGTTGCAGAGAAAAAGGAAAGCTTTTACACTGTCG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000647901.1 |
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