Pregenerated sensors for LINC00342 (Homo sapiens)
Ensembl gene IDs: ENSG00000232931Ensembl transcript IDs: ENST00000448494.1, ENST00000657232.1, ENST00000660416.1, ENST00000661329.1, ENST00000662121.1, ENST00000663557.1
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CTGGGAGAATTCAAATCTCTGTCAGCCCCAGAACACTGGCGGGGGTaGCTGGAGGCCCTGGTTAGGAGATCCCTCAGTGGGCCAGACCCC | + |
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Preference number: 5 (lower is better) Translates to: LGEFKSLSAPEHWRG*LEALVRRSLSGPDP Trigger: GGGGTCTGGCCCACTGAGGGATCTCCTAACCAGGGCCTCCAGCCACCCCCGCCAGTGTTCTGGGGCTGACAGAGATTTGAATTCTCCCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000662121.1 |
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| CDS TCA 90 bp | GCCATGTTCACTCTCAATGATCTGAAAATGTGCTTCTCTCCTCCTTaGGTGCTGGCTGTAGATCATGGCTTGGCACTCCTAGGCTGCCCA | + |
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Preference number: 5 (lower is better) Translates to: AMFTLNDLKMCFSPP*VLAVDHGLALLGCP Trigger: TGGGCAGCCTAGGAGTGCCAAGCCATGATCTACAGCCAGCACTCAAGGAGGAGAGAAGCACATTTTCAGATCATTGAGAGTGAACATGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS GCA 90 bp | CCTCAGGGTTCTACCCCCGGAGAATACAGGTCAGCAACTGTTTATTaGAATCAGCAAGCAGGATGGAGAATTCATGCTGTGGGGGCCAAT | + |
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Preference number: 5 (lower is better) Translates to: PQGSTPGEYRSATVY*NQQAGWRIHAVGAN Trigger: ATTGGCCCCCACAGCATGAATTCTCCATCCTGCTTGCTGATTGCAATAAACAGTTGCTGACCTGTATTCTCCGGGGGTAGAACCCTGAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS CCA 90 bp | GGAGAATACAGGTCAGCAACTGTTTATTGCAATCAGCAAGCAGGATaGAGAATTCATGCTGTGGGGGCCAATCCAGGGGTTCCCTGTCTG | + |
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Preference number: 5 (lower is better) Translates to: GEYRSATVYCNQQAG*RIHAVGANPGVPCL Trigger: CAGACAGGGAACCCCTGGATTGGCCCCCACAGCATGAATTCTCCATCCTGCTTGCTGATTGCAATAAACAGTTGCTGACCTGTATTCTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS CCA 90 bp | GCACTTGGGCTTACTGGTCAGTTGGTAGAGTCTTGCTTGGTCATGTaGCTCCCCTATGTTTCCTCACAGTTGCAGCCATGTTCACTCTCA | + |
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Preference number: 5 (lower is better) Translates to: ALGLTGQLVESCLVM*LPYVSSQLQPCSLS Trigger: TGAGAGTGAACATGGCTGCAACTGTGAGGAAACATAGGGGAGCCACATGACCAAGCAAGACTCTACCAACTGACCAGTAAGCCCAAGTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS GCA 90 bp | GTCAGCAACTGTTTATTGCAATCAGCAAGCAGGATGGAGAATTCATaGTGTGGGGGCCAATCCAGGGGTTCCCTGTCTGTTATGAGCAGT | + |
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Preference number: 5 (lower is better) Translates to: VSNCLLQSASRMENS*CGGQSRGSLSVMSS Trigger: ACTGCTCATAACAGACAGGGAACCCCTGGATTGGCCCCCACAGCATGAATTCTCCATCCTGCTTGCTGATTGCAATAAACAGTTGCTGAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS CCA 90 bp | CCAGACAGTTCATCCAGGTTAAGAACTCTTGTTGGAGAACTGGTGTaGTTGTTTGAAGGACATATGACACAGAGGCCATTTGAGTTACTG | + |
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Preference number: 5 (lower is better) Translates to: PDSSSRLRTLVGELV*LFEGHMTQRPFELL Trigger: CAGTAACTCAAATGGCCTCTGTGTCATATGTCCTTCAAACAACCACACCAGTTCTCCAACAAGAGTTCTTAACCTGGATGAACTGTCTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS GCA 90 bp | GATGTGCTGCTGGATTTGGTTTGCCCGTATTTTGTTGAGGATTTTTaGATTGATGTTCATCAAGGGTATTGGCCTGAAGTTTGTGTGTGT | + |
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Preference number: 5 (lower is better) Translates to: DVLLDLVCPYFVEDF*IDVHQGYWPEVCVC Trigger: ACACACACAAACTTCAGGCCAATACCCTTGATGAACATCAATGCAAAAATCCTCAACAAAATACGGGCAAACCAAATCCAGCAGCACATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000663557.1 |
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| CDS CCA 90 bp | ATTTCGGAGCTTGTTATTGGTCTGTTCAGCAAATCAATTTCTTCCTaGCTCAGTTGTGGGAGGGTGTATTTGTCCAGGAATTTATCCATC | + |
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Preference number: 5 (lower is better) Translates to: ISELVIGLFSKSISS*LSCGRVYLSRNLSI Trigger: GATGGATAAATTCCTGGACAAATACACCCTCCCACAACTGAGCCAGGAAGAAATTGATTTGCTGAACAGACCAATAACAAGCTCCGAAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663557.1 |
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| CDS CCA 90 bp | CCGTATTTTGTTGAGGATTTTTGCATTGATGTTCATCAAGGGTATTaGCCTGAAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT | + |
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Preference number: 5 (lower is better) Translates to: PYFVEDFCIDVHQGY*PEVCVCVCVCVCVC Trigger: ACACACACACACACACACACACACACACACACAAACTTCAGGCCAATACCCTTGATGAACATCAATGCAAAAATCCTCAACAAAATACGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000663557.1 |
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| CDS TCA 90 bp | GCTTCTAGATCCTTCAGGAATTGCCACACTGTCTTCCACAATGGTTaGACTAGTTTACGTTCCCAACAGTATAAAAGTGTTCCTGTTTCT | + |
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Preference number: 5 (lower is better) Translates to: ASRSFRNCHTVFHNG*TSLRSQQYKSVPVS Trigger: AGAAACAGGAACACTTTTATACTGTTGGGAACGTAAACTAGTTCAACCATTGTGGAAGACAGTGTGGCAATTCCTGAAGGATCTAGAAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000660416.1 ENST00000663557.1 |
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| CDS CCA 90 bp | GGACATATGACACAGAGGCCATTTGAGTTACTGGAGTTCTTGCATTaGTTTCTTCTCATTTCCACCTATGGGTTTTCCTTTAATTGCAGT | + |
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Preference number: 5 (lower is better) Translates to: GHMTQRPFELLEFLH*FLLISTYGFSFNCS Trigger: ACTGCAATTAAAGGAAAACCCATAGGTGGAAATGAGAAGAAACCAATGCAAGAACTCCAGTAACTCAAATGGCCTCTGTGTCATATGTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS CCA 90 bp | GTGTCCATGTGTTCTCATTGTTCAGTTCCCACTTATGAGAACATGTaGTGTTTGGTTTCCTGTTCCTGTGTTAATTGGCTGAAGTTTATG | + |
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Preference number: 5 (lower is better) Translates to: VSMCSHCSVPTYENM*CLVSCSCVNWLKFM Trigger: CATAAACTTCAGCCAATTAACACAGGAACAGGAAACCAAACACCACATGTTCTCATAAGTGGGAACTGAACAATGAGAACACATGGACAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000657232.1 ENST00000660416.1 ENST00000663557.1 |
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| CDS CCA 90 bp | TGTTATTGGTCTGTTCAGCAAATCAATTTCTTCCTGGCTCAGTTGTaGGAGGGTGTATTTGTCCAGGAATTTATCCATCTCTTTGAAGTT | + |
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Preference number: 5 (lower is better) Translates to: CYWSVQQINFFLAQL*EGVFVQEFIHLFEV Trigger: AACTTCAAAGAGATGGATAAATTCCTGGACAAATACACCCTCCCACAACTGAGCCAGGAAGAAATTGATTTGCTGAACAGACCAATAACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663557.1 |
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| CDS GCA 90 bp | GGTTGCTTGTTCACTCTGATGATAGTTTCTTTCCCTGTGCAGAAGTaGTTACGTTTAATTAGATCCCATTTGTCAATTTTTGCTTTTGTT | + |
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Preference number: 5 (lower is better) Translates to: GCLFTLMIVSFPVQK*LRLIRSHLSIFAFV Trigger: AACAAAAGCAAAAATTGACAAATGGGATCTAATTAAACGTAAGCACTTCTGCACAGGGAAAGAAACTATCATCAGAGTGAACAAGCAACC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000660416.1 |
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| CDS GCA 90 bp | GTGTGTATTTGGTATGAGTTCAGTTGTTTTGCATTTGCTGAGGATTaGTTTATGTCCAATTATGTGGTTGATTTTAGAGTATGTGGCATA | + |
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Preference number: 5 (lower is better) Translates to: VCIWYEFSCFAFAED*FMSNYVVDFRVCGI Trigger: TATGCCACATACTCTAAAATCAACCACATAATTGGACATAAAGCAATCCTCAGCAAATGCAAAACAACTGAACTCATACCAAATACACAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000657232.1 ENST00000660416.1 ENST00000663557.1 |
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| CDS CCA 72 bp | GGCTTTCAGTTGCCCCTGGAGGCTCTGTCCAGGGAGTaGCTGAGTTGCTACTGGCTCGACAGCTCTGGCAGG | + |
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Preference number: 6 (lower is better) Translates to: GFQLPLEALSRE*LSCYWLDSSGR Trigger: CCTGCCAGAGCTGTCGAGCCAGTAGCAACTCAGCCACTCCCTGGACAGAGCCTCCAGGGGCAACTGAAAGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS CCA 72 bp | TTCAAATCTCTGTCAGCCCCAGAACACTGGCGGGGGTaGCTGGAGGCCCTGGTTAGGAGATCCCTCAGTGGG | + |
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Preference number: 6 (lower is better) Translates to: FKSLSAPEHWRG*LEALVRRSLSG Trigger: CCCACTGAGGGATCTCCTAACCAGGGCCTCCAGCCACCCCCGCCAGTGTTCTGGGGCTGACAGAGATTTGAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000662121.1 |
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| CDS CAA 90 bp | GCAAGGACAGTTCCACTGCAGAAGCAGTGGCAGAGAGGCTTTCAGTaGCCCCTGGAGGCTCTGTCCAGGGAGTGGCTGAGTTGCTACTGG | + |
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Preference number: 6 (lower is better) Translates to: ARTVPLQKQWQRGFQ*PLEALSREWLSCYW Trigger: CCAGTAGCAACTCAGCCACTCCCTGGACAGAGCCTCCAGGGGCAACTGAAAGCCTCTCTGCCACTGCTTCTGCAGTGGAACTGTCCTTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS CCA 72 bp | CTGAAATCACTGTCAGCAGGAGAACACCAGTGGGGGTaGCTGGAGGCCCCAGTTGGGAAGTCCCAAACAGTG | + |
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Preference number: 6 (lower is better) Translates to: LKSLSAGEHQWG*LEAPVGKSQTV Trigger: CACTGTTTGGGACTTCCCAACTGGGGCCTCCAGCCACCCCCACTGGTGTTCTCCTGCTGACAGTGATTTCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS CCA 72 bp | GTGCTTCTCTCCTCCTTGAGTGCTGGCTGTAGATCATaGCTTGGCACTCCTAGGCTGCCCACTGCAGCTCTG | + |
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Preference number: 6 (lower is better) Translates to: VLLSSLSAGCRS*LGTPRLPTAAL Trigger: CAGAGCTGCAGTGGGCAGCCTAGGAGTGCCAAGCCATGATCTACAGCCAGCACTCAAGGAGGAGAGAAGCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS CCA 72 bp | GGGCCAATCCAGGGGTTCCCTGTCTGTTATGAGCAGTaGGGAGTGTGTAAAACCCGTGGGAGATGGGCTTTG | + |
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Preference number: 6 (lower is better) Translates to: GPIQGFPVCYEQ*GVCKTRGRWAL Trigger: CAAAGCCCATCTCCCACGGGTTTTACACACTCCCCACTGCTCATAACAGACAGGGAACCCCTGGATTGGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS GCA 72 bp | ACAGTCTGGCCACTTTTCCATAGGGCTGCTGCAGTATaGCCAGGGCCCACTTCAGTCTCTAGTAGCCTCAGA | + |
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Preference number: 6 (lower is better) Translates to: TVWPLFHRAAAV*PGPTSVSSSLR Trigger: TCTGAGGCTACTAGAGACTGAAGTGGGCCCTGGGCATACTGCAGCAGCCCTATGGAAAAGTGGCCAGACTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS GCA 72 bp | GTGCTGGCTGTAGATCATGGCTTGGCACTCCTAGGCTaGCCACTGCAGCTCTGGGGCAATCTCAGTGTTTAT | + |
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Preference number: 6 (lower is better) Translates to: VLAVDHGLALLG*PLQLWGNLSVY Trigger: ATAAACACTGAGATTGCCCCAGAGCTGCAGTGGGCAGCCTAGGAGTGCCAAGCCATGATCTACAGCCAGCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS TCA 72 bp | GGCCCCAGTTGGGAAGTCCCAAACAGTGAGGAGGAATaGATCCGGGACCTGCTTAAAGAAGCAGTCTGGCTA | + |
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Preference number: 6 (lower is better) Translates to: GPSWEVPNSEEE*IRDLLKEAVWL Trigger: TAGCCAGACTGCTTCTTTAAGCAGGTCCCGGATTCATTCCTCCTCACTGTTTGGGACTTCCCAACTGGGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS CCA 72 bp | GCTATGCTGAGGGTCCACATCAGCCCCTGGTCTCCTTaGACACTCCAAAGACTGAAGGTTGAAGTGGTTAAG | + |
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Preference number: 6 (lower is better) Translates to: AMLRVHISPWSP*TLQRLKVEVVK Trigger: CTTAACCACTTCAACCTTCAGTCTTTGGAGTGTCCAAGGAGACCAGGGGCTGATGTGGACCCTCAGCATAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS CAA 90 bp | TCCTCAGGGTTCTACCCCCGGAGAATACAGGTCAGCAACTGTTTATaGCAATCAGCAAGCAGGATGGAGAATTCATGCTGTGGGGGCCAA | + |
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Preference number: 6 (lower is better) Translates to: SSGFYPRRIQVSNCL*QSASRMENSCCGGQ Trigger: TTGGCCCCCACAGCATGAATTCTCCATCCTGCTTGCTGATTGCAATAAACAGTTGCTGACCTGTATTCTCCGGGGGTAGAACCCTGAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS CCA 72 bp | CATGGCTTGGCACTCCTAGGCTGCCCACTGCAGCTCTaGGGCAATCTCAGTGTTTATATTTCTTCCCTAACT | + |
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Preference number: 6 (lower is better) Translates to: HGLALLGCPLQL*GNLSVYISSLT Trigger: AGTTAGGGAAGAAATATAAACACTGAGATTGCCCCAGAGCTGCAGTGGGCAGCCTAGGAGTGCCAAGCCATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS CCA 72 bp | GCTGAAGCTTTGGGATGTGATCCAGTAGGTGGCACTTaGGCTTACTGGTCAGTTGGTAGAGTCTTGCTTGGT | + |
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Preference number: 6 (lower is better) Translates to: AEALGCDPVGGT*AYWSVGRVLLG Trigger: ACCAAGCAAGACTCTACCAACTGACCAGTAAGCCCAAGTGCCACCTACTGGATCACATCCCAAAGCTTCAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS TCA 72 bp | AAGGTTGAAGTGGTTAAGTTGCAAAAACAGCAAACATaGTGGCCTGCCCCTCCATCAGGGAGCTCCAGCCAA | + |
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Preference number: 6 (lower is better) Translates to: KVEVVKLQKQQT*WPAPPSGSSSQ Trigger: TTGGCTGGAGCTCCCTGATGGAGGGGCAGGCCATCATGTTTGCTGTTTTTGCAACTTAACCACTTCAACCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS GCA 72 bp | GGACTCCTTAAAGCCCAAAGGTTGGAATGGCTAAGTTaGCAAAACATCAAATATGGCAGCCCACCCCTCCCT | + |
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Preference number: 6 (lower is better) Translates to: GLLKAQRLEWLS*QNIKYGSPPLP Trigger: AGGGAGGGGTGGGCTGCCATATTTGATGTTTTGGCAACTTAGCCATTCCAACCTTTGGGCTTTAAGGAGTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS CCA 72 bp | AGGTCAGCAACTGTTTATTGCAATCAGCAAGCAGGATaGAGAATTCATGCTGTGGGGGCCAATCCAGGGGTT | + |
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Preference number: 6 (lower is better) Translates to: RSATVYCNQQAG*RIHAVGANPGV Trigger: AACCCCTGGATTGGCCCCCACAGCATGAATTCTCCATCCTGCTTGCTGATTGCAATAAACAGTTGCTGACCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS CCA 72 bp | CTTACTGGTCAGTTGGTAGAGTCTTGCTTGGTCATGTaGCTCCCCTATGTTTCCTCACAGTTGCAGCCATGT | + |
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Preference number: 6 (lower is better) Translates to: LTGQLVESCLVM*LPYVSSQLQPC Trigger: ACATGGCTGCAACTGTGAGGAAACATAGGGGAGCCACATGACCAAGCAAGACTCTACCAACTGACCAGTAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS CAA 90 bp | GCTATATCCACCCTAAGTCAGCTGGGACTCCTTAAAGCCCAAAGGTaGGAATGGCTAAGTTGCCAAAACATCAAATATGGCAGCCCACCC | + |
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Preference number: 6 (lower is better) Translates to: AISTLSQLGLLKAQR*EWLSCQNIKYGSPP Trigger: GGGTGGGCTGCCATATTTGATGTTTTGGCAACTTAGCCATTCCAACCTTTGGGCTTTAAGGAGTCCCAGCTGACTTAGGGTGGATATAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS TCA 72 bp | TCCTCACAGTTGCAGCCATGTTCACTCTCAATGATCTaGAAATGTGCTTCTCTCCTCCTTGAGTGCTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: SSQLQPCSLSMI*KCASLLLECWL Trigger: CAGCCAGCACTCAAGGAGGAGAGAAGCACATTTTCAGATCATTGAGAGTGAACATGGCTGCAACTGTGAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS CAA 72 bp | GGAGTTATCATCAGTGAAGGCTGTGAAACAGAAAAGTaGGCAGCCTACTGCTCCCTTTGGAAGCTTTGCCCT | + |
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Preference number: 6 (lower is better) Translates to: GVIISEGCETEK*AAYCSLWKLCP Trigger: AGGGCAAAGCTTCCAAAGGGAGCAGTAGGCTGCCAACTTTTCTGTTTCACAGCCTTCACTGATGATAACTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS CAA 72 bp | GAAGGGACATTAGTAGTGGTTGTAGCCAAGGGTCTTTaGTTTGTCTCCTCAGGGTTCTACCCCCGGAGAATA | + |
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Preference number: 6 (lower is better) Translates to: EGTLVVVVAKGL*FVSSGFYPRRI Trigger: TATTCTCCGGGGGTAGAACCCTGAGGAGACAAACAAAAGACCCTTGGCTACAACCACTACTAATGTCCCTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS TCA 72 bp | ACTCTCAATGATCTGAAAATGTGCTTCTCTCCTCCTTaGGTGCTGGCTGTAGATCATGGCTTGGCACTCCTA | + |
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Preference number: 6 (lower is better) Translates to: TLNDLKMCFSPP*VLAVDHGLALL Trigger: TAGGAGTGCCAAGCCATGATCTACAGCCAGCACTCAAGGAGGAGAGAAGCACATTTTCAGATCATTGAGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS GCA 72 bp | TCTACCCCCGGAGAATACAGGTCAGCAACTGTTTATTaGAATCAGCAAGCAGGATGGAGAATTCATGCTGTG | + |
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Preference number: 6 (lower is better) Translates to: STPGEYRSATVY*NQQAGWRIHAV Trigger: CACAGCATGAATTCTCCATCCTGCTTGCTGATTGCAATAAACAGTTGCTGACCTGTATTCTCCGGGGGTAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS CCA 72 bp | AGTCAGCTGGGACTCCTTAAAGCCCAAAGGTTGGAATaGCTAAGTTGCCAAAACATCAAATATGGCAGCCCA | + |
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Preference number: 6 (lower is better) Translates to: SQLGLLKAQRLE*LSCQNIKYGSP Trigger: TGGGCTGCCATATTTGATGTTTTGGCAACTTAGCCATTCCAACCTTTGGGCTTTAAGGAGTCCCAGCTGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS TCA 72 bp | GTGTGTGTGTGTGTGTGCCAGATTTTGGTATCAAGATaGTGTTGGCCTCATAGAATGAGTTGGGGAGGAGTT | + |
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Preference number: 6 (lower is better) Translates to: VCVCVCQILVSR*CWPHRMSWGGV Trigger: AACTCCTCCCCAACTCATTCTATGAGGCCAACATCATCTTGATACCAAAATCTGGCACACACACACACACAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000663557.1 |
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| CDS CAA 72 bp | ACCCTAAGTCAGCTGGGACTCCTTAAAGCCCAAAGGTaGGAATGGCTAAGTTGCCAAAACATCAAATATGGC | + |
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Preference number: 6 (lower is better) Translates to: TLSQLGLLKAQR*EWLSCQNIKYG Trigger: GCCATATTTGATGTTTTGGCAACTTAGCCATTCCAACCTTTGGGCTTTAAGGAGTCCCAGCTGACTTAGGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS TCA 72 bp | ATGTTTCCTCACAGTTGCAGCCATGTTCACTCTCAATaGTCTGAAAATGTGCTTCTCTCCTCCTTGAGTGCT | + |
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Preference number: 6 (lower is better) Translates to: MFPHSCSHVHSQ*SENVLLSSLSA Trigger: AGCACTCAAGGAGGAGAGAAGCACATTTTCAGATCATTGAGAGTGAACATGGCTGCAACTGTGAGGAAACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS TCA 72 bp | CGTGTCCATGTGTTCTCATTGTTCAGTTCCCACTTATaGGAACATGTGGTGTTTGGTTTCCTGTTCCTGTGT | + |
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Preference number: 6 (lower is better) Translates to: RVHVFSLFSSHL*EHVVFGFLFLC Trigger: ACACAGGAACAGGAAACCAAACACCACATGTTCTCATAAGTGGGAACTGAACAATGAGAACACATGGACACG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000657232.1 ENST00000660416.1 ENST00000663557.1 |
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| CDS CCA 72 bp | GATGTGCAGGTTTGTTACATAGTTAAACATGTGCCATaGTGGTTTGCTGCACCTATCAACCTATCACCTAGG | + |
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Preference number: 6 (lower is better) Translates to: DVQVCYIVKHVP*WFAAPINLSPR Trigger: CCTAGGTGATAGGTTGATAGGTGCAGCAAACCACCATGGCACATGTTTAACTATGTAACAAACCTGCACATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000657232.1 ENST00000660416.1 ENST00000663557.1 |
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| CDS CAA 72 bp | TCCAGGTTAAGAACTCTTGTTGGAGAACTGGTGTGGTaGTTTGAAGGACATATGACACAGAGGCCATTTGAG | + |
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Preference number: 6 (lower is better) Translates to: SRLRTLVGELVW*FEGHMTQRPFE Trigger: CTCAAATGGCCTCTGTGTCATATGTCCTTCAAACAACCACACCAGTTCTCCAACAAGAGTTCTTAACCTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS CCA 72 bp | TCATCCAGGTTAAGAACTCTTGTTGGAGAACTGGTGTaGTTGTTTGAAGGACATATGACACAGAGGCCATTT | + |
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Preference number: 6 (lower is better) Translates to: SSRLRTLVGELV*LFEGHMTQRPF Trigger: AAATGGCCTCTGTGTCATATGTCCTTCAAACAACCACACCAGTTCTCCAACAAGAGTTCTTAACCTGGATGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS CCA 72 bp | AACATGTGGTGTTTGGTTTCCTGTTCCTGTGTTAATTaGCTGAAGTTTATGGCTTCCAGCTTCATCCATGTC | + |
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Preference number: 6 (lower is better) Translates to: NMWCLVSCSCVN*LKFMASSFIHV Trigger: GACATGGATGAAGCTGGAAGCCATAAACTTCAGCCAATTAACACAGGAACAGGAAACCAAACACCACATGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000660416.1 ENST00000663557.1 |
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| CDS CCA 72 bp | GTGCAGGTTTGTTACATAGTTAAACATGTGCCATGGTaGTTTGCTGCACCTATCAACCTATCACCTAGGTAT | + |
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Preference number: 6 (lower is better) Translates to: VQVCYIVKHVPW*FAAPINLSPRY Trigger: ATACCTAGGTGATAGGTTGATAGGTGCAGCAAACCACCATGGCACATGTTTAACTATGTAACAAACCTGCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000657232.1 ENST00000660416.1 ENST00000663557.1 |
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| CDS CCA 72 bp | TCTGTTCAGCAAATCAATTTCTTCCTGGCTCAGTTGTaGGAGGGTGTATTTGTCCAGGAATTTATCCATCTC | + |
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Preference number: 6 (lower is better) Translates to: SVQQINFFLAQL*EGVFVQEFIHL Trigger: GAGATGGATAAATTCCTGGACAAATACACCCTCCCACAACTGAGCCAGGAAGAAATTGATTTGCTGAACAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663557.1 |
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| CDS CCA 72 bp | CTTGTTATTGGTCTGTTCAGCAAATCAATTTCTTCCTaGCTCAGTTGTGGGAGGGTGTATTTGTCCAGGAAT | + |
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Preference number: 6 (lower is better) Translates to: LVIGLFSKSISS*LSCGRVYLSRN Trigger: ATTCCTGGACAAATACACCCTCCCACAACTGAGCCAGGAAGAAATTGATTTGCTGAACAGACCAATAACAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663557.1 |
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| CDS CCA 72 bp | GTTGAGGATTTTTGCATTGATGTTCATCAAGGGTATTaGCCTGAAGTTTGTGTGTGTGTGTGTGTGTGTGTG | + |
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Preference number: 6 (lower is better) Translates to: VEDFCIDVHQGY*PEVCVCVCVCV Trigger: CACACACACACACACACACACACAAACTTCAGGCCAATACCCTTGATGAACATCAATGCAAAAATCCTCAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000663557.1 |
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| CDS CAA 72 bp | TGGTCTGTTCAGCAAATCAATTTCTTCCTGGCTCAGTaGTGGGAGGGTGTATTTGTCCAGGAATTTATCCAT | + |
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Preference number: 6 (lower is better) Translates to: WSVQQINFFLAQ*WEGVFVQEFIH Trigger: ATGGATAAATTCCTGGACAAATACACCCTCCCACAACTGAGCCAGGAAGAAATTGATTTGCTGAACAGACCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663557.1 |
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| CDS CAA 90 bp | TGCTGCTGGATTTGGTTTGCCCGTATTTTGTTGAGGATTTTTGCATaGATGTTCATCAAGGGTATTGGCCTGAAGTTTGTGTGTGTGTGT | + |
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Preference number: 6 (lower is better) Translates to: CCWIWFARILLRIFA*MFIKGIGLKFVCVC Trigger: ACACACACACACAAACTTCAGGCCAATACCCTTGATGAACATCAATGCAAAAATCCTCAACAAAATACGGGCAAACCAAATCCAGCAGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000663557.1 |
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| CDS CCA 72 bp | ACACAGAGGCCATTTGAGTTACTGGAGTTCTTGCATTaGTTTCTTCTCATTTCCACCTATGGGTTTTCCTTT | + |
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Preference number: 6 (lower is better) Translates to: TQRPFELLEFLH*FLLISTYGFSF Trigger: AAAGGAAAACCCATAGGTGGAAATGAGAAGAAACCAATGCAAGAACTCCAGTAACTCAAATGGCCTCTGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS CCA 72 bp | TGTTCTCATTGTTCAGTTCCCACTTATGAGAACATGTaGTGTTTGGTTTCCTGTTCCTGTGTTAATTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: CSHCSVPTYENM*CLVSCSCVNWL Trigger: CAGCCAATTAACACAGGAACAGGAAACCAAACACCACATGTTCTCATAAGTGGGAACTGAACAATGAGAACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000657232.1 ENST00000660416.1 ENST00000663557.1 |
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| CDS CAA 72 bp | CATATGACACAGAGGCCATTTGAGTTACTGGAGTTCTaGCATTGGTTTCTTCTCATTTCCACCTATGGGTTT | + |
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Preference number: 6 (lower is better) Translates to: HMTQRPFELLEF*HWFLLISTYGF Trigger: AAACCCATAGGTGGAAATGAGAAGAAACCAATGCAAGAACTCCAGTAACTCAAATGGCCTCTGTGTCATATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661329.1 |
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| CDS CAA 90 bp | GCTTGTTATTGGTCTGTTCAGCAAATCAATTTCTTCCTGGCTCAGTaGTGGGAGGGTGTATTTGTCCAGGAATTTATCCATCTCTTTGAA | + |
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Preference number: 6 (lower is better) Translates to: ACYWSVQQINFFLAQ*WEGVFVQEFIHLFE Trigger: TTCAAAGAGATGGATAAATTCCTGGACAAATACACCCTCCCACAACTGAGCCAGGAAGAAATTGATTTGCTGAACAGACCAATAACAAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663557.1 |
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| CDS CAA 90 bp | TGGATTAACTTTTTGATGTGCTGCTGGATTTGGTTTGCCCGTATTTaGTTGAGGATTTTTGCATTGATGTTCATCAAGGGTATTGGCCTG | + |
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Preference number: 6 (lower is better) Translates to: WINFLMCCWIWFARI*LRIFALMFIKGIGL Trigger: CAGGCCAATACCCTTGATGAACATCAATGCAAAAATCCTCAACAAAATACGGGCAAACCAAATCCAGCAGCACATCAAAAAGTTAATCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000448494.1 ENST00000663557.1 |
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| CDS TCA 72 bp | TCCTTCAGGAATTGCCACACTGTCTTCCACAATGGTTaGACTAGTTTACGTTCCCAACAGTATAAAAGTGTT | + |
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Preference number: 6 (lower is better) Translates to: SFRNCHTVFHNG*TSLRSQQYKSV Trigger: AACACTTTTATACTGTTGGGAACGTAAACTAGTTCAACCATTGTGGAAGACAGTGTGGCAATTCCTGAAGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000660416.1 ENST00000663557.1 |
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| CDS TCA 72 bp | TATGGCCATTTTCATGAGACTGATTCTTCCCACCCATaGGCATGGAATATTTTTCCATTTGTTTGTGTCCTC | + |
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Preference number: 6 (lower is better) Translates to: YGHFHETDSSHP*AWNIFPFVCVL Trigger: GAGGACACAAACAAATGGAAAAATATTCCATGCTCATGGGTGGGAAGAATCAGTCTCATGAAAATGGCCATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000660416.1 |
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| CDS CAA 72 bp | TGGTATCAGTACCATGCTGTTTTGATTAGTGTGGCCTaGCAGTATAGTTTGAAGTCATATAGCATGATGCCT | + |
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Preference number: 6 (lower is better) Translates to: WYQYHAVLISVA*QYSLKSYSMMP Trigger: AGGCATCATGCTATATGACTTCAAACTATACTGCAAGGCCACACTAATCAAAACAGCATGGTACTGATACCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660416.1 |
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| CDS CAA 90 bp | TTTGTCAGATTGGTAGATGGCAAAAATATTCTCCCATTCTATAGGTaGCTTGTTCACTCTGATGATAGTTTCTTTCCCTGTGCAGAAGTG | + |
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Preference number: 6 (lower is better) Translates to: FVRLVDGKNILPFYR*LVHSDDSFFPCAEV Trigger: CACTTCTGCACAGGGAAAGAAACTATCATCAGAGTGAACAAGCAACCTATAGAATGGGAGAATATTTTTGCCATCTACCAATCTGACAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000660416.1 |
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| CDS CAA 72 bp | TTTTTGATGTGCTGCTGGATTTGGTTTGCCCGTATTTaGTTGAGGATTTTTGCATTGATGTTCATCAAGGGT | + |
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Preference number: 6 (lower is better) Translates to: FLMCCWIWFARI*LRIFALMFIKG Trigger: ACCCTTGATGAACATCAATGCAAAAATCCTCAACAAAATACGGGCAAACCAAATCCAGCAGCACATCAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000448494.1 ENST00000663557.1 |
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| CDS CAA 72 bp | TTGGTAGATGGCAAAAATATTCTCCCATTCTATAGGTaGCTTGTTCACTCTGATGATAGTTTCTTTCCCTGT | + |
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Preference number: 6 (lower is better) Translates to: LVDGKNILPFYR*LVHSDDSFFPC Trigger: ACAGGGAAAGAAACTATCATCAGAGTGAACAAGCAACCTATAGAATGGGAGAATATTTTTGCCATCTACCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000660416.1 |
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| CDS CAA 72 bp | AAGTCATATAGCATGATGCCTCCAGCTTTGTTCTTTTaGCTTAGGATTGTCTTGACTATTGAGTCTCTTTTT | + |
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Preference number: 6 (lower is better) Translates to: KSYSMMPPALFF*LRIVLTIESLF Trigger: AAAAAGAGACTCAATAGTCAAGACAATCCTAAGCAAAAAGAACAAAGCTGGAGGCATCATGCTATATGACTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660416.1 |
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| CDS TCA 72 bp | GATTTCATCATAAAATCTTTGCCTATGCCTATGTCCTaGATGGAACTTCCTAGATTTTCTTCTAGGGTTTTT | + |
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Preference number: 6 (lower is better) Translates to: DFIIKSLPMPMS*MELPRFSSRVF Trigger: AAAAACCCTAGAAGAAAATCTAGGAAGTTCCATTCAGGACATAGGCATAGGCAAAGATTTTATGATGAAATC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000660416.1 |
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| CDS GCA 72 bp | TTCACTCTGATGATAGTTTCTTTCCCTGTGCAGAAGTaGTTACGTTTAATTAGATCCCATTTGTCAATTTTT | + |
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Preference number: 6 (lower is better) Translates to: FTLMIVSFPVQK*LRLIRSHLSIF Trigger: AAAAATTGACAAATGGGATCTAATTAAACGTAAGCACTTCTGCACAGGGAAAGAAACTATCATCAGAGTGAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660416.1 |
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| CDS CAA 72 bp | CCTGTGCAGAAGTGCTTACGTTTAATTAGATCCCATTaGTCAATTTTTGCTTTTGTTGCAATTGCTATTGAT | + |
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Preference number: 6 (lower is better) Translates to: PVQKCLRLIRSH*SIFAFVAIAID Trigger: ATCAATAGCAATTGCAACAAAAGCAAAAATTGACAAATGGGATCTAATTAAACGTAAGCACTTCTGCACAGG 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000660416.1 |
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