Pregenerated sensors for LINC00339 (Homo sapiens)
Ensembl gene IDs: ENSG00000218510Ensembl transcript IDs: ENST00000404210.5, ENST00000416769.2, ENST00000420503.1, ENST00000434233.2, ENST00000452322.2, ENST00000634451.2, ENST00000634712.2, ENST00000634934.2, ENST00000635450.2, ENST00000635675.2, ENST00000641009.1, ENST00000642072.1
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CCACTATGCTGCCGCGGCTCCGAAGGCCTAGCCCGAGTGCGGAAATaGGCTTCTAGGGTCCCAGGACGAGGTCCACCTCCAGAGCTGCAG | + |
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Preference number: 5 (lower is better) Translates to: PLCCRGSEGLARVRK*ASRVPGRGPPPELQ Trigger: CTGCAGCTCTGGAGGTGGACCTCGTCCTGGGACCCTAGAAGCCCATTTCCGCACTCGGGCTAGGCCTTCGGAGCCGCGGCAGCATAGTGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000634712.2 ENST00000634934.2 ENST00000635450.2 ENST00000641009.1 |
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| CDS TCA 90 bp | TGGGCTTCTAGGGTCCCAGGACGAGGTCCACCTCCAGAGCTGCAGTaGGGTCCAAGTCAGCCCGAGGAGCCCGCAGGTCCCACATTTCAG | + |
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Preference number: 5 (lower is better) Translates to: WASRVPGRGPPPELQ*GPSQPEEPAGPTFQ Trigger: CTGAAATGTGGGACCTGCGGGCTCCTCGGGCTGACTTGGACCTCACTGCAGCTCTGGAGGTGGACCTCGTCCTGGGACCCTAGAAGCCCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000634712.2 ENST00000634934.2 ENST00000635450.2 ENST00000641009.1 |
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| CDS CCA 90 bp | CATTTCAGTCATTTCCCTACCCCAAAGGCAGGGACTCCCCGCTCCTaGGGCAGGCAGCCACTGTGGCCGCGAGCAAGCGTACTCGGGTTA | + |
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Preference number: 5 (lower is better) Translates to: HFSHFPTPKAGTPRS*GRQPLWPRASVLGL Trigger: TAACCCGAGTACGCTTGCTCGCGGCCACAGTGGCTGCCTGCCCCAGGAGCGGGGAGTCCCTGCCTTTGGGGTAGGGAAATGACTGAAATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000634712.2 ENST00000634934.2 ENST00000635450.2 ENST00000641009.1 |
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| CDS GCA 90 bp | CCGCTGCTACCATTTGTGGAATTCTGCCGGCCAGACACCCCACACTaGATTCCCTCACAACTGATCCTCCCGATAGCCCATGGGGTAGGC | + |
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Preference number: 5 (lower is better) Translates to: PLLPFVEFCRPDTPH*IPSQLILPIAHGVG Trigger: GCCTACCCCATGGGCTATCGGGAGGATCAGTTGTGAGGGAATGCAGTGTGGGGTGTCTGGCCGGCAGAATTCCACAAATGGTAGCAGCGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000641009.1 |
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| CDS CCA 90 bp | AGGGTCTCTGGTGGGAGCCCAGAAGGCTCTCGTGGAATCTGGACCTaGAAAGCAGGTAGTAGGACAACTTCTGGCTCCTCGGCCCATCAT | + |
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Preference number: 5 (lower is better) Translates to: RVSGGSPEGSRGIWT*KAGSRTTSGSSAHH Trigger: ATGATGGGCCGAGGAGCCAGAAGTTGTCCTACTACCTGCTTTCCAGGTCCAGATTCCACGAGAGCCTTCTGGGCTCCCACCAGAGACCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 11 transcripts: ENST00000404210.5 ENST00000416769.2 ENST00000420503.1 ENST00000434233.2 ENST00000452322.2 ENST00000634451.2 ENST00000634712.2 ENST00000634934.2 ENST00000635450.2 ENST00000635675.2 ENST00000641009.1 |
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| CDS GCA 90 bp | TTCCAGACTTCATTTGTGGAATTCTGCCGGCCAGACACCCCACACTaGATTCCCTCACAACTGATCCTCCCGATAGCCCATGGGGTAGGC | + |
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Preference number: 5 (lower is better) Translates to: FQTSFVEFCRPDTPH*IPSQLILPIAHGVG Trigger: GCCTACCCCATGGGCTATCGGGAGGATCAGTTGTGAGGGAATGCAGTGTGGGGTGTCTGGCCGGCAGAATTCCACAAATGAAGTCTGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000635450.2 |
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| CDS CCA 90 bp | CATGGTCTTAAAGTCTTCAACAGAGTCTTCACTGAGGGTCTCTGGTaGGAGCCCAGAAGGCTCTCGTGGAATCTGGACCTGGAAAGCAGG | + |
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Preference number: 5 (lower is better) Translates to: HGLKVFNRVFTEGLW*EPRRLSWNLDLESR Trigger: CCTGCTTTCCAGGTCCAGATTCCACGAGAGCCTTCTGGGCTCCCACCAGAGACCCTCAGTGAAGACTCTGTTGAAGACTTTAAGACCATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 11 transcripts: ENST00000404210.5 ENST00000416769.2 ENST00000420503.1 ENST00000434233.2 ENST00000452322.2 ENST00000634451.2 ENST00000634712.2 ENST00000634934.2 ENST00000635450.2 ENST00000635675.2 ENST00000641009.1 |
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| CDS TCA 90 bp | CAGGATCATAAACTCTTGATAAATTACTGCCCCAGGAACCTCCAGTaGCATCAACCGCTGCTACCATTTGTGGAATTCTGCCGGCCAGAC | + |
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Preference number: 5 (lower is better) Translates to: QDHKLLINYCPRNLQ*HQPLLPFVEFCRPD Trigger: GTCTGGCCGGCAGAATTCCACAAATGGTAGCAGCGGTTGATGTCACTGGAGGTTCCTGGGGCAGTAATTTATCAAGAGTTTATGATCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000641009.1 |
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| CDS TCA 90 bp | AGCAGGCTTATGAGTACTGGTAAGAAAGCTGTCCATATCACAACATaGCTAAGGTCCCGATCGATGTGTAGTATGACCCCCGATGCAGCT | + |
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Preference number: 5 (lower is better) Translates to: SRLMSTGKKAVHITT*LRSRSMCSMTPDAA Trigger: AGCTGCATCGGGGGTCATACTACACATCGATCGGGACCTTAGTCATGTTGTGATATGGACAGCTTTCTTACCAGTACTCATAAGCCTGCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000420503.1 ENST00000452322.2 ENST00000634451.2 |
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| CDS TCA 90 bp | AGCAGGCTTATGAGTACTGGTAAGAAAGCTGTCCATATCACAACATaGCTAAGGTCCCGATCGATGTGTAGTATGACCCCCGATCTACGC | + |
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Preference number: 5 (lower is better) Translates to: SRLMSTGKKAVHITT*LRSRSMCSMTPDLR Trigger: GCGTAGATCGGGGGTCATACTACACATCGATCGGGACCTTAGTCATGTTGTGATATGGACAGCTTTCTTACCAGTACTCATAAGCCTGCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000642072.1 |
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| CDS TCA 90 bp | ACATTCTTAGCAGCTTTTTCGCTCCGGAGAAGTTCTTTATCTTTCTaGGCCGCAGTTTGCCCAACTGCAAAATGGAAAGAGATGAAGCAG | + |
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Preference number: 5 (lower is better) Translates to: TFLAAFSLRRSSLSF*AAVCPTAKWKEMKQ Trigger: CTGCTTCATCTCTTTCCATTTTGCAGTTGGGCAAACTGCGGCTCAGAAAGATAAAGAACTTCTCCGGAGCGAAAAAGCTGCTAAGAATGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000434233.2 |
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| CDS GCA 90 bp | CCAAAGACAAGCTCAAAGAAAGTGGAAGTTCAGATTTCCCATGGGTaGAGTTGGATCTTGCATCCAAGAGAATGCTTGGTTGACTTCTCA | + |
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Preference number: 5 (lower is better) Translates to: PKTSSKKVEVQISHG*SWILHPRECLVDFS Trigger: TGAGAAGTCAACCAAGCATTCTCTTGGATGCAAGATCCAACTGCACCCATGGGAAATCTGAACTTCCACTTTCTTTGAGCTTGTCTTTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000404210.5 ENST00000416769.2 ENST00000434233.2 ENST00000634712.2 ENST00000634934.2 ENST00000635675.2 |
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| CDS TCA 90 bp | CTTAGGGTGAGTTGGACTAAAATATTTCGTCCAAGAAAGGTTGGGTaGAACACTGTGGGAAAGCAAAATCTTGGGAACAACCTAAGTGAC | + |
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Preference number: 5 (lower is better) Translates to: LRVSWTKIFRPRKVG*NTVGKQNLGNNLSD Trigger: GTCACTTAGGTTGTTCCCAAGATTTTGCTTTCCCACAGTGTTTCACCCAACCTTTCTTGGACGAAATATTTTAGTCCAACTCACCCTAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452322.2 |
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| CDS TCA 90 bp | GGAAATAAAGCTGCCTCAGCCAAAGAGAGATCCAGACATGGGTTTTaGTGGATTCTTATTACAACCAAAGACAAGCTCAAAGAAAGTGGA | + |
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Preference number: 5 (lower is better) Translates to: GNKAASAKERSRHGF*WILITTKDKLKESG Trigger: TCCACTTTCTTTGAGCTTGTCTTTGGTTGTAATAAGAATCCATCAAAACCCATGTCTGGATCTCTCTTTGGCTGAGGCAGCTTTATTTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000404210.5 ENST00000416769.2 ENST00000434233.2 ENST00000634712.2 ENST00000634934.2 ENST00000635675.2 |
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| CDS TCA 90 bp | CTATCTAACATTGTGCCGAACGTTATACACAGATCCTCCTCCGTATaGTCCTTAGTTCAGGATCATAAACTCTTGATAAATTACTGCCCC | + |
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Preference number: 5 (lower is better) Translates to: LSNIVPNVIHRSSSV*SLVQDHKLLINYCP Trigger: GGGGCAGTAATTTATCAAGAGTTTATGATCCTGAACTAAGGATCATACGGAGGAGGATCTGTGTATAACGTTCGGCACAATGTTAGATAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000641009.1 |
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| CDS CCA 90 bp | GTTTTGATGGATTCTTATTACAACCAAAGACAAGCTCAAAGAAAGTaGAAGTTCAGATTTCCCATGGGTGCAGTTGGATCTTGCATCCAA | + |
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Preference number: 5 (lower is better) Translates to: VLMDSYYNQRQAQRK*KFRFPMGAVGSCIQ Trigger: TTGGATGCAAGATCCAACTGCACCCATGGGAAATCTGAACTTCCACTTTCTTTGAGCTTGTCTTTGGTTGTAATAAGAATCCATCAAAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000404210.5 ENST00000416769.2 ENST00000434233.2 ENST00000634712.2 ENST00000634934.2 ENST00000635675.2 |
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| CDS CCA 72 bp | GCAGGGACTCCCCGCTCCTGGGGCAGGCAGCCACTGTaGCCGCGAGCAAGCGTACTCGGGTTAGGAAGGAGA | + |
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Preference number: 6 (lower is better) Translates to: AGTPRSWGRQPL*PRASVLGLGRR Trigger: TCTCCTTCCTAACCCGAGTACGCTTGCTCGCGGCCACAGTGGCTGCCTGCCCCAGGAGCGGGGAGTCCCTGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000634712.2 ENST00000634934.2 ENST00000635450.2 ENST00000641009.1 |
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| CDS CCA 72 bp | GACTCCAGGAAAGGGAGACCACCACTCCCCGAGCTTTaGAGCGCCGCGCGGGAACCGGAAGTCATGCCCCGC | + |
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Preference number: 6 (lower is better) Translates to: DSRKGRPPLPEL*SAAREPEVMPR Trigger: GCGGGGCATGACTTCCGGTTCCCGCGCGGCGCTCCAAAGCTCGGGGAGTGGTGGTCTCCCTTTCCTGGAGTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000634934.2 |
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| CDS CCA 72 bp | TGCCGCGGCTCCGAAGGCCTAGCCCGAGTGCGGAAATaGGCTTCTAGGGTCCCAGGACGAGGTCCACCTCCA | + |
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Preference number: 6 (lower is better) Translates to: CRGSEGLARVRK*ASRVPGRGPPP Trigger: TGGAGGTGGACCTCGTCCTGGGACCCTAGAAGCCCATTTCCGCACTCGGGCTAGGCCTTCGGAGCCGCGGCA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000634712.2 ENST00000634934.2 ENST00000635450.2 ENST00000641009.1 |
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| CDS TCA 72 bp | TCAGCCACCACCGTCCAGCAAGGTCCTAGAGATGCCTaGGGACATCCCTGGGGCCAGCTGCATCCTCATAGC | + |
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Preference number: 6 (lower is better) Translates to: SATTVQQGPRDA*GHPWGQLHPHS Trigger: GCTATGAGGATGCAGCTGGCCCCAGGGATGTCCTCAGGCATCTCTAGGACCTTGCTGGACGGTGGTGGCTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000404210.5 ENST00000416769.2 ENST00000420503.1 ENST00000434233.2 ENST00000634712.2 ENST00000634934.2 ENST00000635675.2 |
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| CDS TCA 72 bp | GAATCGCTTGAACCCATGTGGCAGAGAAGGTTGCAGTaGGGCGACAACGCGGCACTGCAACTCCGGCCTGGG | + |
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Preference number: 6 (lower is better) Translates to: ESLEPMWQRRLQ*GDNAALQLRPG Trigger: CCCAGGCCGGAGTTGCAGTGCCGCGTTGTCGCCTCACTGCAACCTTCTCTGCCACATGGGTTCAAGCGATTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000641009.1 |
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| CDS CCA 72 bp | GTCTCTGGTGGGAGCCCAGAAGGCTCTCGTGGAATCTaGACCTGGAAAGCAGGTAGTAGGACAACTTCTGGC | + |
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Preference number: 6 (lower is better) Translates to: VSGGSPEGSRGI*TWKAGSRTTSG Trigger: GCCAGAAGTTGTCCTACTACCTGCTTTCCAGGTCCAGATTCCACGAGAGCCTTCTGGGCTCCCACCAGAGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 11 transcripts: ENST00000404210.5 ENST00000416769.2 ENST00000420503.1 ENST00000434233.2 ENST00000452322.2 ENST00000634451.2 ENST00000634712.2 ENST00000634934.2 ENST00000635450.2 ENST00000635675.2 ENST00000641009.1 |
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| CDS CAA 72 bp | CCAGGAACCTCCAGTGACATCAACCGCTGCTACCATTaGTGGAATTCTGCCGGCCAGACACCCCACACTGCA | + |
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Preference number: 6 (lower is better) Translates to: PGTSSDINRCYH*WNSAGQTPHTA Trigger: TGCAGTGTGGGGTGTCTGGCCGGCAGAATTCCACAAATGGTAGCAGCGGTTGATGTCACTGGAGGTTCCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000641009.1 |
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| CDS GCA 72 bp | CCATTTGTGGAATTCTGCCGGCCAGACACCCCACACTaGATTCCCTCACAACTGATCCTCCCGATAGCCCAT | + |
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Preference number: 6 (lower is better) Translates to: PFVEFCRPDTPH*IPSQLILPIAH Trigger: ATGGGCTATCGGGAGGATCAGTTGTGAGGGAATGCAGTGTGGGGTGTCTGGCCGGCAGAATTCCACAAATGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000641009.1 |
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| CDS GCA 72 bp | ATTACTGCCCCAGGAACCTCCAGTGACATCAACCGCTaGTACCATTTGTGGAATTCTGCCGGCCAGACACCC | + |
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Preference number: 6 (lower is better) Translates to: ITAPGTSSDINR*YHLWNSAGQTP Trigger: GGGTGTCTGGCCGGCAGAATTCCACAAATGGTAGCAGCGGTTGATGTCACTGGAGGTTCCTGGGGCAGTAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000641009.1 |
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| CDS GCA 72 bp | TCATTTGTGGAATTCTGCCGGCCAGACACCCCACACTaGATTCCCTCACAACTGATCCTCCCGATAGCCCAT | + |
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Preference number: 6 (lower is better) Translates to: SFVEFCRPDTPH*IPSQLILPIAH Trigger: ATGGGCTATCGGGAGGATCAGTTGTGAGGGAATGCAGTGTGGGGTGTCTGGCCGGCAGAATTCCACAAATGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000635450.2 |
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| CDS TCA 72 bp | GGGAACAACCTAAGTGACCATCAACAGGGAAATGACTaGAGTACCGTCAACCACTCAGTGGTGCCGCCACGT | + |
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Preference number: 6 (lower is better) Translates to: GNNLSDHQQGND*STVNHSVVPPR Trigger: ACGTGGCGGCACCACTGAGTGGTTGACGGTACTTCAGTCATTTCCCTGTTGATGGTCACTTAGGTTGTTCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000452322.2 |
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| CDS CCA 72 bp | CTGCATTCCCTCACAACTGATCCTCCCGATAGCCCATaGGGTAGGCACTGTTATTTCCATTCACAGATAAGC | + |
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Preference number: 6 (lower is better) Translates to: LHSLTTDPPDSP*GRHCYFHSQIS Trigger: GCTTATCTGTGAATGGAAATAACAGTGCCTACCCCATGGGCTATCGGGAGGATCAGTTGTGAGGGAATGCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000635450.2 ENST00000641009.1 |
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| CDS CAA 72 bp | ACTCCAGTGCACTGCGCCCTTACTTCCTATCTAACATaGTGCCGAACGTTATACACAGATCCTCCTCCGTAT | + |
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Preference number: 6 (lower is better) Translates to: TPVHCALTSYLT*CRTLYTDPPPY Trigger: ATACGGAGGAGGATCTGTGTATAACGTTCGGCACAATGTTAGATAGGAAGTAAGGGCGCAGTGCACTGGAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000641009.1 |
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| CDS TCA 72 bp | GTGCAGTTGGATCTTGCATCCAAGAGAATGCTTGGTTaGCTTCTCATATGCAGGCTGAGCAAGAAGCAAGCA | + |
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Preference number: 6 (lower is better) Translates to: VQLDLASKRMLG*LLICRLSKKQA Trigger: TGCTTGCTTCTTGCTCAGCCTGCATATGAGAAGTCAACCAAGCATTCTCTTGGATGCAAGATCCAACTGCAC 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000404210.5 ENST00000416769.2 ENST00000434233.2 ENST00000634712.2 ENST00000634934.2 ENST00000635675.2 |
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| CDS CAA 72 bp | GCTCCGGAGAAGTTCTTTATCTTTCTGAGCCGCAGTTaGCCCAACTGCAAAATGGAAAGAGATGAAGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: APEKFFIFLSRS*PNCKMERDEAG Trigger: TCCTGCTTCATCTCTTTCCATTTTGCAGTTGGGCAAACTGCGGCTCAGAAAGATAAAGAACTTCTCCGGAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434233.2 |
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| CDS TCA 72 bp | ATGAGTACTGGTAAGAAAGCTGTCCATATCACAACATaGCTAAGGTCCCGATCGATGTGTAGTATGACCCCC | + |
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Preference number: 6 (lower is better) Translates to: MSTGKKAVHITT*LRSRSMCSMTP Trigger: GGGGGTCATACTACACATCGATCGGGACCTTAGTCATGTTGTGATATGGACAGCTTTCTTACCAGTACTCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000420503.1 ENST00000452322.2 ENST00000634451.2 ENST00000634934.2 ENST00000642072.1 |
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| CDS TCA 72 bp | AAACTCTTGATAAATTACTGCCCCAGGAACCTCCAGTaGCATCAACCGCTGCTACCATTTGTGGAATTCTGC | + |
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Preference number: 6 (lower is better) Translates to: KLLINYCPRNLQ*HQPLLPFVEFC Trigger: GCAGAATTCCACAAATGGTAGCAGCGGTTGATGTCACTGGAGGTTCCTGGGGCAGTAATTTATCAAGAGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000641009.1 |
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| CDS GCA 72 bp | AGCTCAAAGAAAGTGGAAGTTCAGATTTCCCATGGGTaGAGTTGGATCTTGCATCCAAGAGAATGCTTGGTT | + |
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Preference number: 6 (lower is better) Translates to: SSKKVEVQISHG*SWILHPRECLV Trigger: AACCAAGCATTCTCTTGGATGCAAGATCCAACTGCACCCATGGGAAATCTGAACTTCCACTTTCTTTGAGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000404210.5 ENST00000416769.2 ENST00000434233.2 ENST00000634712.2 ENST00000634934.2 ENST00000635675.2 |
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| CDS CCA 72 bp | GACAAGCTCAAAGAAAGTGGAAGTTCAGATTTCCCATaGGTGCAGTTGGATCTTGCATCCAAGAGAATGCTT | + |
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Preference number: 6 (lower is better) Translates to: DKLKESGSSDFP*VQLDLASKRML Trigger: AAGCATTCTCTTGGATGCAAGATCCAACTGCACCCATGGGAAATCTGAACTTCCACTTTCTTTGAGCTTGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000404210.5 ENST00000416769.2 ENST00000434233.2 ENST00000634712.2 ENST00000634934.2 ENST00000635675.2 |
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| CDS CAA 90 bp | AGCTTTTTCGCTCCGGAGAAGTTCTTTATCTTTCTGAGCCGCAGTTaGCCCAACTGCAAAATGGAAAGAGATGAAGCAGGAATTAAGATA | + |
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Preference number: 6 (lower is better) Translates to: SFFAPEKFFIFLSRS*PNCKMERDEAGIKI Trigger: TATCTTAATTCCTGCTTCATCTCTTTCCATTTTGCAGTTGGGCAAACTGCGGCTCAGAAAGATAAAGAACTTCTCCGGAGCGAAAAAGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000434233.2 |
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| CDS TCA 72 bp | ATCCTAATAGAGTACACTTCCAACTCTTTGGATATTTaGGAGCTCCAGGATTATCAAACCAGCTATAGCCGT | + |
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Preference number: 6 (lower is better) Translates to: ILIEYTSNSLDI*ELQDYQTSYSR Trigger: ACGGCTATAGCTGGTTTGATAATCCTGGAGCTCTCAAATATCCAAAGAGTTGGAAGTGTACTCTATTAGGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000404210.5 |
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| CDS TCA 72 bp | ATTGTGCCGAACGTTATACACAGATCCTCCTCCGTATaGTCCTTAGTTCAGGATCATAAACTCTTGATAAAT | + |
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Preference number: 6 (lower is better) Translates to: IVPNVIHRSSSV*SLVQDHKLLIN Trigger: ATTTATCAAGAGTTTATGATCCTGAACTAAGGATCATACGGAGGAGGATCTGTGTATAACGTTCGGCACAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000641009.1 |
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| CDS CCA 72 bp | TTGATCATTCTGGACTTCTGTATTTCTTTGTGTCTCTaGGTACACTTCAGTCTCAATTCTGGAACTCTAAGA | + |
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Preference number: 6 (lower is better) Translates to: LIILDFCISLCL*VHFSLNSGTLR Trigger: TCTTAGAGTTCCAGAATTGAGACTGAAGTGTACCCAGAGACACAAAGAAATACAGAAGTCCAGAATGATCAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 12 transcripts: ENST00000404210.5 ENST00000416769.2 ENST00000420503.1 ENST00000434233.2 ENST00000452322.2 ENST00000634451.2 ENST00000634712.2 ENST00000634934.2 ENST00000635450.2 ENST00000635675.2 ENST00000641009.1 ENST00000642072.1 |
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| CDS TCA 72 bp | CATAACCTTTCATTCATGCCACCAAACCAAGATTCATaGATTCTGAAAGTTAAAGTTGATTACCTCTTTGGA | + |
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Preference number: 6 (lower is better) Translates to: HNLSFMPPNQDS*ILKVKVDYLFG Trigger: TCCAAAGAGGTAATCAACTTTAACTTTCAGAATTCATGAATCTTGGTTTGGTGGCATGAATGAAAGGTTATG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000404210.5 ENST00000416769.2 ENST00000634712.2 ENST00000634934.2 ENST00000635675.2 |
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