Pregenerated sensors for LINC00337 (Homo sapiens)
Ensembl gene IDs: ENSG00000225077Ensembl transcript IDs: ENST00000429480.2, ENST00000441724.1, ENST00000650463.1
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AGCGGGCGGATCACGAAGTCAGGAGATGGATCCCGGCTAACACGGTaGAACCCCGTCTCTACTCAAATGATTCGCCAGCCTCGGCCTCCC | + |
|
Preference number: 5 (lower is better) Translates to: SGRITKSGDGSRLTR*NPVSTQMIRQPRPP Trigger: GGGAGGCCGAGGCTGGCGAATCATTTGAGTAGAGACGGGGTTTCACCGTGTTAGCCGGGATCCATCTCCTGACTTCGTGATCCGCCCGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000441724.1 |
||
| CDS TCA 90 bp | TGCATAGAATGGATTTGCCAAGGTCACAAAGCTAGGCCGCAGAGGTaGGGGGTCCGGGATTCTGGCCCAGGCTCTCCATCCAGCTTCCCA | + |
|
Preference number: 5 (lower is better) Translates to: CIEWICQGHKARPQR*GVRDSGPGSPSSFP Trigger: TGGGAAGCTGGATGGAGAGCCTGGGCCAGAATCCCGGACCCCTCACCTCTGCGGCCTAGCTTTGTGACCTTGGCAAATCCATTCTATGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000429480.2 ENST00000441724.1 ENST00000650463.1 |
||
| CDS TCA 90 bp | GTGTTGTCCCCAAGCATGGAGGGCTGGGTGCACAGTGGGTCTGTTTaGTCAGATTGCTTTCCTCTGTGGCGGGAAAGCAGGTCCCTGCAT | + |
|
Preference number: 5 (lower is better) Translates to: VLSPSMEGWVHSGSV*SDCFPLWRESRSLH Trigger: ATGCAGGGACCTGCTTTCCCGCCACAGAGGAAAGCAATCTGATCAAACAGACCCACTGTGCACCCAGCCCTCCATGCTTGGGGACAACAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000429480.2 |
||
| CDS CCA 90 bp | GGAGCAGAGGGAGATGTCCTGAGTCTGTGGGAGACCACAGGAAACTaGCGACAGTCACAGGAGCTCTCAGCTCCCAGGAACATTCACATC | + |
|
Preference number: 5 (lower is better) Translates to: GAEGDVLSLWETTGN*RQSQELSAPRNIHI Trigger: GATGTGAATGTTCCTGGGAGCTGAGAGCTCCTGTGACTGTCGCCAGTTTCCTGTGGTCTCCCACAGACTCAGGACATCTCCCTCTGCTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000429480.2 ENST00000441724.1 ENST00000650463.1 |
||
| CDS CCA 90 bp | CAGCTCTCTGAGCTACCTGTAATTCCAGTGCTTTGTGAGGCTGATTaGAGGATCACTTGGGCCCAGGAGTTCCAGACTGCCGCACTCCAG | + |
|
Preference number: 5 (lower is better) Translates to: QLSELPVIPVLCEAD*RITWAQEFQTAALQ Trigger: CTGGAGTGCGGCAGTCTGGAACTCCTGGGCCCAAGTGATCCTCCAATCAGCCTCACAAAGCACTGGAATTACAGGTAGCTCAGAGAGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000441724.1 |
||
| CDS TCA 90 bp | GATCAGAGGGTCTGTAGCGGCATTTCCTCATCCCTGTCTCATCTGTaGCCGGCAGAAGGCTGTTCAGGGTTCTCTGGAAACGAAGTCTCC | + |
|
Preference number: 5 (lower is better) Translates to: DQRVCSGISSSLSHL*PAEGCSGFSGNEVS Trigger: GGAGACTTCGTTTCCAGAGAACCCTGAACAGCCTTCTGCCGGTCACAGATGAGACAGGGATGAGGAAATGCCGCTACAGACCCTCTGATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650463.1 |
||
| CDS CCA 90 bp | GGAGGTGATGGGCAGAGGAGAGAGCATTGCTGTGGTTCTCCAGTCTaGTTACATATTACTCTACAACCCCGAGTGGCAACAGTCCCTGGG | + |
|
Preference number: 5 (lower is better) Translates to: GGDGQRREHCCGSPV*LHITLQPRVATVPG Trigger: CCCAGGGACTGTTGCCACTCGGGGTTGTAGAGTAATATGTAACCAGACTGGAGAACCACAGCAATGCTCTCTCCTCTGCCCATCACCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000429480.2 ENST00000650463.1 |
||
| CDS CCA 90 bp | GCTGTGGTTCTCCAGTCTGGTTACATATTACTCTACAACCCCGAGTaGCAACAGTCCCTGGGGGTAAATCAGGGCTGTCATACATTGAGG | + |
|
Preference number: 5 (lower is better) Translates to: AVVLQSGYILLYNPE*QQSLGVNQGCHTLR Trigger: CCTCAATGTATGACAGCCCTGATTTACCCCCAGGGACTGTTGCCACTCGGGGTTGTAGAGTAATATGTAACCAGACTGGAGAACCACAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000429480.2 ENST00000650463.1 |
||
| CDS CCA 90 bp | TGGCTGGTAAGAATTCCTTCGGAAATACTGGTTTTCAGGCGAGGGTaGACAGATCAGAGGGTCTGTAGCGGCATTTCCTCATCCCTGTCT | + |
|
Preference number: 5 (lower is better) Translates to: WLVRIPSEILVFRRG*TDQRVCSGISSSLS Trigger: AGACAGGGATGAGGAAATGCCGCTACAGACCCTCTGATCTGTCCACCCTCGCCTGAAAACCAGTATTTCCGAAGGAATTCTTACCAGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650463.1 |
||
| CDS TCA 90 bp | GGAAGGTCAGCAGCCCAGATCTGTACTCTGAGGACTGTGAATGACTaGGCTTCTCTTGGGTTCCTTTCAGATAGCCATCCGAGCTTGTTT | + |
|
Preference number: 5 (lower is better) Translates to: GRSAAQICTLRTVND*ASLGFLSDSHPSLF Trigger: AAACAAGCTCGGATGGCTATCTGAAAGGAACCCAAGAGAAGCTCAGTCATTCACAGTCCTCAGAGTACAGATCTGGGCTGCTGACCTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650463.1 |
||
| CDS GCA 90 bp | TTTCAGATAGCCATCCGAGCTTGTTTCCTGGGGTTTGTGTTCGGCTaGGGCACGCTGCTAAGTTTTAGCCAGTCTTCTTGGAGTCACTTT | + |
|
Preference number: 5 (lower is better) Translates to: FQIAIRACFLGFVFG*GTLLSFSQSSWSHF Trigger: AAAGTGACTCCAAGAAGACTGGCTAAAACTTAGCAGCGTGCCGCAGCCGAACACAAACCCCAGGAAACAAGCTCGGATGGCTATCTGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650463.1 |
||
| CDS TCA 72 bp | CCCAGGACCAGCTCCCTTCCAGGGGTGAAGGTGCGATaGGTGCCCTCTGGTGGTCCTGAGGTGTCCTGGAGC | + |
|
Preference number: 6 (lower is better) Translates to: PRTSSLPGVKVR*VPSGGPEVSWS Trigger: GCTCCAGGACACCTCAGGACCACCAGAGGGCACTCATCGCACCTTCACCCCTGGAAGGGAGCTGGTCCTGGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000429480.2 ENST00000441724.1 ENST00000650463.1 |
||
| CDS CCA 72 bp | GGAGAGCAGAAGCCAGGAAGGGCTTCCCAGGCACAGTaGGTTTTGGCCCCAGGACCAGCTCCCTTCCAGGGG | + |
|
Preference number: 6 (lower is better) Translates to: GEQKPGRASQAQ*VLAPGPAPFQG Trigger: CCCCTGGAAGGGAGCTGGTCCTGGGGCCAAAACCCACTGTGCCTGGGAAGCCCTTCCTGGCTTCTGCTCTCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000429480.2 ENST00000441724.1 ENST00000650463.1 |
||
| CDS CCA 72 bp | GGGAGGCCGAAGCGGGCGGATCACGAAGTCAGGAGATaGATCCCGGCTAACACGGTGAAACCCCGTCTCTAC | + |
|
Preference number: 6 (lower is better) Translates to: GRPKRADHEVRR*IPANTVKPRLY Trigger: GTAGAGACGGGGTTTCACCGTGTTAGCCGGGATCCATCTCCTGACTTCGTGATCCGCCCGCTTCGGCCTCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000441724.1 |
||
| CDS TCA 72 bp | TGGATTTGCCAAGGTCACAAAGCTAGGCCGCAGAGGTaGGGGGTCCGGGATTCTGGCCCAGGCTCTCCATCC | + |
|
Preference number: 6 (lower is better) Translates to: WICQGHKARPQR*GVRDSGPGSPS Trigger: GGATGGAGAGCCTGGGCCAGAATCCCGGACCCCTCACCTCTGCGGCCTAGCTTTGTGACCTTGGCAAATCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000429480.2 ENST00000441724.1 ENST00000650463.1 |
||
| CDS CAA 90 bp | CCCAAGCATGGAGGGCTGGGTGCACAGTGGGTCTGTTTGATCAGATaGCTTTCCTCTGTGGCGGGAAAGCAGGTCCCTGCATGGGGTCTG | + |
|
Preference number: 6 (lower is better) Translates to: PKHGGLGAQWVCLIR*LSSVAGKQVPAWGL Trigger: CAGACCCCATGCAGGGACCTGCTTTCCCGCCACAGAGGAAAGCAATCTGATCAAACAGACCCACTGTGCACCCAGCCCTCCATGCTTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000429480.2 ENST00000650463.1 |
||
| CDS TCA 72 bp | CTGGGCCCTGACAGATTCGGCAACTCCAGCAACTTCTaGAAATTCTCCTTCCCTGGAGTCCGGCCCCACCTG | + |
|
Preference number: 6 (lower is better) Translates to: LGPDRFGNSSNF*KFSFPGVRPHL Trigger: CAGGTGGGGCCGGACTCCAGGGAAGGAGAATTTTCAGAAGTTGCTGGAGTTGCCGAATCTGTCAGGGCCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000429480.2 ENST00000650463.1 |
||
| CDS GCA 72 bp | CAGATTGCTTTCCTCTGTGGCGGGAAAGCAGGTCCCTaGATGGGGTCTGCGTGTTTCTGTGCATCTCCGTGT | + |
|
Preference number: 6 (lower is better) Translates to: QIAFLCGGKAGP*MGSACFCASPC Trigger: ACACGGAGATGCACAGAAACACGCAGACCCCATGCAGGGACCTGCTTTCCCGCCACAGAGGAAAGCAATCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000429480.2 ENST00000650463.1 |
||
| CDS CAA 72 bp | GCTTCTCTTGGGTTCCTTTCAGATAGCCATCCGAGCTaGTTTCCTGGGGTTTGTGTTCGGCTGCGGCACGCT | + |
|
Preference number: 6 (lower is better) Translates to: ASLGFLSDSHPS*FPGVCVRLRHA Trigger: AGCGTGCCGCAGCCGAACACAAACCCCAGGAAACAAGCTCGGATGGCTATCTGAAAGGAACCCAAGAGAAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650463.1 |
||
| CDS CCA 72 bp | GAAGGCTGTTCAGGGTTCTCTGGAAACGAAGTCTCCTaGCTTCCCCCTAGTTGCTCACATTTCAGCCCTTGT | + |
|
Preference number: 6 (lower is better) Translates to: EGCSGFSGNEVS*LPPSCSHFSPC Trigger: ACAAGGGCTGAAATGTGAGCAACTAGGGGGAAGCCAGGAGACTTCGTTTCCAGAGAACCCTGAACAGCCTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000650463.1 |
||
| CDS TCA 72 bp | GCAGCCCAGATCTGTACTCTGAGGACTGTGAATGACTaGGCTTCTCTTGGGTTCCTTTCAGATAGCCATCCG | + |
|
Preference number: 6 (lower is better) Translates to: AAQICTLRTVND*ASLGFLSDSHP Trigger: CGGATGGCTATCTGAAAGGAACCCAAGAGAAGCTCAGTCATTCACAGTCCTCAGAGTACAGATCTGGGCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650463.1 |
||
| CDS GCA 72 bp | TTCTCTGGAAACGAAGTCTCCTGGCTTCCCCCTAGTTaGTCACATTTCAGCCCTTGTGATTTCGTGCCTGTG | + |
|
Preference number: 6 (lower is better) Translates to: FSGNEVSWLPPS*SHFSPCDFVPV Trigger: CACAGGCACGAAATCACAAGGGCTGAAATGTGAGCAACTAGGGGGAAGCCAGGAGACTTCGTTTCCAGAGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000650463.1 |
||
| CDS CCA 72 bp | CTCCAGTCTGGTTACATATTACTCTACAACCCCGAGTaGCAACAGTCCCTGGGGGTAAATCAGGGCTGTCAT | + |
|
Preference number: 6 (lower is better) Translates to: LQSGYILLYNPE*QQSLGVNQGCH Trigger: ATGACAGCCCTGATTTACCCCCAGGGACTGTTGCCACTCGGGGTTGTAGAGTAATATGTAACCAGACTGGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000429480.2 ENST00000650463.1 |
||
| CDS CCA 72 bp | GGGCAGAGGAGAGAGCATTGCTGTGGTTCTCCAGTCTaGTTACATATTACTCTACAACCCCGAGTGGCAACA | + |
|
Preference number: 6 (lower is better) Translates to: GQRREHCCGSPV*LHITLQPRVAT Trigger: TGTTGCCACTCGGGGTTGTAGAGTAATATGTAACCAGACTGGAGAACCACAGCAATGCTCTCTCCTCTGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000429480.2 ENST00000650463.1 |
||
| CDS TCA 72 bp | TTTCTCCTCCATCACTGCTCTGTGAACCCTGGGCCCTaGCAGATTCGGCAACTCCAGCAACTTCTGAAAATT | + |
|
Preference number: 6 (lower is better) Translates to: FLLHHCSVNPGP*QIRQLQQLLKI Trigger: AATTTTCAGAAGTTGCTGGAGTTGCCGAATCTGTCAGGGCCCAGGGTTCACAGAGCAGTGATGGAGGAGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000429480.2 ENST00000650463.1 |
||
| CDS CCA 72 bp | AGAATTCCTTCGGAAATACTGGTTTTCAGGCGAGGGTaGACAGATCAGAGGGTCTGTAGCGGCATTTCCTCA | + |
|
Preference number: 6 (lower is better) Translates to: RIPSEILVFRRG*TDQRVCSGISS Trigger: TGAGGAAATGCCGCTACAGACCCTCTGATCTGTCCACCCTCGCCTGAAAACCAGTATTTCCGAAGGAATTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650463.1 |
||