Pregenerated sensors for LINC00334 (Homo sapiens)
Ensembl gene IDs: ENSG00000182586Ensembl transcript IDs: ENST00000328344.2, ENST00000584169.5, ENST00000638500.1, ENST00000660971.1, ENST00000665973.1, ENST00000670852.1, ENST00000670960.1
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGGGCCGGTGGGACCTGGCCGCGTGGGCAGAGTGAGGCCAGCAGGTaGATGACCCAGGACCGCGGGAGGGGTGGGCCCGGGAAGACCGTG | + |
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Preference number: 5 (lower is better) Translates to: GAGGTWPRGQSEASR*MTQDRGRGGPGKTV Trigger: CACGGTCTTCCCGGGCCCACCCCTCCCGCGGTCCTGGGTCATCCACCTGCTGGCCTCACTCTGCCCACGCGGCCAGGTCCCACCGGCCCC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000665973.1 |
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| CDS GCA 90 bp | TCCCGCGGGAAGCGCGTGGGCGGCCTCGGCTGTTCCAGGTGGAGCTaGGCCCTTCGCAAACAGCCGGCTTTGCGGACCCTGCAGCCGCCC | + |
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Preference number: 5 (lower is better) Translates to: SRGKRVGGLGCSRWS*ALRKQPALRTLQPP Trigger: GGGCGGCTGCAGGGTCCGCAAAGCCGGCTGTTTGCGAAGGGCGCAGCTCCACCTGGAACAGCCGAGGCCGCCCACGCGCTTCCCGCGGGA 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670960.1 |
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| CDS TCA 90 bp | TCTGTTGAGCTCAGGGGCCGGTGGGACCTGGCCGCGTGGGCAGAGTaGGGCCAGCAGGTGGATGACCCAGGACCGCGGGAGGGGTGGGCC | + |
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Preference number: 5 (lower is better) Translates to: SVELRGRWDLAAWAE*GQQVDDPGPREGWA Trigger: GGCCCACCCCTCCCGCGGTCCTGGGTCATCCACCTGCTGGCCTCACTCTGCCCACGCGGCCAGGTCCCACCGGCCCCTGAGCTCAACAGA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000665973.1 |
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| CDS TCA 90 bp | AAAGGCATCCCGTGGTGCCTGAGACAACAGCCGTGGAGGCTGCTCTaGTCCCGCGGGAAGCGCGTGGGCGGCCTCGGCTGTTCCAGGTGG | + |
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Preference number: 5 (lower is better) Translates to: KGIPWCLRQQPWRLL*SRGKRVGGLGCSRW Trigger: CCACCTGGAACAGCCGAGGCCGCCCACGCGCTTCCCGCGGGATCAGAGCAGCCTCCACGGCTGTTGTCTCAGGCACCACGGGATGCCTTT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670960.1 |
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| CDS CCA 90 bp | CAGGGCCCTCCAGCGGCTCCTCATCACCCGGAGGACCCATGTCTCTaGAACACAGCTCAACCTTGCGGGAACAGGACCACCGGCCAGTGT | + |
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Preference number: 5 (lower is better) Translates to: QGPPAAPHHPEDPCL*NTAQPCGNRTTGQC Trigger: ACACTGGCCGGTGGTCCTGTTCCCGCAAGGTTGAGCTGTGTTCCAGAGACATGGGTCCTCCGGGTGATGAGGAGCCGCTGGAGGGCCCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000328344.2 ENST00000638500.1 ENST00000660971.1 ENST00000665973.1 ENST00000670852.1 ENST00000670960.1 |
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| CDS GCA 90 bp | TTTGAGAAACCGGCCAGCACGGACGGGGCGTTAATCATTAGCACGTaGAGCTCAGGGCCCTCCAGCGGCTCCTCATCACCCGGAGGACCC | + |
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Preference number: 5 (lower is better) Translates to: FEKPASTDGALIIST*SSGPSSGSSSPGGP Trigger: GGGTCCTCCGGGTGATGAGGAGCCGCTGGAGGGCCCTGAGCTGCACGTGCTAATGATTAACGCCCCGTCCGTGCTGGCCGGTTTCTCAAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000328344.2 ENST00000638500.1 ENST00000660971.1 ENST00000665973.1 ENST00000670852.1 ENST00000670960.1 |
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| CDS TCA 90 bp | GCCACCTGGGACCTCTGGCAGTTACCCTCGAGTCCTCGCGGTGACTaGGACCCCCAGGGCAGGATCCGTCTCCAGTTTAGGAAAAGCTCT | + |
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Preference number: 5 (lower is better) Translates to: ATWDLWQLPSSPRGD*DPQGRIRLQFRKSS Trigger: AGAGCTTTTCCTAAACTGGAGACGGATCCTGCCCTGGGGGTCTCAGTCACCGCGAGGACTCGAGGGTAACTGCCAGAGGTCCCAGGTGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000328344.2 |
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| CDS GCA 90 bp | CCTCATCACCCGGAGGACCCATGTCTCTGGAACACAGCTCAACCTTaGGGGAACAGGACCACCGGCCAGTGTGTGCAGACTGTGTGCAGA | + |
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Preference number: 5 (lower is better) Translates to: PHHPEDPCLWNTAQP*GNRTTGQCVQTVCR Trigger: TCTGCACACAGTCTGCACACACTGGCCGGTGGTCCTGTTCCCGCAAGGTTGAGCTGTGTTCCAGAGACATGGGTCCTCCGGGTGATGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000328344.2 ENST00000638500.1 ENST00000660971.1 ENST00000665973.1 ENST00000670852.1 ENST00000670960.1 |
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| CDS TCA 90 bp | GTGGCTTCGTTACAGCTACAGACTCTCATGGTCACTGGCTTCCTGTaGAGCTGGAGCTTCTGCCACGTTGGCCTGTCAGCCGTGCAGCAT | + |
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Preference number: 5 (lower is better) Translates to: VASLQLQTLMVTGFL*SWSFCHVGLSAVQH Trigger: ATGCTGCACGGCTGACAGGCCAACGTGGCAGAAGCTCCAGCTTCACAGGAAGCCAGTGACCATGAGAGTCTGTAGCTGTAACGAAGCCAC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000584169.5 |
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| CDS CCA 90 bp | CCACAGCTCTGTGGCTTCGTTACAGCTACAGACTCTCATGGTCACTaGCTTCCTGTGAAGCTGGAGCTTCTGCCACGTTGGCCTGTCAGC | + |
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Preference number: 5 (lower is better) Translates to: PQLCGFVTATDSHGH*LPVKLELLPRWPVS Trigger: GCTGACAGGCCAACGTGGCAGAAGCTCCAGCTTCACAGGAAGCCAGTGACCATGAGAGTCTGTAGCTGTAACGAAGCCACAGAGCTGTGG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000584169.5 |
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| CDS CCA 90 bp | GACTGCAAATCTCCCGCCTGCCTCACGGCTCCCTCCTGTCTGAGATaGCAGAAGGTTCTAGAGTCTCAGAGAAGGCCTTGTCATTGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: DCKSPACLTAPSCLR*QKVLESQRRPCHCC Trigger: GCAGCAATGACAAGGCCTTCTCTGAGACTCTAGAACCTTCTGCCATCTCAGACAGGAGGGAGCCGTGAGGCAGGCGGGAGATTTGCAGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670960.1 |
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| CDS GCA 90 bp | AGTTTTGCTATCTGCCCGTCCTTTGCTGACTGCAAATCTCCCGCCTaGCTCACGGCTCCCTCCTGTCTGAGATGGCAGAAGGTTCTAGAG | + |
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Preference number: 5 (lower is better) Translates to: SFAICPSFADCKSPA*LTAPSCLRWQKVLE Trigger: CTCTAGAACCTTCTGCCATCTCAGACAGGAGGGAGCCGTGAGGCAGGCGGGAGATTTGCAGTCAGCAAAGGACGGGCAGATAGCAAAACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670960.1 |
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| CDS CCA 90 bp | AAGAAAGCCACAGCTCTGTGGCTTCGTTACAGCTACAGACTCTCATaGTCACTGGCTTCCTGTGAAGCTGGAGCTTCTGCCACGTTGGCC | + |
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Preference number: 5 (lower is better) Translates to: KKATALWLRYSYRLS*SLASCEAGASATLA Trigger: GGCCAACGTGGCAGAAGCTCCAGCTTCACAGGAAGCCAGTGACCATGAGAGTCTGTAGCTGTAACGAAGCCACAGAGCTGTGGCTTTCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000584169.5 |
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| CDS TCA 90 bp | TGGGCAGAAACCCTTAATTACAAACCCGTGCTGATTGTCAGTTGGTaGGGATGCTCCCCGTGGGATGTGACTTCAGCTGTGTGTCCGAGC | + |
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Preference number: 5 (lower is better) Translates to: WAETLNYKPVLIVSW*GCSPWDVTSAVCPS Trigger: GCTCGGACACACAGCTGAAGTCACATCCCACGGGGAGCATCCTCACCAACTGACAATCAGCACGGGTTTGTAATTAAGGGTTTCTGCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000638500.1 ENST00000660971.1 ENST00000665973.1 ENST00000670960.1 |
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| CDS TCA 90 bp | ACATCTGGGTTCTTTCAGGACCGATTGAGGCTTTCCCACAGCTATTaGAACGAAGAAAGGCATCCCGTGGTGCCTGAGACAACAGCCGTG | + |
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Preference number: 5 (lower is better) Translates to: TSGFFQDRLRLSHSY*NEERHPVVPETTAV Trigger: CACGGCTGTTGTCTCAGGCACCACGGGATGCCTTTCTTCGTTTCAATAGCTGTGGGAAAGCCTCAATCGGTCCTGAAAGAACCCAGATGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670960.1 |
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| CDS GCA 90 bp | AGATGGCAGAAGGTTCTAGAGTCTCAGAGAAGGCCTTGTCATTGCTaGACATCTGGGTTCTTTCAGGACCGATTGAGGCTTTCCCACAGC | + |
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Preference number: 5 (lower is better) Translates to: RWQKVLESQRRPCHC*TSGFFQDRLRLSHS Trigger: GCTGTGGGAAAGCCTCAATCGGTCCTGAAAGAACCCAGATGTGCAGCAATGACAAGGCCTTCTCTGAGACTCTAGAACCTTCTGCCATCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670960.1 |
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| CDS GCA 90 bp | CTGAGATGGCAGAAGGTTCTAGAGTCTCAGAGAAGGCCTTGTCATTaGTGCACATCTGGGTTCTTTCAGGACCGATTGAGGCTTTCCCAC | + |
|
Preference number: 5 (lower is better) Translates to: LRWQKVLESQRRPCH*CTSGFFQDRLRLSH Trigger: GTGGGAAAGCCTCAATCGGTCCTGAAAGAACCCAGATGTGCAGCAATGACAAGGCCTTCTCTGAGACTCTAGAACCTTCTGCCATCTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670960.1 |
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| CDS CCA 90 bp | GAAGGTTCTAGAGTCTCAGAGAAGGCCTTGTCATTGCTGCACATCTaGGTTCTTTCAGGACCGATTGAGGCTTTCCCACAGCTATTGAAA | + |
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Preference number: 5 (lower is better) Translates to: EGSRVSEKALSLLHI*VLSGPIEAFPQLLK Trigger: TTTCAATAGCTGTGGGAAAGCCTCAATCGGTCCTGAAAGAACCCAGATGTGCAGCAATGACAAGGCCTTCTCTGAGACTCTAGAACCTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670960.1 |
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| CDS CCA 72 bp | GGCCAGCAGGTGGATGACCCAGGACCGCGGGAGGGGTaGGCCCGGGAAGACCGTGGAGAGGGCCCTGGGTGT | + |
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Preference number: 6 (lower is better) Translates to: GQQVDDPGPREG*AREDRGEGPGC Trigger: ACACCCAGGGCCCTCTCCACGGTCTTCCCGGGCCCACCCCTCCCGCGGTCCTGGGTCATCCACCTGCTGGCC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665973.1 |
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| CDS CCA 72 bp | CGCGGGAAGCGCGTGGGCGGCCTCGGCTGTTCCAGGTaGAGCTGCGCCCTTCGCAAACAGCCGGCTTTGCGG | + |
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Preference number: 6 (lower is better) Translates to: RGKRVGGLGCSR*SCALRKQPALR Trigger: CCGCAAAGCCGGCTGTTTGCGAAGGGCGCAGCTCCACCTGGAACAGCCGAGGCCGCCCACGCGCTTCCCGCG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670960.1 |
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| CDS TCA 72 bp | CCGTGGTGCCTGAGACAACAGCCGTGGAGGCTGCTCTaGTCCCGCGGGAAGCGCGTGGGCGGCCTCGGCTGT | + |
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Preference number: 6 (lower is better) Translates to: PWCLRQQPWRLL*SRGKRVGGLGC Trigger: ACAGCCGAGGCCGCCCACGCGCTTCCCGCGGGATCAGAGCAGCCTCCACGGCTGTTGTCTCAGGCACCACGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670960.1 |
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| CDS GCA 72 bp | AAGCGCGTGGGCGGCCTCGGCTGTTCCAGGTGGAGCTaGGCCCTTCGCAAACAGCCGGCTTTGCGGACCCTG | + |
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Preference number: 6 (lower is better) Translates to: KRVGGLGCSRWS*ALRKQPALRTL Trigger: CAGGGTCCGCAAAGCCGGCTGTTTGCGAAGGGCGCAGCTCCACCTGGAACAGCCGAGGCCGCCCACGCGCTT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670960.1 |
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| CDS TCA 72 bp | CTGGGACCTCTGGCAGTTACCCTCGAGTCCTCGCGGTaGCTGAGACCCCCAGGGCAGGATCCGTCTCCAGTT | + |
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Preference number: 6 (lower is better) Translates to: LGPLAVTLESSR*LRPPGQDPSPV Trigger: AACTGGAGACGGATCCTGCCCTGGGGGTCTCAGTCACCGCGAGGACTCGAGGGTAACTGCCAGAGGTCCCAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000328344.2 |
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| CDS CCA 72 bp | CACTGGCTTCCTGTGAAGCTGGAGCTTCTGCCACGTTaGCCTGTCAGCCGTGCAGCATCTGGGGGTCCCCCT | + |
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Preference number: 6 (lower is better) Translates to: HWLPVKLELLPR*PVSRAASGGPP Trigger: AGGGGGACCCCCAGATGCTGCACGGCTGACAGGCCAACGTGGCAGAAGCTCCAGCTTCACAGGAAGCCAGTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000584169.5 |
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| CDS CAA 72 bp | TCACTGGCTTCCTGTGAAGCTGGAGCTTCTGCCACGTaGGCCTGTCAGCCGTGCAGCATCTGGGGGTCCCCC | + |
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Preference number: 6 (lower is better) Translates to: SLASCEAGASAT*ACQPCSIWGSP Trigger: GGGGGACCCCCAGATGCTGCACGGCTGACAGGCCAACGTGGCAGAAGCTCCAGCTTCACAGGAAGCCAGTGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000584169.5 |
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| CDS TCA 72 bp | GACCTCTGGCAGTTACCCTCGAGTCCTCGCGGTGACTaGGACCCCCAGGGCAGGATCCGTCTCCAGTTTAGG | + |
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Preference number: 6 (lower is better) Translates to: DLWQLPSSPRGD*DPQGRIRLQFR Trigger: CCTAAACTGGAGACGGATCCTGCCCTGGGGGTCTCAGTCACCGCGAGGACTCGAGGGTAACTGCCAGAGGTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000328344.2 |
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| CDS CCA 72 bp | CCAGCGGCTCCTCATCACCCGGAGGACCCATGTCTCTaGAACACAGCTCAACCTTGCGGGAACAGGACCACC | + |
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Preference number: 6 (lower is better) Translates to: PAAPHHPEDPCL*NTAQPCGNRTT Trigger: GGTGGTCCTGTTCCCGCAAGGTTGAGCTGTGTTCCAGAGACATGGGTCCTCCGGGTGATGAGGAGCCGCTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000328344.2 ENST00000638500.1 ENST00000660971.1 ENST00000665973.1 ENST00000670852.1 ENST00000670960.1 |
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| CDS CAA 72 bp | CCCGGAGGACCCATGTCTCTGGAACACAGCTCAACCTaGCGGGAACAGGACCACCGGCCAGTGTGTGCAGAC | + |
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Preference number: 6 (lower is better) Translates to: PGGPMSLEHSST*REQDHRPVCAD Trigger: GTCTGCACACACTGGCCGGTGGTCCTGTTCCCGCAAGGTTGAGCTGTGTTCCAGAGACATGGGTCCTCCGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000328344.2 ENST00000638500.1 ENST00000660971.1 ENST00000665973.1 ENST00000670852.1 ENST00000670960.1 |
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| CDS GCA 72 bp | CCGGAGGACCCATGTCTCTGGAACACAGCTCAACCTTaGGGGAACAGGACCACCGGCCAGTGTGTGCAGACT | + |
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Preference number: 6 (lower is better) Translates to: PEDPCLWNTAQP*GNRTTGQCVQT Trigger: AGTCTGCACACACTGGCCGGTGGTCCTGTTCCCGCAAGGTTGAGCTGTGTTCCAGAGACATGGGTCCTCCGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000328344.2 ENST00000638500.1 ENST00000660971.1 ENST00000665973.1 ENST00000670852.1 ENST00000670960.1 |
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| CDS CCA 72 bp | CCCAAAGAAGGGGCGCGCACAGGGGCCTCTGTGTTGTaGGGACTTCACCCGATTCCAGAGAAAGCCGCTCAA | + |
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Preference number: 6 (lower is better) Translates to: PKEGARTGASVL*GLHPIPEKAAQ Trigger: TTGAGCGGCTTTCTCTGGAATCGGGTGAAGTCCCCACAACACAGAGGCCCCTGTGCGCGCCCCTTCTTTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000638500.1 ENST00000660971.1 ENST00000665973.1 ENST00000670852.1 ENST00000670960.1 |
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| CDS CAA 90 bp | TCCTCATCACCCGGAGGACCCATGTCTCTGGAACACAGCTCAACCTaGCGGGAACAGGACCACCGGCCAGTGTGTGCAGACTGTGTGCAG | + |
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Preference number: 6 (lower is better) Translates to: SSSPGGPMSLEHSST*REQDHRPVCADCVQ Trigger: CTGCACACAGTCTGCACACACTGGCCGGTGGTCCTGTTCCCGCAAGGTTGAGCTGTGTTCCAGAGACATGGGTCCTCCGGGTGATGAGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000328344.2 ENST00000638500.1 ENST00000660971.1 ENST00000665973.1 ENST00000670852.1 ENST00000670960.1 |
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| CDS TCA 72 bp | CAGCTATTGAAACGAAGAAAGGCATCCCGTGGTGCCTaGGACAACAGCCGTGGAGGCTGCTCTGATCCCGCG | + |
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Preference number: 6 (lower is better) Translates to: QLLKRRKASRGA*DNSRGGCSDPA Trigger: CGCGGGATCAGAGCAGCCTCCACGGCTGTTGTCTCAGGCACCACGGGATGCCTTTCTTCGTTTCAATAGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670960.1 |
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| CDS GCA 72 bp | GTAAGCAGGGAAAACGTCCTCCAAGCTGAAAGCCTTTaGCGGCACAGAGGCAGCAACTGCCCCCAGATTCCC | + |
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Preference number: 6 (lower is better) Translates to: VSRENVLQAESL*RHRGSNCPQIP Trigger: GGGAATCTGGGGGCAGTTGCTGCCTCTGTGCCGGCAAAGGCTTTCAGCTTGGAGGACGTTTTCCCTGCTTAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENST00000638500.1 ENST00000660971.1 ENST00000665973.1 ENST00000670852.1 ENST00000670960.1 |
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| CDS CCA 72 bp | TCTCCCGCCTGCCTCACGGCTCCCTCCTGTCTGAGATaGCAGAAGGTTCTAGAGTCTCAGAGAAGGCCTTGT | + |
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Preference number: 6 (lower is better) Translates to: SPACLTAPSCLR*QKVLESQRRPC Trigger: ACAAGGCCTTCTCTGAGACTCTAGAACCTTCTGCCATCTCAGACAGGAGGGAGCCGTGAGGCAGGCGGGAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670960.1 |
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| CDS CAA 90 bp | CCCGCGGCCGCCCAGCTCACCTCAGAAAGCCTCAGTGATTTCCTTTaGTCTCTCAGTACAAATGATGTCCGGCTGTGCGCAATCGTCAGG | + |
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Preference number: 6 (lower is better) Translates to: PAAAQLTSESLSDFL*SLSTNDVRLCAIVR Trigger: CCTGACGATTGCGCACAGCCGGACATCATTTGTACTGAGAGACAAAAGGAAATCACTGAGGCTTTCTGAGGTGAGCTGGGCGGCCGCGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000638500.1 ENST00000660971.1 ENST00000665973.1 ENST00000670960.1 |
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| CDS TCA 72 bp | ATGATGTCCGGCTGTGCGCAATCGTCAGGAGGCATTTaGGAAACCGGCCAGCACGGACGGGGCGTTAATCAT | + |
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Preference number: 6 (lower is better) Translates to: MMSGCAQSSGGI*ETGQHGRGVNH Trigger: ATGATTAACGCCCCGTCCGTGCTGGCCGGTTTCTCAAATGCCTCCTGACGATTGCGCACAGCCGGACATCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000328344.2 ENST00000638500.1 ENST00000660971.1 ENST00000665973.1 ENST00000670852.1 ENST00000670960.1 |
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| CDS TCA 72 bp | CCGTTACCCTTTGTGACTTTCCACCATGGTGTCGTGTaGCCCTCAGTCAGGTTGGTGGGGGCTGAGTCCTCA | + |
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Preference number: 6 (lower is better) Translates to: PLPFVTFHHGVV*PSVRLVGAESS Trigger: TGAGGACTCAGCCCCCACCAACCTGACTGAGGGTCACACGACACCATGGTGGAAAGTCACAAAGGGTAACGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000638500.1 ENST00000660971.1 ENST00000665973.1 ENST00000670852.1 ENST00000670960.1 |
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| CDS TCA 72 bp | CACTTAGTTTTGCTATCCTCGAGTCCTCGCGGTGACTaGGACCCCCAGGGCAGGATCCGTCTCCAGTTTAGG | + |
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Preference number: 6 (lower is better) Translates to: HLVLLSSSPRGD*DPQGRIRLQFR Trigger: CCTAAACTGGAGACGGATCCTGCCCTGGGGGTCTCAGTCACCGCGAGGACTCGAGGATAGCAAAACTAAGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000660971.1 ENST00000670852.1 |
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| CDS TCA 72 bp | TTGACACTTAGTTTTGCTATCCTCGAGTCCTCGCGGTaGCTGAGACCCCCAGGGCAGGATCCGTCTCCAGTT | + |
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Preference number: 6 (lower is better) Translates to: LTLSFAILESSR*LRPPGQDPSPV Trigger: AACTGGAGACGGATCCTGCCCTGGGGGTCTCAGTCACCGCGAGGACTCGAGGATAGCAAAACTAAGTGTCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000660971.1 ENST00000670852.1 |
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| CDS GCA 72 bp | ACACTTAGTTTTGCTATCTGCCCGTCCTTTGCTGACTaGAAATCTCCCGCCTGCCTCACGGCTCCCTCCTGT | + |
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Preference number: 6 (lower is better) Translates to: TLSFAICPSFAD*KSPACLTAPSC Trigger: ACAGGAGGGAGCCGTGAGGCAGGCGGGAGATTTGCAGTCAGCAAAGGACGGGCAGATAGCAAAACTAAGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670960.1 |
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| CDS CAA 72 bp | ACCCGATTCCAGAGAAAGCCGCTCAAAGGAGAGATCTaGCTAAGCCCTGCTCCTGACACCAGCTGTGTTCAC | + |
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Preference number: 6 (lower is better) Translates to: TRFQRKPLKGEI*LSPAPDTSCVH Trigger: GTGAACACAGCTGGTGTCAGGAGCAGGGCTTAGCAAGATCTCTCCTTTGAGCGGCTTTCTCTGGAATCGGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000638500.1 ENST00000660971.1 ENST00000665973.1 ENST00000670960.1 |
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| CDS CAA 90 bp | GGGGACTTCACCCGATTCCAGAGAAAGCCGCTCAAAGGAGAGATCTaGCTAAGCCCTGCTCCTGACACCAGCTGTGTTCACGAAGAAAAG | + |
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Preference number: 6 (lower is better) Translates to: GDFTRFQRKPLKGEI*LSPAPDTSCVHEEK Trigger: CTTTTCTTCGTGAACACAGCTGGTGTCAGGAGCAGGGCTTAGCAAGATCTCTCCTTTGAGCGGCTTTCTCTGGAATCGGGTGAAGTCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000638500.1 ENST00000660971.1 ENST00000665973.1 ENST00000670960.1 |
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| CDS CAA 90 bp | AGCCCTGCTCCTGACACCAGCTCAGAAAGCCTCAGTGATTTCCTTTaGTCTCTCAGTACAAATGATGTCCGGCTGTGCGCAATCGTCAGG | + |
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Preference number: 6 (lower is better) Translates to: SPAPDTSSESLSDFL*SLSTNDVRLCAIVR Trigger: CCTGACGATTGCGCACAGCCGGACATCATTTGTACTGAGAGACAAAAGGAAATCACTGAGGCTTTCTGAGCTGGTGTCAGGAGCAGGGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670852.1 |
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| CDS CAA 90 bp | CTCCTGTCTGAGATGGCAGAAGGTTCTAGAGTCTCAGAGAAGGCCTaGTCATTGCTGCACATCTGGGTTCTTTCAGGACCGATTGAGGCT | + |
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Preference number: 6 (lower is better) Translates to: LLSEMAEGSRVSEKA*SLLHIWVLSGPIEA Trigger: AGCCTCAATCGGTCCTGAAAGAACCCAGATGTGCAGCAATGACAAGGCCTTCTCTGAGACTCTAGAACCTTCTGCCATCTCAGACAGGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670960.1 |
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| CDS TCA 72 bp | ACCCTTAATTACAAACCCGTGCTGATTGTCAGTTGGTaGGGATGCTCCCCGTGGGATGTGACTTCAGCTGTG | + |
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Preference number: 6 (lower is better) Translates to: TLNYKPVLIVSW*GCSPWDVTSAV Trigger: CACAGCTGAAGTCACATCCCACGGGGAGCATCCTCACCAACTGACAATCAGCACGGGTTTGTAATTAAGGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000638500.1 ENST00000660971.1 ENST00000665973.1 ENST00000670960.1 |
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| CDS CAA 72 bp | GAGATGGCAGAAGGTTCTAGAGTCTCAGAGAAGGCCTaGTCATTGCTGCACATCTGGGTTCTTTCAGGACCG | + |
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Preference number: 6 (lower is better) Translates to: EMAEGSRVSEKA*SLLHIWVLSGP Trigger: CGGTCCTGAAAGAACCCAGATGTGCAGCAATGACAAGGCCTTCTCTGAGACTCTAGAACCTTCTGCCATCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670960.1 |
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| CDS CAA 90 bp | TCTGAGATGGCAGAAGGTTCTAGAGTCTCAGAGAAGGCCTTGTCATaGCTGCACATCTGGGTTCTTTCAGGACCGATTGAGGCTTTCCCA | + |
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Preference number: 6 (lower is better) Translates to: SEMAEGSRVSEKALS*LHIWVLSGPIEAFP Trigger: TGGGAAAGCCTCAATCGGTCCTGAAAGAACCCAGATGTGCAGCAATGACAAGGCCTTCTCTGAGACTCTAGAACCTTCTGCCATCTCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670960.1 |
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| CDS TCA 72 bp | TTCTTTCAGGACCGATTGAGGCTTTCCCACAGCTATTaGAACGAAGAAAGGCATCCCGTGGTGCCTGAGACA | + |
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Preference number: 6 (lower is better) Translates to: FFQDRLRLSHSY*NEERHPVVPET Trigger: TGTCTCAGGCACCACGGGATGCCTTTCTTCGTTTCAATAGCTGTGGGAAAGCCTCAATCGGTCCTGAAAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670960.1 |
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| CDS GCA 72 bp | CAGAAGGTTCTAGAGTCTCAGAGAAGGCCTTGTCATTaGTGCACATCTGGGTTCTTTCAGGACCGATTGAGG | + |
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Preference number: 6 (lower is better) Translates to: QKVLESQRRPCH*CTSGFFQDRLR Trigger: CCTCAATCGGTCCTGAAAGAACCCAGATGTGCAGCAATGACAAGGCCTTCTCTGAGACTCTAGAACCTTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670960.1 |
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| CDS CAA 72 bp | GCAGAAGGTTCTAGAGTCTCAGAGAAGGCCTTGTCATaGCTGCACATCTGGGTTCTTTCAGGACCGATTGAG | + |
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Preference number: 6 (lower is better) Translates to: AEGSRVSEKALS*LHIWVLSGPIE Trigger: CTCAATCGGTCCTGAAAGAACCCAGATGTGCAGCAATGACAAGGCCTTCTCTGAGACTCTAGAACCTTCTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670960.1 |
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| CDS TCA 72 bp | GTCATTGCTGCACATCTGGGTTCTTTCAGGACCGATTaGGGCTTTCCCACAGCTATTGAAACGAAGAAAGGC | + |
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Preference number: 6 (lower is better) Translates to: VIAAHLGSFRTD*GFPTAIETKKG Trigger: GCCTTTCTTCGTTTCAATAGCTGTGGGAAAGCCTCAATCGGTCCTGAAAGAACCCAGATGTGCAGCAATGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670960.1 |
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| CDS GCA 72 bp | TGGGCTTTGTCCCCTGCTTCTAGCAAGGAATGTGTCTaGAGAGATTATTTTCTTACGATAATCAGTCTGATG | + |
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Preference number: 6 (lower is better) Translates to: WALSPASSKECV*RDYFLTIISLM Trigger: CATCAGACTGATTATCGTAAGAAAATAATCTCTGCAGACACATTCCTTGCTAGAAGCAGGGGACAAAGCCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000584169.5 |
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