RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC00332 (Homo sapiens)

Ensembl gene IDs: ENSG00000230710

Ensembl transcript IDs: ENST00000455241.2, ENST00000662208.1

Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GCCTCCTCCCTTCCCCTCCTGTGGCTTCAGTGGGCTTGGGGCATCTaGAGGGCTTCCCGCCGTCTCCTCGTCTCAGCGGCAACTTCTCCT +
Preference number: 5 (lower is better)
Translates to: ASSLPLLWLQWAWGI*RASRRLLVSAATSP
Trigger: AGGAGAAGTTGCCGCTGAGACGAGGAGACGGCGGGAAGCCCTGCAGATGCCCCAAGCCCACTGAAGCCACAGGAGGGGAAGGGAGGAGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000455241.2
CDS CCA 90 bp CTCTATGGGAGGTCTCTATGTGCAGGCTTCCTTGTGACAGGGAGGTaGCTACAGATGGTCTCCCTGCTCAGCTGTCAAGTCTCTTTCAAG +
Preference number: 5 (lower is better)
Translates to: LYGRSLCAGFLVTGR*LQMVSLLSCQVSFK
Trigger: CTTGAAAGAGACTTGACAGCTGAGCAGGGAGACCATCTGTAGCCACCTCCCTGTCACAAGGAAGCCTGCACATAGAGACCTCCCATAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000455241.2
CDS GCA 90 bp GCCACACATGATTTCACGTCGTCTGTACATTCTTCGGCAGGAACCTaGTCCTTTTACTTCCAGTGGACACAGAGCACTTCAGCTATGGGC +
Preference number: 5 (lower is better)
Translates to: ATHDFTSSVHSSAGT*SFYFQWTQSTSAMG
Trigger: GCCCATAGCTGAAGTGCTCTGTGTCCACTGGAAGTAAAAGGAGCAGGTTCCTGCCGAAGAATGTACAGACGACGTGAAATCATGTGTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000662208.1
CDS TCA 90 bp GAGAATGGCATTTGGGTACCTGTTATATTTCTAGTTGGCCATCCCTaGGTCACCAGGGTATGCCAAAGCATCACAGGGCCTTTTATTGTG +
Preference number: 5 (lower is better)
Translates to: ENGIWVPVIFLVGHP*VTRVCQSITGPFIV
Trigger: CACAATAAAAGGCCCTGTGATGCTTTGGCATACCCTGGTGACTCAGGGATGGCCAACTAGAAATATAACAGGTACCCAAATGCCATTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000455241.2
CDS TCA 90 bp GTAAATGCTGAGAGGGGTGGGTGCAGTTGCCTAGGCACAAATATCTaGATAGAGCAGATATGGATGAGTGGTTCAGGGGAGGAAATATTA +
Preference number: 5 (lower is better)
Translates to: VNAERGGCSCLGTNI*IEQIWMSGSGEEIL
Trigger: TAATATTTCCTCCCCTGAACCACTCATCCATATCTGCTCTATTCAGATATTTGTGCCTAGGCAACTGCACCCACCCCTCTCAGCATTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000662208.1
CDS CCA 90 bp CAGTTGCCTAGGCACAAATATCTGAATAGAGCAGATATGGATGAGTaGTTCAGGGGAGGAAATATTATCTGCCTTCTTTTCATTCTGCTT +
Preference number: 5 (lower is better)
Translates to: QLPRHKYLNRADMDE*FRGGNIICLLFILL
Trigger: AAGCAGAATGAAAAGAAGGCAGATAATATTTCCTCCCCTGAACCACTCATCCATATCTGCTCTATTCAGATATTTGTGCCTAGGCAACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000662208.1
CDS CAA 90 bp AGGAGGGAGTCTGCACTAGAATCCAACCATGCTGGCACCCTGATCTaGGACCGCCAGTCTCCAGACCGGGGGCTGCGCTCCCTACACGGA +
Preference number: 6 (lower is better)
Translates to: RRESALESNHAGTLI*DRQSPDRGLRSLHG
Trigger: TCCGTGTAGGGAGCGCAGCCCCCGGTCTGGAGACTGGCGGTCCAAGATCAGGGTGCCAGCATGGTTGGATTCTAGTGCAGACTCCCTCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000455241.2
CDS CAA 72 bp TCTGCACTAGAATCCAACCATGCTGGCACCCTGATCTaGGACCGCCAGTCTCCAGACCGGGGGCTGCGCTCC +
Preference number: 6 (lower is better)
Translates to: SALESNHAGTLI*DRQSPDRGLRS
Trigger: GGAGCGCAGCCCCCGGTCTGGAGACTGGCGGTCCAAGATCAGGGTGCCAGCATGGTTGGATTCTAGTGCAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000455241.2
CDS GCA 72 bp AGGAGTCCTTTCTGCCGCCAGGAACACGCCAGGCCGTaGTGGGATCGCATTTTCCTTGCAAGGGCAGTGACC +
Preference number: 6 (lower is better)
Translates to: RSPFCRQEHARP*WDRIFLARAVT
Trigger: GGTCACTGCCCTTGCAAGGAAAATGCGATCCCAGCACGGCCTGGCGTGTTCCTGGCGGCAGAAAGGACTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000455241.2
CDS GCA 72 bp AGAACCGGTCGCCGTTTTCTCCTTAAGAATCCTTTCTaGCGCCAGGAACACGCCAGGCCGTGCTGGGATCGC +
Preference number: 6 (lower is better)
Translates to: RTGRRFLLKNPF*RQEHARPCWDR
Trigger: GCGATCCCAGCACGGCCTGGCGTGTTCCTGGCGGCAGAAAGGATTCTTAAGGAGAAAACGGCGACCGGTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000662208.1
CDS CCA 72 bp AGTCCTTTCTGCCGCCAGGAACACGCCAGGCCGTGCTaGGATCGCATTTTCCTTGCAAGGGCAGTGACCCTT +
Preference number: 6 (lower is better)
Translates to: SPFCRQEHARPC*DRIFLARAVTL
Trigger: AAGGGTCACTGCCCTTGCAAGGAAAATGCGATCCCAGCACGGCCTGGCGTGTTCCTGGCGGCAGAAAGGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000455241.2
CDS CCA 72 bp AGTCAGGAGGGAGTCTGCACTAGAATCCAACCATGCTaGCACCCTGATCTTGGACCGCCAGTCTCCAGACCG +
Preference number: 6 (lower is better)
Translates to: SQEGVCTRIQPC*HPDLGPPVSRP
Trigger: CGGTCTGGAGACTGGCGGTCCAAGATCAGGGTGCCAGCATGGTTGGATTCTAGTGCAGACTCCCTCCTGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000455241.2
CDS TCA 72 bp TCTGAGAGCTTCCTGGGTTTGCTGACCTCACCCCTGTaGGGAGGAGGATTGGCCCGGCTGCTGAAAACATAC +
Preference number: 6 (lower is better)
Translates to: SESFLGLLTSPL*GGGLARLLKTY
Trigger: GTATGTTTTCAGCAGCCGGGCCAATCCTCCTCCTCACAGGGGTGAGGTCAGCAAACCCAGGAAGCTCTCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000662208.1
CDS CCA 72 bp AGGTCTCTATGTGCAGGCTTCCTTGTGACAGGGAGGTaGCTACAGATGGTCTCCCTGCTCAGCTGTCAAGTC +
Preference number: 6 (lower is better)
Translates to: RSLCAGFLVTGR*LQMVSLLSCQV
Trigger: GACTTGACAGCTGAGCAGGGAGACCATCTGTAGCCACCTCCCTGTCACAAGGAAGCCTGCACATAGAGACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000455241.2
CDS CAA 72 bp CCTTTCCCCCTCCTCCTTGAAGTCAAACGGAAAAAGTaGCTCCTTCCCTTTCCTCGGGAGCCTACTGAGCCT +
Preference number: 6 (lower is better)
Translates to: PFPLLLEVKRKK*LLPFPREPTEP
Trigger: AGGCTCAGTAGGCTCCCGAGGAAAGGGAAGGAGCAACTTTTTCCGTTTGACTTCAAGGAGGAGGGGGAAAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000455241.2
CDS GCA 72 bp CTTTCCCCCTCCTCCTTGAAGTCAAACGGAAAAAGTTaGTCCTTCCCTTTCCTCGGGAGCCTACTGAGCCTT +
Preference number: 6 (lower is better)
Translates to: LSPSSLKSNGKS*SFPFLGSLLSL
Trigger: AAGGCTCAGTAGGCTCCCGAGGAAAGGGAAGGAGCAACTTTTTCCGTTTGACTTCAAGGAGGAGGGGGAAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000455241.2
CDS CCA 72 bp GAGTCGATTGTGCTAGGGCTTGGTTTTGAGGATCTGTaGGTAAATGCTGAGAGGGGTGGGTGCAGTTGCCTA +
Preference number: 6 (lower is better)
Translates to: ESIVLGLGFEDL*VNAERGGCSCL
Trigger: TAGGCAACTGCACCCACCCCTCTCAGCATTTACCCACAGATCCTCAAAACCAAGCCCTAGCACAATCGACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000662208.1
CDS CAA 90 bp ATTCTGTACCCTTTCCCCCTCCTCCTTGAAGTCAAACGGAAAAAGTaGCTCCTTCCCTTTCCTCGGGAGCCTACTGAGCCTTCTCTAGGA +
Preference number: 6 (lower is better)
Translates to: ILYPFPLLLEVKRKK*LLPFPREPTEPSLG
Trigger: TCCTAGAGAAGGCTCAGTAGGCTCCCGAGGAAAGGGAAGGAGCAACTTTTTCCGTTTGACTTCAAGGAGGAGGGGGAAAGGGTACAGAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000455241.2
CDS TCA 72 bp GAGAGGGGTGGGTGCAGTTGCCTAGGCACAAATATCTaGATAGAGCAGATATGGATGAGTGGTTCAGGGGAG +
Preference number: 6 (lower is better)
Translates to: ERGGCSCLGTNI*IEQIWMSGSGE
Trigger: CTCCCCTGAACCACTCATCCATATCTGCTCTATTCAGATATTTGTGCCTAGGCAACTGCACCCACCCCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000662208.1
CDS GCA 72 bp GAAGGAATTCTGCTGCAGCTGAAGTTCATTTCTCCTTaGTTTGTTCCGGGGGACATGGAAAAGAACCGGTCG +
Preference number: 6 (lower is better)
Translates to: EGILLQLKFISP*FVPGDMEKNRS
Trigger: CGACCGGTTCTTTTCCATGTCCCCCGGAACAAAGCAAGGAGAAATGAACTTCAGCTGCAGCAGAATTCCTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000662208.1
CDS TCA 72 bp ATTTGGGTACCTGTTATATTTCTAGTTGGCCATCCCTaGGTCACCAGGGTATGCCAAAGCATCACAGGGCCT +
Preference number: 6 (lower is better)
Translates to: IWVPVIFLVGHP*VTRVCQSITGP
Trigger: AGGCCCTGTGATGCTTTGGCATACCCTGGTGACTCAGGGATGGCCAACTAGAAATATAACAGGTACCCAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000455241.2
CDS GCA 72 bp GATTTCACGTCGTCTGTACATTCTTCGGCAGGAACCTaGTCCTTTTACTTCCAGTGGACACAGAGCACTTCA +
Preference number: 6 (lower is better)
Translates to: DFTSSVHSSAGT*SFYFQWTQSTS
Trigger: TGAAGTGCTCTGTGTCCACTGGAAGTAAAAGGAGCAGGTTCCTGCCGAAGAATGTACAGACGACGTGAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000662208.1
CDS CAA 90 bp CCCTACCAGATTGACAACCAAGGACTATTGTGGTGTTTACATTTCTaGGGTAAGTACAGCTTATCTGCCTCACATGCTGTGGGTGTAGGA +
Preference number: 6 (lower is better)
Translates to: PYQIDNQGLLWCLHF*GKYSLSASHAVGVG
Trigger: TCCTACACCCACAGCATGTGAGGCAGATAAGCTGTACTTACCCAAGAAATGTAAACACCACAATAGTCCTTGGTTGTCAATCTGGTAGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000455241.2
CDS TCA 72 bp ACTGATACCAGGCAGGTCTTCGTGACCCTACCAGATTaGCAACCAAGGACTATTGTGGTGTTTACATTTCTT +
Preference number: 6 (lower is better)
Translates to: TDTRQVFVTLPD*QPRTIVVFTFL
Trigger: AAGAAATGTAAACACCACAATAGTCCTTGGTTGTCAATCTGGTAGGGTCACGAAGACCTGCCTGGTATCAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000455241.2
CDS CAA 72 bp AGAAATAAGCCAACTGAATCGCAAGTGCCATACATTTaGATTCTGTACCCTTTCCCCCTCCTCCTTGAAGTC +
Preference number: 6 (lower is better)
Translates to: RNKPTESQVPYI*ILYPFPLLLEV
Trigger: GACTTCAAGGAGGAGGGGGAAAGGGTACAGAATCAAAATGTATGGCACTTGCGATTCAGTTGGCTTATTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000455241.2
CDS TCA 72 bp AGCTCTCTGCAATTCAGTTTACTCATCTCCATTCGTTaGATCAGCATGTCTCTTGTAACTCTGTTCTTTGAC +
Preference number: 6 (lower is better)
Translates to: SSLQFSLLISIR*ISMSLVTLFFD
Trigger: GTCAAAGAACAGAGTTACAAGAGACATGCTGATTCAACGAATGGAGATGAGTAAACTGAATTGCAGAGAGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000455241.2
CDS CCA 72 bp GATCGACGTGATAGACTGAATCATATCTCCCAAAATTaGTATGTTGAAGTCTTAAGCCCCAGTGTGACTATA +
Preference number: 6 (lower is better)
Translates to: DRRDRLNHISQN*YVEVLSPSVTI
Trigger: TATAGTCACACTGGGGCTTAAGACTTCAACATACCAATTTTGGGAGATATGATTCAGTCTATCACGTCGATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000455241.2
CDS TCA 72 bp TGTGATGTTAGACTGAATGTGATCGACGTGATAGACTaGATCATATCTCCCAAAATTGGTATGTTGAAGTCT +
Preference number: 6 (lower is better)
Translates to: CDVRLNVIDVID*IISPKIGMLKS
Trigger: AGACTTCAACATACCAATTTTGGGAGATATGATTCAGTCTATCACGTCGATCACATTCAGTCTAACATCACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000455241.2
CDS TCA 72 bp CTGCTTTTCTCAGAAATATGTTTCCAGACTTCTCAGTaGGAATGGCATTTGGGTACCTGTTATATTTCTAGT +
Preference number: 6 (lower is better)
Translates to: LLFSEICFQTSQ*EWHLGTCYISS
Trigger: ACTAGAAATATAACAGGTACCCAAATGCCATTCTCACTGAGAAGTCTGGAAACATATTTCTGAGAAAAGCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000455241.2