Pregenerated sensors for LINC00330 (Homo sapiens)
Ensembl gene IDs: ENSG00000235097Ensembl transcript IDs: ENST00000414562.1
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TGTTTGTCTTGTGCTTTGGCTGATTCGACTGCCGGTGGACCTTCATaGATTCTTCCTCTTGTCGTGTGCTCTGGAGACCCTGTCTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: CLSCALADSTAGGPS*ILPLVVCSGDPVCC Trigger: GCAGCAGACAGGGTCTCCAGAGCACACGACAAGAGGAAGAATGCATGAAGGTCCACCGGCAGTCGAATCAGCCAAAGCACAAGACAAACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS CCA 90 bp | GTCACCGTGTCATCAAGGCTGGAGGTGGTGAGAGACAGAGTCAAGTaGTTCTTAAGGGTTTCAGTCCTTGAAGCTCCTTGTTTGCCCTGC | + |
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Preference number: 5 (lower is better) Translates to: VTVSSRLEVVRDRVK*FLRVSVLEAPCLPC Trigger: GCAGGGCAAACAAGGAGCTTCAAGGACTGAAACCCTTAAGAACCACTTGACTCTGTCTCTCACCACCTCCAGCCTTGATGACACGGTGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS GCA 90 bp | CGGGTCCTGTCTTTCAGCTTCTCCAAGTCCAGCGCCAGGTTTTTGTaGAGCTCAAAGCAAAGGGCATCAGTTCTTCTATATGTCACCGTG | + |
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Preference number: 5 (lower is better) Translates to: RVLSFSFSKSSARFL*SSKQRASVLLYVTV Trigger: CACGGTGACATATAGAAGAACTGATGCCCTTTGCTTTGAGCTGCACAAAAACCTGGCGCTGGACTTGGAGAAGCTGAAAGACAGGACCCG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS CCA 90 bp | GTTAGTGTTGCCCACAAGAGAAAAGCCAAGTATCCACAGGATACTTaGATAGCAGGCAGGAGGGAGCAGCCATTTCCAGGCTCTGAGTGT | + |
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Preference number: 5 (lower is better) Translates to: VSVAHKRKAKYPQDT*IAGRREQPFPGSEC Trigger: ACACTCAGAGCCTGGAAATGGCTGCTCCCTCCTGCCTGCTATCCAAGTATCCTGTGGATACTTGGCTTTTCTCTTGTGGGCAACACTAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS TCA 90 bp | AGTCTCTCCCAGGGCCCCACAGATGCAGCCGTTCCAATGAGATTGTaGGGTAAAGTTGCTCGGGGAATTGTTCTGAACTTTCAGAAATGC | + |
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Preference number: 5 (lower is better) Translates to: SLSQGPTDAAVPMRL*GKVARGIVLNFQKC Trigger: GCATTTCTGAAAGTTCAGAACAATTCCCCGAGCAACTTTACCTCACAATCTCATTGGAACGGCTGCATCTGTGGGGCCCTGGGAGAGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS TCA 90 bp | GCCCTGCTTTTTCCTATTTCCTATCCAGCCTTTCTTCCCGACAGCTaGCATCTGACCTTCTGGCTTCCCTTTGGGTTCATCAATGTTCAG | + |
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Preference number: 5 (lower is better) Translates to: ALLFPISYPAFLPDS*HLTFWLPFGFINVQ Trigger: CTGAACATTGATGAACCCAAAGGGAAGCCAGAAGGTCAGATGTCAGCTGTCGGGAAGAAAGGCTGGATAGGAAATAGGAAAAAGCAGGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS TCA 90 bp | GGTGGTGAGAGACAGAGTCAAGTGGTTCTTAAGGGTTTCAGTCCTTaGAGCTCCTTGTTTGCCCTGCTTTTTCCTATTTCCTATCCAGCC | + |
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Preference number: 5 (lower is better) Translates to: GGERQSQVVLKGFSP*SSLFALLFPISYPA Trigger: GGCTGGATAGGAAATAGGAAAAAGCAGGGCAAACAAGGAGCTTCAAGGACTGAAACCCTTAAGAACCACTTGACTCTGTCTCTCACCACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS CCA 90 bp | TTCATCAATGTTCAGGGTATTTATTACCCCCAGATTCTTCAAGGATaGGCCAAGATCAGATTCCAACATCAGATTCCAAGTTCTTCAGCT | + |
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Preference number: 5 (lower is better) Translates to: FINVQGIYYPQILQG*AKIRFQHQIPSSSA Trigger: AGCTGAAGAACTTGGAATCTGATGTTGGAATCTGATCTTGGCCCATCCTTGAAGAATCTGGGGGTAATAAATACCCTGAACATTGATGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS TCA 72 bp | GTCTCTCCCAGGGCCCCACAGATGCAGCCGTTCCAATaGGATTGTGAGGTAAAGTTGCTCGGGGAATTGTTC | + |
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Preference number: 6 (lower is better) Translates to: VSPRAPQMQPFQ*DCEVKLLGELF Trigger: GAACAATTCCCCGAGCAACTTTACCTCACAATCTCATTGGAACGGCTGCATCTGTGGGGCCCTGGGAGAGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS GCA 72 bp | TGTGCTTTGGCTGATTCGACTGCCGGTGGACCTTCATaGATTCTTCCTCTTGTCGTGTGCTCTGGAGACCCT | + |
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Preference number: 6 (lower is better) Translates to: CALADSTAGGPS*ILPLVVCSGDP Trigger: AGGGTCTCCAGAGCACACGACAAGAGGAAGAATGCATGAAGGTCCACCGGCAGTCGAATCAGCCAAAGCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS CAA 72 bp | TGCCCACAAGAGAAAAGCCAAGTATCCACAGGATACTaGGATAGCAGGCAGGAGGGAGCAGCCATTTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: CPQEKSQVSTGY*DSRQEGAAISR Trigger: CCTGGAAATGGCTGCTCCCTCCTGCCTGCTATCCAAGTATCCTGTGGATACTTGGCTTTTCTCTTGTGGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS CAA 90 bp | TGCCGGGTCCTGTCTTTCAGCTTCTCCAAGTCCAGCGCCAGGTTTTaGTGCAGCTCAAAGCAAAGGGCATCAGTTCTTCTATATGTCACC | + |
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Preference number: 6 (lower is better) Translates to: CRVLSFSFSKSSARF*CSSKQRASVLLYVT Trigger: GGTGACATATAGAAGAACTGATGCCCTTTGCTTTGAGCTGCACAAAAACCTGGCGCTGGACTTGGAGAAGCTGAAAGACAGGACCCGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS CCA 72 bp | GGCGACAGAGCAAGACTTTGTGTTTGTCTTGTGCTTTaGCTGATTCGACTGCCGGTGGACCTTCATGCATTC | + |
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Preference number: 6 (lower is better) Translates to: GDRARLCVCLVL*LIRLPVDLHAF Trigger: GAATGCATGAAGGTCCACCGGCAGTCGAATCAGCCAAAGCACAAGACAAACACAAAGTCTTGCTCTGTCGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS CAA 72 bp | GGGCGACAGAGCAAGACTTTGTGTTTGTCTTGTGCTTaGGCTGATTCGACTGCCGGTGGACCTTCATGCATT | + |
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Preference number: 6 (lower is better) Translates to: GRQSKTLCLSCA*ADSTAGGPSCI Trigger: AATGCATGAAGGTCCACCGGCAGTCGAATCAGCCAAAGCACAAGACAAACACAAAGTCTTGCTCTGTCGCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS TCA 72 bp | CAGGGCCCCACAGATGCAGCCGTTCCAATGAGATTGTaGGGTAAAGTTGCTCGGGGAATTGTTCTGAACTTT | + |
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Preference number: 6 (lower is better) Translates to: QGPTDAAVPMRL*GKVARGIVLNF Trigger: AAAGTTCAGAACAATTCCCCGAGCAACTTTACCTCACAATCTCATTGGAACGGCTGCATCTGTGGGGCCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS TCA 72 bp | ACAGAGCAAGACTTTGTGTTTGTCTTGTGCTTTGGCTaGTTCGACTGCCGGTGGACCTTCATGCATTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: TEQDFVFVLCFG*FDCRWTFMHSS Trigger: GGAAGAATGCATGAAGGTCCACCGGCAGTCGAATCAGCCAAAGCACAAGACAAACACAAAGTCTTGCTCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS TCA 72 bp | TTTCCTATTTCCTATCCAGCCTTTCTTCCCGACAGCTaGCATCTGACCTTCTGGCTTCCCTTTGGGTTCATC | + |
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Preference number: 6 (lower is better) Translates to: FPISYPAFLPDS*HLTFWLPFGFI Trigger: GATGAACCCAAAGGGAAGCCAGAAGGTCAGATGTCAGCTGTCGGGAAGAAAGGCTGGATAGGAAATAGGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS CCA 72 bp | TCCCGACAGCTGACATCTGACCTTCTGGCTTCCCTTTaGGTTCATCAATGTTCAGGGTATTTATTACCCCCA | + |
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Preference number: 6 (lower is better) Translates to: SRQLTSDLLASL*VHQCSGYLLPP Trigger: TGGGGGTAATAAATACCCTGAACATTGATGAACCCAAAGGGAAGCCAGAAGGTCAGATGTCAGCTGTCGGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS CCA 72 bp | TCATCAAGGCTGGAGGTGGTGAGAGACAGAGTCAAGTaGTTCTTAAGGGTTTCAGTCCTTGAAGCTCCTTGT | + |
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Preference number: 6 (lower is better) Translates to: SSRLEVVRDRVK*FLRVSVLEAPC Trigger: ACAAGGAGCTTCAAGGACTGAAACCCTTAAGAACCACTTGACTCTGTCTCTCACCACCTCCAGCCTTGATGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS CAA 72 bp | CTGTCTTTCAGCTTCTCCAAGTCCAGCGCCAGGTTTTaGTGCAGCTCAAAGCAAAGGGCATCAGTTCTTCTA | + |
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Preference number: 6 (lower is better) Translates to: LSFSFSKSSARF*CSSKQRASVLL Trigger: TAGAAGAACTGATGCCCTTTGCTTTGAGCTGCACAAAAACCTGGCGCTGGACTTGGAGAAGCTGAAAGACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS CAA 90 bp | AGAGTCAAGTGGTTCTTAAGGGTTTCAGTCCTTGAAGCTCCTTGTTaGCCCTGCTTTTTCCTATTTCCTATCCAGCCTTTCTTCCCGACA | + |
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Preference number: 6 (lower is better) Translates to: RVKWFLRVSVLEAPC*PCFFLFPIQPFFPT Trigger: TGTCGGGAAGAAAGGCTGGATAGGAAATAGGAAAAAGCAGGGCAAACAAGGAGCTTCAAGGACTGAAACCCTTAAGAACCACTTGACTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS GCA 72 bp | TCTTTCAGCTTCTCCAAGTCCAGCGCCAGGTTTTTGTaGAGCTCAAAGCAAAGGGCATCAGTTCTTCTATAT | + |
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Preference number: 6 (lower is better) Translates to: SFSFSKSSARFL*SSKQRASVLLY Trigger: ATATAGAAGAACTGATGCCCTTTGCTTTGAGCTGCACAAAAACCTGGCGCTGGACTTGGAGAAGCTGAAAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS CAA 72 bp | CCTCAATTCCCTTCCCCAAAGAGTTTCAGGTTAGTGTaGCCCACAAGAGAAAAGCCAAGTATCCACAGGATA | + |
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Preference number: 6 (lower is better) Translates to: PQFPSPKSFRLV*PTREKPSIHRI Trigger: TATCCTGTGGATACTTGGCTTTTCTCTTGTGGGCAACACTAACCTGAAACTCTTTGGGGAAGGGAATTGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS CAA 72 bp | TGGTTCTTAAGGGTTTCAGTCCTTGAAGCTCCTTGTTaGCCCTGCTTTTTCCTATTTCCTATCCAGCCTTTC | + |
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Preference number: 6 (lower is better) Translates to: WFLRVSVLEAPC*PCFFLFPIQPF Trigger: GAAAGGCTGGATAGGAAATAGGAAAAAGCAGGGCAAACAAGGAGCTTCAAGGACTGAAACCCTTAAGAACCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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| CDS CCA 72 bp | CAGATTCCAACATCAGATTCCAAGTTCTTCAGCTTTTaGACTTATATCAGTGATTTGCCAGGGTCTCTCAGG | + |
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Preference number: 6 (lower is better) Translates to: QIPTSDSKFFSF*TYISDLPGSLR Trigger: CCTGAGAGACCCTGGCAAATCACTGATATAAGTCCAAAAGCTGAAGAACTTGGAATCTGATGTTGGAATCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414562.1 |
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