Pregenerated sensors for LINC00319 (Homo sapiens)
Ensembl gene IDs: ENSG00000188660Ensembl transcript IDs: ENST00000342757.3, ENST00000448049.1, ENST00000651768.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGCACGTCACCCCCACTCTGGATGAAGAGGCCGCATCAGGCGGGATaGGCTTGGCTACGCTGCAGTCACAAACAGCCCCACAGCTCACCA | + |
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Preference number: 5 (lower is better) Translates to: GTSPPLWMKRPHQAG*AWLRCSHKQPHSSP Trigger: TGGTGAGCTGTGGGGCTGTTTGTGACTGCAGCGTAGCCAAGCCCATCCCGCCTGATGCGGCCTCTTCATCCAGAGTGGGGGTGACGTGCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000448049.1 |
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| CDS GCA 90 bp | CTCTGGATGAAGAGGCCGCATCAGGCGGGATGGGCTTGGCTACGCTaGAGTCACAAACAGCCCCACAGCTCACCATGGGCTACAGCACAA | + |
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Preference number: 5 (lower is better) Translates to: LWMKRPHQAGWAWLR*SHKQPHSSPWATAQ Trigger: TTGTGCTGTAGCCCATGGTGAGCTGTGGGGCTGTTTGTGACTGCAGCGTAGCCAAGCCCATCCCGCCTGATGCGGCCTCTTCATCCAGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000448049.1 |
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| CDS GCA 90 bp | TTCACTGCACATGGCAAAGCTGTCCTAGAGGGTAAGGATGACAAATaGCTGTGCAGGAGGGAGGTCGCCTCTGGGAACCCTGGGGGAAGC | + |
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Preference number: 5 (lower is better) Translates to: FTAHGKAVLEGKDDK*LCRREVASGNPGGS Trigger: GCTTCCCCCAGGGTTCCCAGAGGCGACCTCCCTCCTGCACAGGCATTTGTCATCCTTACCCTCTAGGACAGCTTTGCCATGTGCAGTGAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000448049.1 ENST00000651768.1 |
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| CDS GCA 90 bp | TTCACTGCACATGGCAAAGCTGTCCTAGAGGGTAAGGATGACAAATaGCTGTGCAGGAGGGAGGTCGCCTCTGGGAACCCTTTGCTCTCA | + |
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Preference number: 5 (lower is better) Translates to: FTAHGKAVLEGKDDK*LCRREVASGNPLLS Trigger: TGAGAGCAAAGGGTTCCCAGAGGCGACCTCCCTCCTGCACAGGCATTTGTCATCCTTACCCTCTAGGACAGCTTTGCCATGTGCAGTGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000342757.3 |
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| CDS TCA 90 bp | TCTGCACCCGGAAGGAACTTTACGATAGTCACAGCACATTACAGCTaGCAAAGTGAGCTCCTTCCGTGGAGACGCTCCTCCCAGCATTCC | + |
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Preference number: 5 (lower is better) Translates to: SAPGRNFTIVTAHYS*QSELLPWRRSSQHS Trigger: GGAATGCTGGGAGGAGCGTCTCCACGGAAGGAGCTCACTTTGTCAGCTGTAATGTGCTGTGACTATCGTAAAGTTCCTTCCGGGTGCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000448049.1 |
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| CDS CCA 72 bp | CCCCCACTCTGGATGAAGAGGCCGCATCAGGCGGGATaGGCTTGGCTACGCTGCAGTCACAAACAGCCCCAC | + |
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Preference number: 6 (lower is better) Translates to: PPLWMKRPHQAG*AWLRCSHKQPH Trigger: GTGGGGCTGTTTGTGACTGCAGCGTAGCCAAGCCCATCCCGCCTGATGCGGCCTCTTCATCCAGAGTGGGGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000448049.1 |
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| CDS GCA 72 bp | AAGAGGCCGCATCAGGCGGGATGGGCTTGGCTACGCTaGAGTCACAAACAGCCCCACAGCTCACCATGGGCT | + |
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Preference number: 6 (lower is better) Translates to: KRPHQAGWAWLR*SHKQPHSSPWA Trigger: AGCCCATGGTGAGCTGTGGGGCTGTTTGTGACTGCAGCGTAGCCAAGCCCATCCCGCCTGATGCGGCCTCTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000448049.1 |
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| CDS CCA 72 bp | ATGCCTGTGCAGGAGGGAGGTCGCCTCTGGGAACCCTaGGGGAAGCAGGAGGGATGTGTTCCAGCTTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: MPVQEGGRLWEP*GKQEGCVPAFL Trigger: CAGGAAAGCTGGAACACATCCCTCCTGCTTCCCCCAGGGTTCCCAGAGGCGACCTCCCTCCTGCACAGGCAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000448049.1 ENST00000651768.1 |
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| CDS CCA 72 bp | CTCTGGATGAAGAGGCCGCATCAGGCGGGATGGGCTTaGCTACGCTGCAGTCACAAACAGCCCCACAGCTCA | + |
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Preference number: 6 (lower is better) Translates to: LWMKRPHQAGWA*LRCSHKQPHSS Trigger: TGAGCTGTGGGGCTGTTTGTGACTGCAGCGTAGCCAAGCCCATCCCGCCTGATGCGGCCTCTTCATCCAGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000448049.1 |
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| CDS CCA 72 bp | CTACGCTGCAGTCACAAACAGCCCCACAGCTCACCATaGGCTACAGCACAAGTTCATTGCCTGCACTTCGGG | + |
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Preference number: 6 (lower is better) Translates to: LRCSHKQPHSSP*ATAQVHCLHFG Trigger: CCCGAAGTGCAGGCAATGAACTTGTGCTGTAGCCCATGGTGAGCTGTGGGGCTGTTTGTGACTGCAGCGTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000448049.1 |
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| CDS CAA 90 bp | ACCTTGAAGGGCAGCCTGGGCACATACTGTCGAGGGACAAGGAACTaGCTGACAGCAGAAGGCTTCATGCCACATGCTTCGGTCTGTATA | + |
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Preference number: 6 (lower is better) Translates to: TLKGSLGTYCRGTRN*LTAEGFMPHASVCI Trigger: TATACAGACCGAAGCATGTGGCATGAAGCCTTCTGCTGTCAGCAAGTTCCTTGTCCCTCGACAGTATGTGCCCAGGCTGCCCTTCAAGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000342757.3 ENST00000448049.1 ENST00000651768.1 |
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| CDS TCA 72 bp | GGAAGGAACTTTACGATAGTCACAGCACATTACAGCTaGCAAAGTGAGCTCCTTCCGTGGAGACGCTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: GRNFTIVTAHYS*QSELLPWRRSS Trigger: GGAGGAGCGTCTCCACGGAAGGAGCTCACTTTGTCAGCTGTAATGTGCTGTGACTATCGTAAAGTTCCTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000448049.1 |
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