Pregenerated sensors for LINC00317 (Homo sapiens)
Ensembl gene IDs: ENSG00000238265Ensembl transcript IDs: ENST00000419069.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TGTAGAGGTGAATGCCCTCCCATCATTGAGGACAGGTGGCTGAGCTaGTGCTTTCATCATTTATTTCCAAGTACTGATATGCATGATCCC | + |
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Preference number: 5 (lower is better) Translates to: CRGECPPIIEDRWLS*CFHHLFPSTDMHDP Trigger: GGGATCATGCATATCAGTACTTGGAAATAAATGATGAAAGCAGCAGCTCAGCCACCTGTCCTCAATGATGGGAGGGCATTCACCTCTACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419069.1 |
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| CDS TCA 90 bp | TTTCCTGTAGAGGTGAATGCCCTCCCATCATTGAGGACAGGTGGCTaGGCTGCTGCTTTCATCATTTATTTCCAAGTACTGATATGCATG | + |
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Preference number: 5 (lower is better) Translates to: FPVEVNALPSLRTGG*AAAFIIYFQVLICM Trigger: CATGCATATCAGTACTTGGAAATAAATGATGAAAGCAGCAGCTCAGCCACCTGTCCTCAATGATGGGAGGGCATTCACCTCTACAGGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419069.1 |
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| CDS CCA 90 bp | CTTCTTTCCTGTAGAGGTGAATGCCCTCCCATCATTGAGGACAGGTaGCTGAGCTGCTGCTTTCATCATTTATTTCCAAGTACTGATATG | + |
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Preference number: 5 (lower is better) Translates to: LLSCRGECPPIIEDR*LSCCFHHLFPSTDM Trigger: CATATCAGTACTTGGAAATAAATGATGAAAGCAGCAGCTCAGCCACCTGTCCTCAATGATGGGAGGGCATTCACCTCTACAGGAAAGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419069.1 |
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| CDS GCA 90 bp | TGCTCAGATGGTAACAAAGCTTACATGACATTTTCCCAGAAGCCATaGCTAGTCAATGTCACCAACTTGTTTGACAGGAAGTGTGCCATT | + |
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Preference number: 5 (lower is better) Translates to: CSDGNKAYMTFSQKP*LVNVTNLFDRKCAI Trigger: AATGGCACACTTCCTGTCAAACAAGTTGGTGACATTGACTAGGCATGGCTTCTGGGAAAATGTCATGTAAGCTTTGTTACCATCTGAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419069.1 |
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| CDS GCA 90 bp | ACACACACACATGCTAAATATTTCAGTCAAGGAACATCTCCATTTTaGTCAGATGGTAACAAAGCTTACATGACATTTTCCCAGAAGCCA | + |
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Preference number: 5 (lower is better) Translates to: THTHAKYFSQGTSPF*SDGNKAYMTFSQKP Trigger: TGGCTTCTGGGAAAATGTCATGTAAGCTTTGTTACCATCTGAGCAAAATGGAGATGTTCCTTGACTGAAATATTTAGCATGTGTGTGTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000419069.1 |
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| CDS GCA 72 bp | AGGTTGACCATCTGTCTTCTTTCCTGTAGAGGTGAATaGCCTCCCATCATTGAGGACAGGTGGCTGAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: RLTICLLSCRGE*PPIIEDRWLSC Trigger: GCAGCTCAGCCACCTGTCCTCAATGATGGGAGGGCATTCACCTCTACAGGAAAGAAGACAGATGGTCAACCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419069.1 |
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| CDS CAA 90 bp | ATATTGGATACTTCCAAAGGCATTGGTAGTTCAGTGATAGAATTCTaGCAGTTCCACATGGCTAGGGAAGCCTCACAATCATGGCGGAAG | + |
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Preference number: 6 (lower is better) Translates to: ILDTSKGIGSSVIEF*QFHMAREASQSWRK Trigger: CTTCCGCCATGATTGTGAGGCTTCCCTAGCCATGTGGAACTGCAAGAATTCTATCACTGAACTACCAATGCCTTTGGAAGTATCCAATAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419069.1 |
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| CDS CAA 72 bp | ACTTCCAAAGGCATTGGTAGTTCAGTGATAGAATTCTaGCAGTTCCACATGGCTAGGGAAGCCTCACAATCA | + |
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Preference number: 6 (lower is better) Translates to: TSKGIGSSVIEF*QFHMAREASQS Trigger: TGATTGTGAGGCTTCCCTAGCCATGTGGAACTGCAAGAATTCTATCACTGAACTACCAATGCCTTTGGAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419069.1 |
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| CDS GCA 72 bp | GGTAACAAAGCTTACATGACATTTTCCCAGAAGCCATaGCTAGTCAATGTCACCAACTTGTTTGACAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: GNKAYMTFSQKP*LVNVTNLFDRK Trigger: CTTCCTGTCAAACAAGTTGGTGACATTGACTAGGCATGGCTTCTGGGAAAATGTCATGTAAGCTTTGTTACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419069.1 |
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| CDS CAA 72 bp | ATGCATGATCCCATAGGTAGCAAAACAACCAAAATATaGGATACTTCCAAAGGCATTGGTAGTTCAGTGATA | + |
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Preference number: 6 (lower is better) Translates to: MHDPIGSKTTKI*DTSKGIGSSVI Trigger: TATCACTGAACTACCAATGCCTTTGGAAGTATCCAATATTTTGGTTGTTTTGCTACCTATGGGATCATGCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000419069.1 |
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| CDS GCA 72 bp | CATGCTAAATATTTCAGTCAAGGAACATCTCCATTTTaGTCAGATGGTAACAAAGCTTACATGACATTTTCC | + |
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Preference number: 6 (lower is better) Translates to: HAKYFSQGTSPF*SDGNKAYMTFS Trigger: GGAAAATGTCATGTAAGCTTTGTTACCATCTGAGCAAAATGGAGATGTTCCTTGACTGAAATATTTAGCATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000419069.1 |
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