Pregenerated sensors for LINC00316 (Homo sapiens)
Ensembl gene IDs: ENSG00000237664Ensembl transcript IDs: ENST00000416722.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TCATACTGGCCCGCATGTCTTCGGACGGGAGTCGCAGCGCAAGCTTaGAGGTGGTCATTGCTGGGAGTGTTAAGGCAATACAGGTCTCTT | + |
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Preference number: 5 (lower is better) Translates to: SYWPACLRTGVAAQA*RWSLLGVLRQYRSL Trigger: AAGAGACCTGTATTGCCTTAACACTCCCAGCAATGACCACCTGCAAGCTTGCGCTGCGACTCCCGTCCGAAGACATGCGGGCCAGTATGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416722.1 |
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| CDS CCA 90 bp | TCCAGCAGGCGCGTGCTTTCATTAGACTTTCCCTCCTGTGGGTTCTaGCAGATTTCCCAACACAAGCACGGCAGGAAGTGCATTGTGTTT | + |
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Preference number: 5 (lower is better) Translates to: SSRRVLSLDFPSCGF*QISQHKHGRKCIVF Trigger: AAACACAATGCACTTCCTGCCGTGCTTGTGTTGGGAAATCTGCCAGAACCCACAGGAGGGAAAGTCTAATGAAAGCACGCGCCTGCTGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416722.1 |
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| CDS GCA 72 bp | CCCGCATGTCTTCGGACGGGAGTCGCAGCGCAAGCTTaGAGGTGGTCATTGCTGGGAGTGTTAAGGCAATAC | + |
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Preference number: 6 (lower is better) Translates to: PACLRTGVAAQA*RWSLLGVLRQY Trigger: GTATTGCCTTAACACTCCCAGCAATGACCACCTGCAAGCTTGCGCTGCGACTCCCGTCCGAAGACATGCGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416722.1 |
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| CDS CAA 72 bp | GCCCGCATGTCTTCGGACGGGAGTCGCAGCGCAAGCTaGCAGGTGGTCATTGCTGGGAGTGTTAAGGCAATA | + |
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Preference number: 6 (lower is better) Translates to: ARMSSDGSRSAS*QVVIAGSVKAI Trigger: TATTGCCTTAACACTCCCAGCAATGACCACCTGCAAGCTTGCGCTGCGACTCCCGTCCGAAGACATGCGGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416722.1 |
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| CDS CAA 90 bp | CTCATACTGGCCCGCATGTCTTCGGACGGGAGTCGCAGCGCAAGCTaGCAGGTGGTCATTGCTGGGAGTGTTAAGGCAATACAGGTCTCT | + |
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Preference number: 6 (lower is better) Translates to: LILARMSSDGSRSAS*QVVIAGSVKAIQVS Trigger: AGAGACCTGTATTGCCTTAACACTCCCAGCAATGACCACCTGCAAGCTTGCGCTGCGACTCCCGTCCGAAGACATGCGGGCCAGTATGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416722.1 |
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| CDS CAA 72 bp | CGGACGGGAGTCGCAGCGCAAGCTTGCAGGTGGTCATaGCTGGGAGTGTTAAGGCAATACAGGTCTCTTGCT | + |
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Preference number: 6 (lower is better) Translates to: RTGVAAQACRWS*LGVLRQYRSLA Trigger: AGCAAGAGACCTGTATTGCCTTAACACTCCCAGCAATGACCACCTGCAAGCTTGCGCTGCGACTCCCGTCCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416722.1 |
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| CDS CCA 72 bp | TGTCTTCGGACGGGAGTCGCAGCGCAAGCTTGCAGGTaGTCATTGCTGGGAGTGTTAAGGCAATACAGGTCT | + |
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Preference number: 6 (lower is better) Translates to: CLRTGVAAQACR*SLLGVLRQYRS Trigger: AGACCTGTATTGCCTTAACACTCCCAGCAATGACCACCTGCAAGCTTGCGCTGCGACTCCCGTCCGAAGACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416722.1 |
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| CDS CCA 72 bp | CGCGTGCTTTCATTAGACTTTCCCTCCTGTGGGTTCTaGCAGATTTCCCAACACAAGCACGGCAGGAAGTGC | + |
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Preference number: 6 (lower is better) Translates to: RVLSLDFPSCGF*QISQHKHGRKC Trigger: GCACTTCCTGCCGTGCTTGTGTTGGGAAATCTGCCAGAACCCACAGGAGGGAAAGTCTAATGAAAGCACGCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416722.1 |
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| CDS CAA 90 bp | GCTGAGTATTTTGATTCTGGTGAGCATCATTTCATGTGTGTGGTGTaGTCAACAGCCACAGGTGAGTCTAAAATAATAGCACAGGGTCTT | + |
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Preference number: 6 (lower is better) Translates to: AEYFDSGEHHFMCVV*STATGESKIIAQGL Trigger: AAGACCCTGTGCTATTATTTTAGACTCACCTGTGGCTGTTGACAACACCACACACATGAAATGATGCTCACCAGAATCAAAATACTCAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000416722.1 |
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| CDS CAA 72 bp | TTTGATTCTGGTGAGCATCATTTCATGTGTGTGGTGTaGTCAACAGCCACAGGTGAGTCTAAAATAATAGCA | + |
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Preference number: 6 (lower is better) Translates to: FDSGEHHFMCVV*STATGESKIIA Trigger: TGCTATTATTTTAGACTCACCTGTGGCTGTTGACAACACCACACACATGAAATGATGCTCACCAGAATCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416722.1 |
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