Pregenerated sensors for LINC00307 (Homo sapiens)
Ensembl gene IDs: ENSG00000227342Ensembl transcript IDs: ENST00000451410.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CGGAAGGTGGCAGCGCCTGAAACGTCTCAGAAAGCTTCCAGCCTCTaGCTGCTGGGCCTCGGCAGCAATTTGGCTTTGTTTCAGCAGTTG | + |
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Preference number: 5 (lower is better) Translates to: RKVAAPETSQKASSL*LLGLGSNLALFQQL Trigger: CAACTGCTGAAACAAAGCCAAATTGCTGCCGAGGCCCAGCAGGCAGAGGCTGGAAGCTTTCTGAGACGTTTCAGGCGCTGCCACCTTCCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451410.1 |
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| CDS GCA 90 bp | AGGTGGCAGCGCCTGAAACGTCTCAGAAAGCTTCCAGCCTCTGCCTaGTGGGCCTCGGCAGCAATTTGGCTTTGTTTCAGCAGTTGGATC | + |
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Preference number: 5 (lower is better) Translates to: RWQRLKRLRKLPASA*WASAAIWLCFSSWI Trigger: GATCCAACTGCTGAAACAAAGCCAAATTGCTGCCGAGGCCCAGCAGGCAGAGGCTGGAAGCTTTCTGAGACGTTTCAGGCGCTGCCACCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451410.1 |
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| CDS CCA 90 bp | CTCAGAAAGCTTCCAGCCTCTGCCTGCTGGGCCTCGGCAGCAATTTaGCTTTGTTTCAGCAGTTGGATCACAGTTGAGAGGAGGGGGTTG | + |
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Preference number: 5 (lower is better) Translates to: LRKLPASACWASAAI*LCFSSWITVERRGL Trigger: CAACCCCCTCCTCTCAACTGTGATCCAACTGCTGAAACAAAGCCAAATTGCTGCCGAGGCCCAGCAGGCAGAGGCTGGAAGCTTTCTGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000451410.1 |
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| CDS CCA 90 bp | TGGCAGCGCCTGAAACGTCTCAGAAAGCTTCCAGCCTCTGCCTGCTaGGCCTCGGCAGCAATTTGGCTTTGTTTCAGCAGTTGGATCACA | + |
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Preference number: 5 (lower is better) Translates to: WQRLKRLRKLPASAC*ASAAIWLCFSSWIT Trigger: TGTGATCCAACTGCTGAAACAAAGCCAAATTGCTGCCGAGGCCCAGCAGGCAGAGGCTGGAAGCTTTCTGAGACGTTTCAGGCGCTGCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451410.1 |
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| CDS TCA 90 bp | TTCAGCAGTTGGATCACAGTTGAGAGGAGGGGGTTGCAGGGATACTaGCAGGGAAGTCCTTCTCAGGACAAGGAAGGAGGCCTCTTTTCC | + |
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Preference number: 5 (lower is better) Translates to: FSSWITVERRGLQGY*QGSPSQDKEGGLFS Trigger: GGAAAAGAGGCCTCCTTCCTTGTCCTGAGAAGGACTTCCCTGTCAGTATCCCTGCAACCCCCTCCTCTCAACTGTGATCCAACTGCTGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000451410.1 |
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| CDS TCA 90 bp | GGCCTCGGCAGCAATTTGGCTTTGTTTCAGCAGTTGGATCACAGTTaGGAGGAGGGGGTTGCAGGGATACTGACAGGGAAGTCCTTCTCA | + |
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Preference number: 5 (lower is better) Translates to: GLGSNLALFQQLDHS*EEGVAGILTGKSFS Trigger: TGAGAAGGACTTCCCTGTCAGTATCCCTGCAACCCCCTCCTCTCAACTGTGATCCAACTGCTGAAACAAAGCCAAATTGCTGCCGAGGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000451410.1 |
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| CDS TCA 72 bp | CAATGCTTCTCTTTCTTCCCGGAAGGTGGCAGCGCCTaGAACGTCTCAGAAAGCTTCCAGCCTCTGCCTGCT | + |
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Preference number: 6 (lower is better) Translates to: QCFSFFPEGGSA*NVSESFQPLPA Trigger: AGCAGGCAGAGGCTGGAAGCTTTCTGAGACGTTTCAGGCGCTGCCACCTTCCGGGAAGAAAGAGAAGCATTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451410.1 |
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| CDS CCA 72 bp | TGGGCCTCGGCAGCAATTTGGCTTTGTTTCAGCAGTTaGATCACAGTTGAGAGGAGGGGGTTGCAGGGATAC | + |
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Preference number: 6 (lower is better) Translates to: WASAAIWLCFSS*ITVERRGLQGY Trigger: GTATCCCTGCAACCCCCTCCTCTCAACTGTGATCCAACTGCTGAAACAAAGCCAAATTGCTGCCGAGGCCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000451410.1 |
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| CDS CCA 72 bp | CTGAAACGTCTCAGAAAGCTTCCAGCCTCTGCCTGCTaGGCCTCGGCAGCAATTTGGCTTTGTTTCAGCAGT | + |
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Preference number: 6 (lower is better) Translates to: LKRLRKLPASAC*ASAAIWLCFSS Trigger: ACTGCTGAAACAAAGCCAAATTGCTGCCGAGGCCCAGCAGGCAGAGGCTGGAAGCTTTCTGAGACGTTTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451410.1 |
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| CDS CAA 72 bp | ACTTGTCTGCAGGGCTGGGAAAGAATAGTTCTGAATTaGAGGATCAACTTTGCCATATTGGAAGTAGTTTCC | + |
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Preference number: 6 (lower is better) Translates to: TCLQGWERIVLN*RINFAILEVVS Trigger: GGAAACTACTTCCAATATGGCAAAGTTGATCCTCAAATTCAGAACTATTCTTTCCCAGCCCTGCAGACAAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451410.1 |
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