Pregenerated sensors for LINC00301 (Homo sapiens)
Ensembl gene IDs: ENSG00000181995Ensembl transcript IDs: ENST00000320202.8, ENST00000412599.5, ENST00000527161.5, ENST00000532591.1, ENST00000643933.1, ENST00000644084.1, ENST00000646346.1, ENST00000646374.1
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGGCAATGCCAGGTAAGCCTCCTAGACGCCTGTATTGTGCCGAAATaGGTAGGACAAGAGTGGATCGTCTCAACTATACCATGGTTACTA | + |
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Preference number: 5 (lower is better) Translates to: RQCQVSLLDACIVPK*VGQEWIVSTIPWLL Trigger: TAGTAACCATGGTATAGTTGAGACGATCCACTCTTGTCCTACGCATTTCGGCACAATACAGGCGTCTAGGAGGCTTACCTGGCATTGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000527161.5 |
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| CDS GCA 90 bp | CTCTGTTACTGGGTACTTAAATGGATGGAAGATTCTCTCAGGCAATaGCAGGTAAGCCTCCTAGACGCCTGTATTGTGCCGAAATGCGTA | + |
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Preference number: 5 (lower is better) Translates to: LCYWVLKWMEDSLRQ*QVSLLDACIVPKCV Trigger: TACGCATTTCGGCACAATACAGGCGTCTAGGAGGCTTACCTGGCATTGCCTGAGAGAATCTTCCATCCATTTAAGTACCCAGTAACAGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000527161.5 |
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| CDS CCA 90 bp | GTGCCGAAATGCGTAGGACAAGAGTGGATCGTCTCAACTATACCATaGTTACTAGTAAAACATTCCTGGCAATGGGAGAACCCAGGACGA | + |
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Preference number: 5 (lower is better) Translates to: VPKCVGQEWIVSTIP*LLVKHSWQWENPGR Trigger: TCGTCCTGGGTTCTCCCATTGCCAGGAATGTTTTACTAGTAACCATGGTATAGTTGAGACGATCCACTCTTGTCCTACGCATTTCGGCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000527161.5 |
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| CDS CCA 90 bp | AGCCTCCTAGACGCCTGTATTGTGCCGAAATGCGTAGGACAAGAGTaGATCGTCTCAACTATACCATGGTTACTAGTAAAACATTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: SLLDACIVPKCVGQE*IVSTIPWLLVKHSW Trigger: CCAGGAATGTTTTACTAGTAACCATGGTATAGTTGAGACGATCCACTCTTGTCCTACGCATTTCGGCACAATACAGGCGTCTAGGAGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000527161.5 |
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| CDS TCA 90 bp | AGAAATAGAAGTTGTGCGTGGTGTGATTTCCAAGGATTCCGACAGTaGGATTTCCGAGGGCAAAGTGCCTTATATCTCGTAACAGGCTTC | + |
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Preference number: 5 (lower is better) Translates to: RNRSCAWCDFQGFRQ*DFRGQSALYLVTGF Trigger: GAAGCCTGTTACGAGATATAAGGCACTTTGCCCTCGGAAATCTCACTGTCGGAATCCTTGGAAATCACACCACGCACAACTTCTATTTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000320202.8 ENST00000412599.5 ENST00000527161.5 ENST00000644084.1 ENST00000646374.1 |
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| CDS GCA 90 bp | CCAGGTAGATCTAACAAGCAGCTGCAGTTCTTTGAGGATAAGATTTaGTTTGCTCCCTCTGTTACTGGGTACATGTGGCCACTGAATAGT | + |
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Preference number: 5 (lower is better) Translates to: PGRSNKQLQFFEDKI*FAPSVTGYMWPLNS Trigger: ACTATTCAGTGGCCACATGTACCCAGTAACAGAGGGAGCAAAGCAAATCTTATCCTCAAAGAACTGCAGCTGCTTGTTAGATCTACCTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000320202.8 ENST00000412599.5 ENST00000644084.1 ENST00000646346.1 ENST00000646374.1 |
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| CDS TCA 90 bp | AGAAATAGAAGTTGTGCGTGGTGTGATTTCCAAGGATTCCGACAGTaGGATTTCCGAGGGCAAAGTGCGTTTGACCAATTGTATGTGGTT | + |
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Preference number: 5 (lower is better) Translates to: RNRSCAWCDFQGFRQ*DFRGQSAFDQLYVV Trigger: AACCACATACAATTGGTCAAACGCACTTTGCCCTCGGAAATCTCACTGTCGGAATCCTTGGAAATCACACCACGCACAACTTCTATTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000532591.1 |
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| CDS GCA 90 bp | ATGGTGCAGATGAAGCTTGAAGGCAGTCTTCTGGAAAATTCCTCTTaGCCCATTGCTTTGGTGCCTTCTTTTAGGATAAATCTTCTCAGC | + |
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Preference number: 5 (lower is better) Translates to: MVQMKLEGSLLENSS*PIALVPSFRINLLS Trigger: GCTGAGAAGATTTATCCTAAAAGAAGGCACCAAAGCAATGGGGCAAGAGGAATTTTCCAGAAGACTGCCTTCAAGCTTCATCTGCACCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000646374.1 |
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| CDS TCA 90 bp | AGGCCAATCATTATTTGCACAGCCTGCGCTTTTGCCTTTGAATACTaGGGTCTCCAGACCCTCTTCAGAAAAAGTATGGGTCACAATTTT | + |
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Preference number: 5 (lower is better) Translates to: RPIIICTACAFAFEY*GLQTLFRKSMGHNF Trigger: AAAATTGTGACCCATACTTTTTCTGAAGAGGGTCTGGAGACCTCAGTATTCAAAGGCAAAAGCGCAGGCTGTGCAAATAATGATTGGCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000646374.1 |
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| CDS GCA 90 bp | CCAGGTAGATCTAACAAGCAGCTGCAGTTCTTTGAGGATAAGATTTaGTTTGCTCCCTCTGTTACTGGGTACTTAAATGGATGGAAGATT | + |
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Preference number: 5 (lower is better) Translates to: PGRSNKQLQFFEDKI*FAPSVTGYLNGWKI Trigger: AATCTTCCATCCATTTAAGTACCCAGTAACAGAGGGAGCAAAGCAAATCTTATCCTCAAAGAACTGCAGCTGCTTGTTAGATCTACCTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000527161.5 |
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| CDS TCA 90 bp | AATCTTTTGTTCTTGACTGGAGTCACACTGGTTCTTTGCAAATTATaGAGAAATAGAAGTTGTGCGTGGTGTGATTTCCAAGGATTCCGA | + |
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Preference number: 5 (lower is better) Translates to: NLLFLTGVTLVLCKL*RNRSCAWCDFQGFR Trigger: TCGGAATCCTTGGAAATCACACCACGCACAACTTCTATTTCTTCATAATTTGCAAAGAACCAGTGTGACTCCAGTCAAGAACAAAAGATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000320202.8 ENST00000412599.5 ENST00000527161.5 ENST00000532591.1 ENST00000644084.1 ENST00000646346.1 ENST00000646374.1 |
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| CDS TCA 90 bp | ATAAGATTTGCTTTGCTCCCTCTGTTACTGGGTACATGTGGCCACTaGATAGTTTCATCTTTCGTTAAAAAGAGTATAATTTCACATGCA | + |
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Preference number: 5 (lower is better) Translates to: IRFALLPLLLGTCGH*IVSSFVKKSIISHA Trigger: TGCATGTGAAATTATACTCTTTTTAACGAAAGATGAAACTATTCAGTGGCCACATGTACCCAGTAACAGAGGGAGCAAAGCAAATCTTAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000320202.8 ENST00000412599.5 ENST00000644084.1 ENST00000646346.1 ENST00000646374.1 |
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| CDS CCA 72 bp | ATGGAATCTATCTGCGTGGGCCAACAGAGTGTGATCTaGCAGTCAACTTCCTCAATTTGGGGCCTGGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: MESICVGQQSVI*QSTSSIWGLAA Trigger: GGCTGCCAGGCCCCAAATTGAGGAAGTTGACTGCCAGATCACACTCTGTTGGCCCACGCAGATAGATTCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000320202.8 ENST00000412599.5 ENST00000644084.1 ENST00000646346.1 ENST00000646374.1 |
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| CDS TCA 72 bp | GATGAATGGAATCTATCTGCGTGGGCCAACAGAGTGTaGTCTGGCAGTCAACTTCCTCAATTTGGGGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: DEWNLSAWANRV*SGSQLPQFGAW Trigger: CCAGGCCCCAAATTGAGGAAGTTGACTGCCAGATCACACTCTGTTGGCCCACGCAGATAGATTCCATTCATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000320202.8 ENST00000412599.5 ENST00000644084.1 ENST00000646346.1 ENST00000646374.1 |
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| CDS GCA 72 bp | CAGGTAAGCCTCCTAGACGCCTGTATTGTGCCGAAATaGGTAGGACAAGAGTGGATCGTCTCAACTATACCA | + |
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Preference number: 6 (lower is better) Translates to: QVSLLDACIVPK*VGQEWIVSTIP Trigger: TGGTATAGTTGAGACGATCCACTCTTGTCCTACGCATTTCGGCACAATACAGGCGTCTAGGAGGCTTACCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000527161.5 |
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| CDS TCA 72 bp | AGTTGTGCGTGGTGTGATTTCCAAGGATTCCGACAGTaGGATTTCCGAGGGCAAAGTGCGTTTGACCAATTG | + |
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Preference number: 6 (lower is better) Translates to: SCAWCDFQGFRQ*DFRGQSAFDQL Trigger: CAATTGGTCAAACGCACTTTGCCCTCGGAAATCTCACTGTCGGAATCCTTGGAAATCACACCACGCACAACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000532591.1 |
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| CDS TCA 72 bp | AGTTGTGCGTGGTGTGATTTCCAAGGATTCCGACAGTaGGATTTCCGAGGGCAAAGTGCTTTCTTCAGTGTG | + |
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Preference number: 6 (lower is better) Translates to: SCAWCDFQGFRQ*DFRGQSAFFSV Trigger: CACACTGAAGAAAGCACTTTGCCCTCGGAAATCTCACTGTCGGAATCCTTGGAAATCACACCACGCACAACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000643933.1 ENST00000646346.1 |
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| CDS TCA 72 bp | TGGAGATACGGAAGAGCTGATGGTGCAGATGAAGCTTaGAGGCAGTCTTCTGGAAAATTCCTCTTGCCCCAT | + |
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Preference number: 6 (lower is better) Translates to: WRYGRADGADEA*RQSSGKFLLPH Trigger: ATGGGGCAAGAGGAATTTTCCAGAAGACTGCCTTCAAGCTTCATCTGCACCATCAGCTCTTCCGTATCTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000646374.1 |
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| CDS TCA 72 bp | AGTTGTGCGTGGTGTGATTTCCAAGGATTCCGACAGTaGGATTTCCGAGGGCAAAGTGCCTTATATCTCGTA | + |
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Preference number: 6 (lower is better) Translates to: SCAWCDFQGFRQ*DFRGQSALYLV Trigger: TACGAGATATAAGGCACTTTGCCCTCGGAAATCTCACTGTCGGAATCCTTGGAAATCACACCACGCACAACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000320202.8 ENST00000412599.5 ENST00000527161.5 ENST00000644084.1 ENST00000646374.1 |
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| CDS CAA 72 bp | GAATCAGGCCAATCATTATTTGCACAGCCTGCGCTTTaGCCTTTGAATACTGAGGTCTCCAGACCCTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: ESGQSLFAQPAL*PLNTEVSRPSS Trigger: TGAAGAGGGTCTGGAGACCTCAGTATTCAAAGGCAAAAGCGCAGGCTGTGCAAATAATGATTGGCCTGATTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000646374.1 |
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| CDS CAA 90 bp | GTGCACTGTGAATCAGGCCAATCATTATTTGCACAGCCTGCGCTTTaGCCTTTGAATACTGAGGTCTCCAGACCCTCTTCAGAAAAAGTA | + |
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Preference number: 6 (lower is better) Translates to: VHCESGQSLFAQPAL*PLNTEVSRPSSEKV Trigger: TACTTTTTCTGAAGAGGGTCTGGAGACCTCAGTATTCAAAGGCAAAAGCGCAGGCTGTGCAAATAATGATTGGCCTGATTCACAGTGCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000646374.1 |
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| CDS TCA 72 bp | GCCAATCATTATTTGCACAGCCTGCGCTTTTGCCTTTaGATACTGAGGTCTCCAGACCCTCTTCAGAAAAAG | + |
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Preference number: 6 (lower is better) Translates to: ANHYLHSLRFCL*ILRSPDPLQKK Trigger: CTTTTTCTGAAGAGGGTCTGGAGACCTCAGTATTCAAAGGCAAAAGCGCAGGCTGTGCAAATAATGATTGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000646374.1 |
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| CDS CCA 72 bp | GATTTGCTTTGCTCCCTCTGTTACTGGGTACTTAAATaGATGGAAGATTCTCTCAGGCAATGCCAGGTAAGC | + |
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Preference number: 6 (lower is better) Translates to: DLLCSLCYWVLK*MEDSLRQCQVS Trigger: GCTTACCTGGCATTGCCTGAGAGAATCTTCCATCCATTTAAGTACCCAGTAACAGAGGGAGCAAAGCAAATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000527161.5 |
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| CDS CAA 72 bp | CAACACTACTCTCCTACATCCCTTCAACCACAGGGATaGCAGGGGCTATATTTATCCGTGTTAACCCATACT | + |
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Preference number: 6 (lower is better) Translates to: QHYSPTSLQPQG*QGLYLSVLTHT Trigger: AGTATGGGTTAACACGGATAAATATAGCCCCTGCAATCCCTGTGGTTGAAGGGATGTAGGAGAGTAGTGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000644084.1 ENST00000646346.1 ENST00000646374.1 |
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| CDS CAA 72 bp | GGCCAATCATTATTTGCACAGCCTGCGCTTTTGCCTTaGAATACTGAGGTCTCCAGACCCTCTTCAGAAAAA | + |
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Preference number: 6 (lower is better) Translates to: GQSLFAQPALLP*NTEVSRPSSEK Trigger: TTTTTCTGAAGAGGGTCTGGAGACCTCAGTATTCAAAGGCAAAAGCGCAGGCTGTGCAAATAATGATTGGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000646374.1 |
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| CDS TCA 72 bp | TCTCGTAACAGGCTTCTGTATTACACTACTGGATCCTaGGTTGATGAACCCCATTGCTTTGGTGCCTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: SRNRLLYYTTGS*VDEPHCFGAFF Trigger: AAAGAAGGCACCAAAGCAATGGGGTTCATCAACTCAGGATCCAGTAGTGTAATACAGAAGCCTGTTACGAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000320202.8 ENST00000532591.1 |
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| CDS TCA 72 bp | TCTCGTAACAGGCTTCTGTATTACACTACTGGATCCTaGGTTGATGAACTGAGCTCCGGGATAGTTCTGTTT | + |
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Preference number: 6 (lower is better) Translates to: SRNRLLYYTTGS*VDELSSGIVLF Trigger: AAACAGAACTATCCCGGAGCTCAGTTCATCAACTCAGGATCCAGTAGTGTAATACAGAAGCCTGTTACGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412599.5 ENST00000527161.5 |
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| CDS GCA 72 bp | TCTCTATGGAACCACCAGGTAGATCTAACAAGCAGCTaGAGTTCTTTGAGGATAAGATTTGCTTTGCTCCCT | + |
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Preference number: 6 (lower is better) Translates to: SLWNHQVDLTSS*SSLRIRFALLP Trigger: AGGGAGCAAAGCAAATCTTATCCTCAAAGAACTGCAGCTGCTTGTTAGATCTACCTGGTGGTTCCATAGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000320202.8 ENST00000412599.5 ENST00000527161.5 ENST00000644084.1 ENST00000646346.1 ENST00000646374.1 |
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| CDS CCA 72 bp | TGCGTAGGACAAGAGTGGATCGTCTCAACTATACCATaGTTACTAGTAAAACATTCCTGGCAATGGGAGAAC | + |
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Preference number: 6 (lower is better) Translates to: CVGQEWIVSTIP*LLVKHSWQWEN Trigger: GTTCTCCCATTGCCAGGAATGTTTTACTAGTAACCATGGTATAGTTGAGACGATCCACTCTTGTCCTACGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000527161.5 |
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| CDS CCA 72 bp | GACGCCTGTATTGTGCCGAAATGCGTAGGACAAGAGTaGATCGTCTCAACTATACCATGGTTACTAGTAAAA | + |
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Preference number: 6 (lower is better) Translates to: DACIVPKCVGQE*IVSTIPWLLVK Trigger: TTTTACTAGTAACCATGGTATAGTTGAGACGATCCACTCTTGTCCTACGCATTTCGGCACAATACAGGCGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000527161.5 |
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| CDS CCA 72 bp | ATTTACTCTGTATCTGTACATGTACTCTGTAAATTTTaGCTGGCAAGTCCAAAATTTATAGTGTGGGCCAGC | + |
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Preference number: 6 (lower is better) Translates to: IYSVSVHVLCKF*LASPKFIVWAS Trigger: GCTGGCCCACACTATAAATTTTGGACTTGCCAGCCAAAATTTACAGAGTACATGTACAGATACAGAGTAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000646374.1 |
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| CDS TCA 72 bp | AACCCCAACATTCTGGTTTCTTCTTTCAACACAATGTaGGATGATGGCATGTTATCCAAAATATGGTGTAGA | + |
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Preference number: 6 (lower is better) Translates to: NPNILVSSFNTM*DDGMLSKIWCR Trigger: TCTACACCATATTTTGGATAACATGCCATCATCTCACATTGTGTTGAAAGAAGAAACCAGAATGTTGGGGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000320202.8 ENST00000412599.5 ENST00000644084.1 ENST00000646346.1 ENST00000646374.1 |
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| CDS CCA 72 bp | TTATTGCAAGGCCGAAACTGTTTAAATTCATCCATATaGCATACATCAACCCCAACATTCTGGTTTCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: LLQGRNCLNSSI*HTSTPTFWFLL Trigger: AAGAAGAAACCAGAATGTTGGGGTTGATGTATGCCATATGGATGAATTTAAACAGTTTCGGCCTTGCAATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000320202.8 ENST00000412599.5 ENST00000644084.1 ENST00000646346.1 ENST00000646374.1 |
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