Pregenerated sensors for LINC00297 (Homo sapiens)

Ensembl gene IDs: ENSG00000224329

Ensembl transcript IDs: ENST00000453470.2

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CTTGAGTCCCACTCTTCTTCCCATTCCAAGCCAAGCTATTCTTCCTaGATACCAGAGCAGTGTTTCTGCTGGGCTCTCGATTCTAGTCCC	+
Preference number: 5 (lower is better) Translates to: LESHSSSHSKPSYSS*IPEQCFCWALDSSP Trigger: GGGACTAGAATCGAGAGCCCAGCAGAAACACTGCTCTGGTATTCAGGAAGAATAGCTTGGCTTGGAATGGGAAGAAGAGTGGGACTCAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453470.2
CDS TCA 90 bp	GGAGGACTCTGTCCAGCCTCACGAGTCAGGTCTGTTTTTACCAACTaGTTTCTGCTGGACTCCTGCAAAGTCTGTATTCTTGAGTCCCAC	+
Preference number: 5 (lower is better) Translates to: GGLCPASRVRSVFTN*FLLDSCKVCILESH Trigger: GTGGGACTCAAGAATACAGACTTTGCAGGAGTCCAGCAGAAATCAGTTGGTAAAAACAGACCTGACTCGTGAGGCTGGACAGAGTCCTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000453470.2
CDS TCA 90 bp	CTGTACTTTCCTCCCTGGGAAGTCATCACCATGATAGCACACACATaGAGGCCAGTCTTTGTGACCGTGGTGAAGAAAACAACTCTCCCC	+
Preference number: 5 (lower is better) Translates to: LYFPPWEVITMIAHT*RPVFVTVVKKTTLP Trigger: GGGGAGAGTTGTTTTCTTCACCACGGTCACAAAGACTGGCCTTCATGTGTGTGCTATCATGGTGATGACTTCCCAGGGAGGAAAGTACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000453470.2
CDS CCA 90 bp	GTCCAGCCTCACGAGTCAGGTCTGTTTTTACCAACTGATTTCTGCTaGACTCCTGCAAAGTCTGTATTCTTGAGTCCCACTCTTCTTCCC	+
Preference number: 5 (lower is better) Translates to: VQPHESGLFLPTDFC*TPAKSVFLSPTLLP Trigger: GGGAAGAAGAGTGGGACTCAAGAATACAGACTTTGCAGGAGTCCAGCAGAAATCAGTTGGTAAAAACAGACCTGACTCGTGAGGCTGGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000453470.2
CDS GCA 90 bp	AAGCCATGTGGTTTTTCCCCGCTAACTGATTTCTTCCTGGTGTTCTaGCACCACTTGCCTTTGAGAACTGAGTCCACAGCATCTCTTTTT	+
Preference number: 5 (lower is better) Translates to: KPCGFSPLTDFFLVF*HHLPLRTESTASLF Trigger: AAAAAGAGATGCTGTGGACTCAGTTCTCAAAGGCAAGTGGTGGCAGAACACCAGGAAGAAATCAGTTAGCGGGGAAAAACCACATGGCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000453470.2
CDS TCA 72 bp	CCTCCCTGGGAAGTCATCACCATGATAGCACACACATaGAGGCCAGTCTTTGTGACCGTGGTGAAGAAAACA	+
Preference number: 6 (lower is better) Translates to: PPWEVITMIAHT*RPVFVTVVKKT Trigger: TGTTTTCTTCACCACGGTCACAAAGACTGGCCTTCATGTGTGTGCTATCATGGTGATGACTTCCCAGGGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000453470.2
CDS TCA 72 bp	CACTCTTCTTCCCATTCCAAGCCAAGCTATTCTTCCTaGATACCAGAGCAGTGTTTCTGCTGGGCTCTCGAT	+
Preference number: 6 (lower is better) Translates to: HSSSHSKPSYSS*IPEQCFCWALD Trigger: ATCGAGAGCCCAGCAGAAACACTGCTCTGGTATTCAGGAAGAATAGCTTGGCTTGGAATGGGAAGAAGAGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453470.2
CDS CAA 90 bp	AATCTGTCCAGGCAGGTGGTTATAGGAAGTAAAATAGAGTCTAGTTaGGTTCCAGTGACTCAGATCCCAAGGCGTGGAGGACTCTGTCCA	+
Preference number: 6 (lower is better) Translates to: NLSRQVVIGSKIESS*VPVTQIPRRGGLCP Trigger: TGGACAGAGTCCTCCACGCCTTGGGATCTGAGTCACTGGAACCAAACTAGACTCTATTTTACTTCCTATAACCACCTGCCTGGACAGATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000453470.2
CDS CAA 72 bp	AGGCAGGTGGTTATAGGAAGTAAAATAGAGTCTAGTTaGGTTCCAGTGACTCAGATCCCAAGGCGTGGAGGA	+
Preference number: 6 (lower is better) Translates to: RQVVIGSKIESS*VPVTQIPRRGG Trigger: TCCTCCACGCCTTGGGATCTGAGTCACTGGAACCAAACTAGACTCTATTTTACTTCCTATAACCACCTGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000453470.2
CDS TCA 72 bp	TGTCCAGCCTCACGAGTCAGGTCTGTTTTTACCAACTaGTTTCTGCTGGACTCCTGCAAAGTCTGTATTCTT	+
Preference number: 6 (lower is better) Translates to: CPASRVRSVFTN*FLLDSCKVCIL Trigger: AAGAATACAGACTTTGCAGGAGTCCAGCAGAAATCAGTTGGTAAAAACAGACCTGACTCGTGAGGCTGGACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000453470.2
CDS CCA 72 bp	CACGAGTCAGGTCTGTTTTTACCAACTGATTTCTGCTaGACTCCTGCAAAGTCTGTATTCTTGAGTCCCACT	+
Preference number: 6 (lower is better) Translates to: HESGLFLPTDFC*TPAKSVFLSPT Trigger: AGTGGGACTCAAGAATACAGACTTTGCAGGAGTCCAGCAGAAATCAGTTGGTAAAAACAGACCTGACTCGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000453470.2
CDS CAA 90 bp	TTTTTACCAACTGATTTCTGCTGGACTCCTGCAAAGTCTGTATTCTaGAGTCCCACTCTTCTTCCCATTCCAAGCCAAGCTATTCTTCCT	+
Preference number: 6 (lower is better) Translates to: FLPTDFCWTPAKSVF*SPTLLPIPSQAILP Trigger: AGGAAGAATAGCTTGGCTTGGAATGGGAAGAAGAGTGGGACTCAAGAATACAGACTTTGCAGGAGTCCAGCAGAAATCAGTTGGTAAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000453470.2
CDS CAA 72 bp	AATCTGTTTCCACATCTAGAACCATCCATAAAACCTTaGACAGCAAAATGCCCACCTCATAGAGATACATGT	+
Preference number: 6 (lower is better) Translates to: NLFPHLEPSIKP*TAKCPPHRDTC Trigger: ACATGTATCTCTATGAGGTGGGCATTTTGCTGTCAAAGGTTTTATGGATGGTTCTAGATGTGGAAACAGATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000453470.2

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