Pregenerated sensors for LINC00290 (Homo sapiens)

Ensembl gene IDs: ENSG00000248197

Ensembl transcript IDs: ENST00000512487.1

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CCCCAGCTCCTCGGCCAGCTTTGGCTCCGGTTCAGGGCCATCTTCTaGTGTAAACGTCAGAACTCATTCTGTGCCATCCAGTTGCTGCTC	+
Preference number: 5 (lower is better) Translates to: PQLLGQLWLRFRAIF*CKRQNSFCAIQLLL Trigger: GAGCAGCAACTGGATGGCACAGAATGAGTTCTGACGTTTACATCAGAAGATGGCCCTGAACCGGAGCCAAAGCTGGCCGAGGAGCTGGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000512487.1
CDS GCA 90 bp	CCATCTTCTGATGTAAACGTCAGAACTCATTCTGTGCCATCCAGTTaGTGCTCTTTCTGTGGAGTCCTGAGCAAGTTGCTAATCCTATTT	+
Preference number: 5 (lower is better) Translates to: PSSDVNVRTHSVPSS*CSFCGVLSKLLILF Trigger: AAATAGGATTAGCAACTTGCTCAGGACTCCACAGAAAGAGCAGCAACTGGATGGCACAGAATGAGTTCTGACGTTTACATCAGAAGATGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512487.1
CDS CCA 90 bp	TTGCTGCTCTTTCTGTGGAGTCCTGAGCAAGTTGCTAATCCTATTTaGCCTCCATTTCTTATCTGTACAGTAACAGTGATGGATTCGCTT	+
Preference number: 5 (lower is better) Translates to: LLLFLWSPEQVANPI*PPFLICTVTVMDSL Trigger: AAGCGAATCCATCACTGTTACTGTACAGATAAGAAATGGAGGCCAAATAGGATTAGCAACTTGCTCAGGACTCCACAGAAAGAGCAGCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512487.1
CDS TCA 72 bp	CTCGGCCAGCTTTGGCTCCGGTTCAGGGCCATCTTCTaGTGTAAACGTCAGAACTCATTCTGTGCCATCCAG	+
Preference number: 6 (lower is better) Translates to: LGQLWLRFRAIF*CKRQNSFCAIQ Trigger: CTGGATGGCACAGAATGAGTTCTGACGTTTACATCAGAAGATGGCCCTGAACCGGAGCCAAAGCTGGCCGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512487.1
CDS TCA 72 bp	AAAACCAACAATAGAGTCAGCATCTCACTTCACAAATaGAAGTGTGAGTCTCAGAATCTCCCCCAGCTCCTC	+
Preference number: 6 (lower is better) Translates to: KTNNRVSISLHK*KCESQNLPQLL Trigger: GAGGAGCTGGGGGAGATTCTGAGACTCACACTTTCATTTGTGAAGTGAGATGCTGACTCTATTGTTGGTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000512487.1
CDS CAA 72 bp	TCCAGTTGCTGCTCTTTCTGTGGAGTCCTGAGCAAGTaGCTAATCCTATTTGGCCTCCATTTCTTATCTGTA	+
Preference number: 6 (lower is better) Translates to: SSCCSFCGVLSK*LILFGLHFLSV Trigger: TACAGATAAGAAATGGAGGCCAAATAGGATTAGCAACTTGCTCAGGACTCCACAGAAAGAGCAGCAACTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512487.1
CDS CCA 72 bp	TTTCTGTGGAGTCCTGAGCAAGTTGCTAATCCTATTTaGCCTCCATTTCTTATCTGTACAGTAACAGTGATG	+
Preference number: 6 (lower is better) Translates to: FLWSPEQVANPI*PPFLICTVTVM Trigger: CATCACTGTTACTGTACAGATAAGAAATGGAGGCCAAATAGGATTAGCAACTTGCTCAGGACTCCACAGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512487.1

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