Pregenerated sensors for LINC00278 (Homo sapiens)
Ensembl gene IDs: ENSG00000231535Ensembl transcript IDs: ENST00000425031.1, ENST00000444263.6, ENST00000651090.1, ENST00000652068.1, ENST00000653660.1, ENST00000654222.1, ENST00000655607.1, ENST00000665487.1
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | ACCCTGGGAGGTGATGAGGCTCCCCTTCTGTCATGGGACAGGTCTTaGCTCGGGCCCAAACCTTACCGAGGTCCTGTAGCACACTGTTCC | + |
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Preference number: 5 (lower is better) Translates to: TLGGDEAPLLSWDRS*LGPKPYRGPVAHCS Trigger: GGAACAGTGTGCTACAGGACCTCGGTAAGGTTTGGGCCCGAGGCAAGACCTGTCCCATGACAGAAGGGGAGCCTCATCACCTCCCAGGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654222.1 |
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| CDS CCA 90 bp | CCCACAGGCAAAGGAGACAGCAAACCTGTCGTCTTCACTCCTGGCTaGCTCACCAAAATGTGGCTGGAATCAGGAGACCGGAGAGACCAA | + |
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Preference number: 5 (lower is better) Translates to: PTGKGDSKPVVFTPG*LTKMWLESGDRRDQ Trigger: TTGGTCTCTCCGGTCTCCTGATTCCAGCCACATTTTGGTGAGCCAGCCAGGAGTGAAGACGACAGGTTTGCTGTCTCCTTTGCCTGTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000444263.6 ENST00000651090.1 ENST00000652068.1 ENST00000654222.1 ENST00000655607.1 ENST00000665487.1 |
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| CDS CCA 90 bp | CAGACCCACAGGCAAAGGAGACAGCAAACCTGTCGTCTTCACTCCTaGCTGGCTCACCAAAATGTGGCTGGAATCAGGAGACCGGAGAGA | + |
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Preference number: 5 (lower is better) Translates to: QTHRQRRQQTCRLHS*LAHQNVAGIRRPER Trigger: TCTCTCCGGTCTCCTGATTCCAGCCACATTTTGGTGAGCCAGCCAGGAGTGAAGACGACAGGTTTGCTGTCTCCTTTGCCTGTGGGTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000444263.6 ENST00000651090.1 ENST00000652068.1 ENST00000654222.1 ENST00000655607.1 ENST00000665487.1 |
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| CDS CCA 90 bp | GCAAACCTGTCGTCTTCACTCCTGGCTGGCTCACCAAAATGTGGCTaGAATCAGGAGACCGGAGAGACCAATGAGGGGAACAGGACGATT | + |
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Preference number: 5 (lower is better) Translates to: ANLSSSLLAGSPKCG*NQETGETNEGNRTI Trigger: AATCGTCCTGTTCCCCTCATTGGTCTCTCCGGTCTCCTGATTCCAGCCACATTTTGGTGAGCCAGCCAGGAGTGAAGACGACAGGTTTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000444263.6 ENST00000651090.1 ENST00000652068.1 ENST00000654222.1 ENST00000665487.1 |
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| CDS CCA 90 bp | TCTATGCTAAGAGACCTGTGGCTCCACACACACCATTCCCCACGTTaGTTCCTTTTGGAATCGTCTGTTTCACACACATTCACACACCTC | + |
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Preference number: 5 (lower is better) Translates to: SMLRDLWLHTHHSPR*FLLESSVSHTFTHL Trigger: GAGGTGTGTGAATGTGTGTGAAACAGACGATTCCAAAAGGAACCAACGTGGGGAATGGTGTGTGTGGAGCCACAGGTCTCTTAGCATAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654222.1 |
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| CDS CCA 90 bp | TTTCGTTTCTTAACTGACTTAGCAAGCCACTTTTGTGTCCTGGGTTaGTTGGGGTGTAGGTTTCTTCCAAATTTGCGAGCCACTCTTGCA | + |
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Preference number: 5 (lower is better) Translates to: FRFLTDLASHFCVLG*LGCRFLPNLRATLA Trigger: TGCAAGAGTGGCTCGCAAATTTGGAAGAAACCTACACCCCAACCAACCCAGGACACAAAAGTGGCTTGCTAAGTCAGTTAAGAAACGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654222.1 |
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| CDS CCA 90 bp | ATTTGGATGGCTTTTCTTTCTTTCTCTTGCCTGAATGCTCTGACCTaGACATCCAGTATTATGGTAAATAGGAGTGGTGAGATTGGGCAT | + |
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Preference number: 5 (lower is better) Translates to: IWMAFLSFSCLNALT*TSSIMVNRSGEIGH Trigger: ATGCCCAATCTCACCACTCCTATTTACCATAATACTGGATGTCCAGGTCAGAGCATTCAGGCAAGAGAAAGAAAGAAAAGCCATCCAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653660.1 |
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| CDS CCA 90 bp | CATCCTGACACTTTGATGAAGTTGTTTATCAGATCAAGGAGTTCTTaGGCAGAGACTATGGGACTTTCAAGGTATAGAATTATATCATTG | + |
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Preference number: 5 (lower is better) Translates to: HPDTLMKLFIRSRSS*AETMGLSRYRIISL Trigger: CAATGATATAATTCTATACCTTGAAAGTCCCATAGTCTCTGCCCAAGAACTCCTTGATCTGATAAACAACTTCATCAAAGTGTCAGGATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653660.1 |
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| CDS CAA 90 bp | GCTGGGAAGTCCAACATAGAGGGGCTGCATCTGGTGAGGGTCTTCTaGCGAGGTCCTGTAGCACACTGTTCCTTGAATCATCCTGTAGCC | + |
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Preference number: 6 (lower is better) Translates to: AGKSNIEGLHLVRVF*RGPVAHCSLNHPVA Trigger: GGCTACAGGATGATTCAAGGAACAGTGTGCTACAGGACCTCGCAAGAAGACCCTCACCAGATGCAGCCCCTCTATGTTGGACTTCCCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000425031.1 ENST00000444263.6 ENST00000652068.1 |
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| CDS CCA 72 bp | AAAGGAGACAGCAAACCTGTCGTCTTCACTCCTGGCTaGCTCACCAAAATGTGGCTGGAATCAGGAGACCGG | + |
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Preference number: 6 (lower is better) Translates to: KGDSKPVVFTPG*LTKMWLESGDR Trigger: CCGGTCTCCTGATTCCAGCCACATTTTGGTGAGCCAGCCAGGAGTGAAGACGACAGGTTTGCTGTCTCCTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000444263.6 ENST00000651090.1 ENST00000652068.1 ENST00000654222.1 ENST00000655607.1 ENST00000665487.1 |
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| CDS CCA 72 bp | AGGCAAAGGAGACAGCAAACCTGTCGTCTTCACTCCTaGCTGGCTCACCAAAATGTGGCTGGAATCAGGAGA | + |
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Preference number: 6 (lower is better) Translates to: RQRRQQTCRLHS*LAHQNVAGIRR Trigger: TCTCCTGATTCCAGCCACATTTTGGTGAGCCAGCCAGGAGTGAAGACGACAGGTTTGCTGTCTCCTTTGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000444263.6 ENST00000651090.1 ENST00000652068.1 ENST00000654222.1 ENST00000655607.1 ENST00000665487.1 |
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| CDS CCA 72 bp | ACCTTGAGTGGTTGTAGCACATTTACTTCCGGAGGCTaGGAAGTCCAACATAGAGGGGCTGCATCTGGTGAG | + |
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Preference number: 6 (lower is better) Translates to: TLSGCSTFTSGG*EVQHRGAASGE Trigger: CTCACCAGATGCAGCCCCTCTATGTTGGACTTCCCAGCCTCCGGAAGTAAATGTGCTACAACCACTCAAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655607.1 |
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| CDS CCA 72 bp | TTGAGTGGTTGTAGCACATTTCTAACTTCCGGAGGCTaGGAAGTCCAACATAGAGGGGCTGCATCTGGTGAG | + |
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Preference number: 6 (lower is better) Translates to: LSGCSTFLTSGG*EVQHRGAASGE Trigger: CTCACCAGATGCAGCCCCTCTATGTTGGACTTCCCAGCCTCCGGAAGTTAGAAATGTGCTACAACCACTCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000425031.1 ENST00000444263.6 ENST00000651090.1 ENST00000652068.1 |
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| CDS CCA 72 bp | ACTCTTGCATCCTGGGTCATATTACTAGGTATACCCTaGGAGGTGATGAGGCTCCCCTTCTGTCATGGGACA | + |
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Preference number: 6 (lower is better) Translates to: TLASWVILLGIP*EVMRLPFCHGT Trigger: TGTCCCATGACAGAAGGGGAGCCTCATCACCTCCCAGGGTATACCTAGTAATATGACCCAGGATGCAAGAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654222.1 |
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| CDS CCA 72 bp | GGCTCCACACACACCATTCCCCACGTTGGTTCCTTTTaGAATCGTCTGTTTCACACACATTCACACACCTCC | + |
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Preference number: 6 (lower is better) Translates to: GSTHTIPHVGSF*NRLFHTHSHTS Trigger: GGAGGTGTGTGAATGTGTGTGAAACAGACGATTCCAAAAGGAACCAACGTGGGGAATGGTGTGTGTGGAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654222.1 |
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| CDS CAA 72 bp | TCCAACATAGAGGGGCTGCATCTGGTGAGGGTCTTCTaGCGAGGTCCTGTAGCACACTGTTCCTTGAATCAT | + |
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Preference number: 6 (lower is better) Translates to: SNIEGLHLVRVF*RGPVAHCSLNH Trigger: ATGATTCAAGGAACAGTGTGCTACAGGACCTCGCAAGAAGACCCTCACCAGATGCAGCCCCTCTATGTTGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000425031.1 ENST00000444263.6 ENST00000652068.1 |
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| CDS CAA 72 bp | TGGCTCCACACACACCATTCCCCACGTTGGTTCCTTTaGGAATCGTCTGTTTCACACACATTCACACACCTC | + |
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Preference number: 6 (lower is better) Translates to: WLHTHHSPRWFL*ESSVSHTFTHL Trigger: GAGGTGTGTGAATGTGTGTGAAACAGACGATTCCAAAAGGAACCAACGTGGGGAATGGTGTGTGTGGAGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654222.1 |
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| CDS CAA 72 bp | ACTGGAGGTCTGGTTCAGAGTATCAGAATGACAAATTaGTCATGTTCTCAGTCATTTGTGGGAGCAATGAAA | + |
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Preference number: 6 (lower is better) Translates to: TGGLVQSIRMTN*SCSQSFVGAMK Trigger: TTTCATTGCTCCCACAAATGACTGAGAACATGACAAATTTGTCATTCTGATACTCTGAACCAGACCTCCAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000652068.1 ENST00000655607.1 |
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| CDS CAA 72 bp | TGCACATTGATTTTGCATCCTGACACTTTGATGAAGTaGTTTATCAGATCAAGGAGTTCTTGGGCAGAGACT | + |
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Preference number: 6 (lower is better) Translates to: CTLILHPDTLMK*FIRSRSSWAET Trigger: AGTCTCTGCCCAAGAACTCCTTGATCTGATAAACAACTTCATCAAAGTGTCAGGATGCAAAATCAATGTGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653660.1 |
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| CDS CAA 90 bp | ATAAATGAAACTGGAGGTCTGGTTCAGAGTATCAGAATGACAAATTaGTCATGTTCTCAGTCATTTGTGGGAGCAATGAAACAGAACAGG | + |
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Preference number: 6 (lower is better) Translates to: INETGGLVQSIRMTN*SCSQSFVGAMKQNR Trigger: CCTGTTCTGTTTCATTGCTCCCACAAATGACTGAGAACATGACAAATTTGTCATTCTGATACTCTGAACCAGACCTCCAGTTTCATTTAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000652068.1 ENST00000655607.1 |
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| CDS TCA 72 bp | AAATTTTGTCAAAAGTCTTTACTGCATCATTGTTTATaGCTGCTGTTGAGAGCGCCACTGGGAATCAAGCTT | + |
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Preference number: 6 (lower is better) Translates to: KFCQKSLLHHCL*LLLRAPLGIKL Trigger: AAGCTTGATTCCCAGTGGCGCTCTCAACAGCAGTCATAAACAATGATGCAGTAAAGACTTTTGACAAAATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653660.1 |
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| CDS TCA 72 bp | TTTCAAAAGACACCCTGTCATTTACAACAACATAAATaGAACTGGAGGTCTGGTTCAGAGTATCAGAATGAC | + |
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Preference number: 6 (lower is better) Translates to: FQKTPCHLQQHK*NWRSGSEYQND Trigger: GTCATTCTGATACTCTGAACCAGACCTCCAGTTTCATTTATGTTGTTGTAAATGACAGGGTGTCTTTTGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000652068.1 ENST00000655607.1 |
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| CDS CCA 72 bp | ACTTTGATGAAGTTGTTTATCAGATCAAGGAGTTCTTaGGCAGAGACTATGGGACTTTCAAGGTATAGAATT | + |
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Preference number: 6 (lower is better) Translates to: TLMKLFIRSRSS*AETMGLSRYRI Trigger: AATTCTATACCTTGAAAGTCCCATAGTCTCTGCCCAAGAACTCCTTGATCTGATAAACAACTTCATCAAAGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653660.1 |
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