RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC00272 (Homo sapiens)

Ensembl gene IDs: ENSG00000203729

Ensembl transcript IDs: ENST00000367563.7, ENST00000612603.1

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp ATATCATTTTCAGCCTCAAACATCTGGTGTTCTAGTGCACACTTCTaGCCTTCTCCTCCTCTGACTGTCGACATCCCTGTTCCAGTTTTC +
Preference number: 5 (lower is better)
Translates to: ISFSASNIWCSSAHF*PSPPLTVDIPVPVF
Trigger: GAAAACTGGAACAGGGATGTCGACAGTCAGAGGAGGAGAAGGGCAGAAGTGTGCACTAGAACACCAGATGTTTGAGGCTGAAAATGATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000367563.7
CDS CCA 90 bp GGGGCTATTTATTCTGCATCCATATCATTTTCAGCCTCAAACATCTaGTGTTCTAGTGCACACTTCTGCCCTTCTCCTCCTCTGACTGTC +
Preference number: 5 (lower is better)
Translates to: GAIYSASISFSASNI*CSSAHFCPSPPLTV
Trigger: GACAGTCAGAGGAGGAGAAGGGCAGAAGTGTGCACTAGAACACCAGATGTTTGAGGCTGAAAATGATATGGATGCAGAATAAATAGCCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000367563.7
CDS CCA 90 bp GTTTCCCCCACAAAACAGCTTTCCCAGTACTCTGTGTTTAGATTCTaGAGCTGTCTTGCAGTTCTGCTAATCATTCACCACCTTTGGCTT +
Preference number: 5 (lower is better)
Translates to: VSPTKQLSQYSVFRF*SCLAVLLIIHHLWL
Trigger: AAGCCAAAGGTGGTGAATGATTAGCAGAACTGCAAGACAGCTCCAGAATCTAAACACAGAGTACTGGGAAAGCTGTTTTGTGGGGGAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000367563.7
ENST00000612603.1
CDS CAA 72 bp GGAGCAGACAGGCCACAAAGGACCTCCTCGGCTCTTTaGGTCAGTCTGAGTTTCCCCCACAAAACAGCTTTC +
Preference number: 6 (lower is better)
Translates to: GADRPQRTSSAL*VSLSFPHKTAF
Trigger: GAAAGCTGTTTTGTGGGGGAAACTCAGACTGACCAAAAGAGCCGAGGAGGTCCTTTGTGGCCTGTCTGCTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000367563.7
ENST00000612603.1
CDS CAA 90 bp TATTCCCATGGAGCAGACAGGCCACAAAGGACCTCCTCGGCTCTTTaGGTCAGTCTGAGTTTCCCCCACAAAACAGCTTTCCCAGTACTC +
Preference number: 6 (lower is better)
Translates to: YSHGADRPQRTSSAL*VSLSFPHKTAFPVL
Trigger: GAGTACTGGGAAAGCTGTTTTGTGGGGGAAACTCAGACTGACCAAAAGAGCCGAGGAGGTCCTTTGTGGCCTGTCTGCTCCATGGGAATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000367563.7
ENST00000612603.1
CDS GCA 72 bp TCAGCCTCAAACATCTGGTGTTCTAGTGCACACTTCTaGCCTTCTCCTCCTCTGACTGTCGACATCCCTGTT +
Preference number: 6 (lower is better)
Translates to: SASNIWCSSAHF*PSPPLTVDIPV
Trigger: AACAGGGATGTCGACAGTCAGAGGAGGAGAAGGGCAGAAGTGTGCACTAGAACACCAGATGTTTGAGGCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000367563.7
CDS TCA 72 bp CAGCTACTGTGGGCAGTGTGTCTGGTTTGGGATGGGTaGTTCCTATCTTCAAAGTCCTGGGATCAGGATGTT +
Preference number: 6 (lower is better)
Translates to: QLLWAVCLVWDG*FLSSKSWDQDV
Trigger: AACATCCTGATCCCAGGACTTTGAAGATAGGAATCACCCATCCCAAACCAGACACACTGCCCACAGTAGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367563.7
ENST00000612603.1
CDS CCA 72 bp TTCTCAGCTACTGTGGGCAGTGTGTCTGGTTTGGGATaGGTGATTCCTATCTTCAAAGTCCTGGGATCAGGA +
Preference number: 6 (lower is better)
Translates to: FSATVGSVSGLG*VIPIFKVLGSG
Trigger: TCCTGATCCCAGGACTTTGAAGATAGGAATCACCCATCCCAAACCAGACACACTGCCCACAGTAGCTGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367563.7
ENST00000612603.1
CDS CAA 72 bp GGACAATTTGCCAAAGCCACTTCCTCTCCCAACCCCTaGTCCTCCACTTGCACTTCAGTCCATGCAATAATG +
Preference number: 6 (lower is better)
Translates to: GQFAKATSSPNP*SSTCTSVHAIM
Trigger: CATTATTGCATGGACTGAAGTGCAAGTGGAGGACAAGGGGTTGGGAGAGGAAGTGGCTTTGGCAAATTGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000367563.7