Pregenerated sensors for LINC00254 (Homo sapiens)
Ensembl gene IDs: ENSG00000281219, ENSG00000282469Ensembl transcript IDs: ENST00000563416.3, ENST00000633134.1, ENST00000633220.1, ENST00000633813.1
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CAA 72 bp | ACTAAAAGTCAGGCTGTCTGGTCAAAAGTCTCAGCCTaGCCACTAATTAGCTGTGTCACTCAAGCATCTGAA | + |
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Preference number: 6 (lower is better) Translates to: TKSQAVWSKVSA*PLISCVTQASE Trigger: TTCAGATGCTTGAGTGACACAGCTAATTAGTGGCAAGGCTGAGACTTTTGACCAGACAGCCTGACTTTTAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000563416.3 ENST00000633220.1 |
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| CDS TCA 72 bp | GGGGATCATTCAATACTCGTAAGTAATATCCGCGTCTaGTATGTAACAAAGCTGCTGAACTGGCTTTACCAT | + |
|
Preference number: 6 (lower is better) Translates to: GDHSILVSNIRV*YVTKLLNWLYH Trigger: ATGGTAAAGCCAGTTCAGCAGCTTTGTTACATATCAGACGCGGATATTACTTACGAGTATTGAATGATCCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000633134.1 ENST00000633813.1 |
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| CDS CCA 72 bp | TTAACATGCATGGTAGAAACTAAAAGTCAGGCTGTCTaGTCAAAAGTCTCAGCCTTGCCACTAATTAGCTGT | + |
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Preference number: 6 (lower is better) Translates to: LTCMVETKSQAV*SKVSALPLISC Trigger: ACAGCTAATTAGTGGCAAGGCTGAGACTTTTGACCAGACAGCCTGACTTTTAGTTTCTACCATGCATGTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000563416.3 ENST00000633220.1 |
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| CDS CAA 90 bp | ATGGTAGAAACTAAAAGTCAGGCTGTCTGGTCAAAAGTCTCAGCCTaGCCACTAATTAGCTGTGTCACTCAAGCATCTGAACTTCATTTT | + |
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Preference number: 6 (lower is better) Translates to: MVETKSQAVWSKVSA*PLISCVTQASELHF Trigger: AAAATGAAGTTCAGATGCTTGAGTGACACAGCTAATTAGTGGCAAGGCTGAGACTTTTGACCAGACAGCCTGACTTTTAGTTTCTACCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000563416.3 ENST00000633220.1 |
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