Pregenerated sensors for LINC00240 (Homo sapiens)
Ensembl gene IDs: ENSG00000224843Ensembl transcript IDs: ENST00000420081.2, ENST00000424968.6, ENST00000606878.2, ENST00000607607.5, ENST00000652085.1, ENST00000654448.1, ENST00000659035.1, ENST00000660952.1, ENST00000661007.1, ENST00000661575.1, ENST00000662403.1, ENST00000664092.1, ENST00000664178.1, ENST00000666341.1, ENST00000668297.1, ENST00000669756.1, ENST00000670365.1
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CGGGCGCGCGCCCTTAGTCCTGGGGCCGCTTCTCCCCCGGACGCGTaGGAAGGCGGACTGGGTTCCGCTGCGGTCTCCACGGGAGCCACC | + |
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Preference number: 5 (lower is better) Translates to: RARALSPGAASPPDA*EGGLGSAAVSTGAT Trigger: GGTGGCTCCCGTGGAGACCGCAGCGGAACCCAGTCCGCCTTCGCACGCGTCCGGGGGAGAAGCGGCCCCAGGACTAAGGGCGCGCGCCCG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000662403.1 ENST00000664092.1 ENST00000666341.1 ENST00000668297.1 |
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| CDS GCA 90 bp | GGCCGCTTCTCCCCCGGACGCGTGCGAAGGCGGACTGGGTTCCGCTaGGGTCTCCACGGGAGCCACCGGTCCTTCAAGTGGCCGCCGTGT | + |
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Preference number: 5 (lower is better) Translates to: GRFSPGRVRRRTGFR*GLHGSHRSFKWPPC Trigger: ACACGGCGGCCACTTGAAGGACCGGTGGCTCCCGTGGAGACCGCAGCGGAACCCAGTCCGCCTTCGCACGCGTCCGGGGGAGAAGCGGCC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000668297.1 |
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| CDS CCA 90 bp | TTAGTCCTGGGGCCGCTTCTCCCCCGGACGCGTGCGAAGGCGGACTaGGTTCCGCTGCGGTCTCCACGGGAGCCACCGGTCCTTCAAGTG | + |
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Preference number: 5 (lower is better) Translates to: LVLGPLLPRTRAKAD*VPLRSPREPPVLQV Trigger: CACTTGAAGGACCGGTGGCTCCCGTGGAGACCGCAGCGGAACCCAGTCCGCCTTCGCACGCGTCCGGGGGAGAAGCGGCCCCAGGACTAA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000668297.1 |
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| CDS CCA 90 bp | CTTCCTGTATTTCTGAGAGGTGACAGCTTGCTGGCATCCCCTCGCTaGCTCTCGGCGCCTCCTCGGCCTCAGCCCACTCTGGCCGCGCTT | + |
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Preference number: 5 (lower is better) Translates to: LPVFLRGDSLLASPR*LSAPPRPQPTLAAL Trigger: AAGCGCGGCCAGAGTGGGCTGAGGCCGAGGAGGCGCCGAGAGCCAGCGAGGGGATGCCAGCAAGCTGTCACCTCTCAGAAATACAGGAAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000606878.2 ENST00000607607.5 ENST00000659035.1 ENST00000660952.1 ENST00000669756.1 ENST00000670365.1 |
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| CDS TCA 90 bp | AGGCGGACTGGGTTCCGCTGCGGTCTCCACGGGAGCCACCGGTCCTaGAAGCGCGGAGCATGCTTTGTTTGCGGAAACGAAAGCGAATAC | + |
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Preference number: 5 (lower is better) Translates to: RRTGFRCGLHGSHRS*KRGACFVCGNESEY Trigger: GTATTCGCTTTCGTTTCCGCAAACAAAGCATGCTCCGCGCTTTCAGGACCGGTGGCTCCCGTGGAGACCGCAGCGGAACCCAGTCCGCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000662403.1 ENST00000664092.1 ENST00000666341.1 |
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| CDS CCA 90 bp | TCACTCCTTACACAGCCTACACAGGAACATCCGGCGTGTTTGCTCTaGTCGTCACAGCACCGGTTCCTCGGGCGCGCGCCCTTAGTCCTG | + |
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Preference number: 5 (lower is better) Translates to: SLLTQPTQEHPACLL*SSQHRFLGRAPLVL Trigger: CAGGACTAAGGGCGCGCGCCCGAGGAACCGGTGCTGTGACGACCAGAGCAAACACGCCGGATGTTCCTGTGTAGGCTGTGTAAGGAGTGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000662403.1 ENST00000664092.1 ENST00000666341.1 ENST00000668297.1 |
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| CDS GCA 90 bp | TCACTCGCACACATACTGCCATATAAGTACCGCGCGCTAACCGATTaGGCCACTGGAGCACCCAGTTTCTACTTCCGGTCACTCCTTACA | + |
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Preference number: 5 (lower is better) Translates to: SLAHILPYKYRALTD*ATGAPSFYFRSLLT Trigger: TGTAAGGAGTGACCGGAAGTAGAAACTGGGTGCTCCAGTGGCGCAATCGGTTAGCGCGCGGTACTTATATGGCAGTATGTGTGCGAGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000662403.1 ENST00000664092.1 ENST00000666341.1 ENST00000668297.1 |
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| CDS CCA 90 bp | CCTCTGCAAACCATCGCAGTCTCTAGGTATTTGAACTTCTTAACATaGGAGCTGGCTTCTCCTAGAGCATCCAGAGGAGAGGTTGGTCCT | + |
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Preference number: 5 (lower is better) Translates to: PLQTIAVSRYLNFLT*ELASPRASRGEVGP Trigger: AGGACCAACCTCTCCTCTGGATGCTCTAGGAGAAGCCAGCTCCCATGTTAAGAAGTTCAAATACCTAGAGACTGCGATGGTTTGCAGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000420081.2 ENST00000669756.1 |
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| CDS CCA 90 bp | CATTTATTTCATACAGGCTTATTGGAGAAGTCAGCTGGTCTAGGCTaGGCTCAGCTGGATGGATCTTCTTCAATCTGTAGACAGCAGAGG | + |
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Preference number: 5 (lower is better) Translates to: HLFHTGLLEKSAGLG*AQLDGSSSICRQQR Trigger: CCTCTGCTGTCTACAGATTGAAGAAGATCCATCCAGCTGAGCCCAGCCTAGACCAGCTGACTTCTCCAATAAGCCTGTATGAAATAAATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 12 transcripts: ENST00000420081.2 ENST00000424968.6 ENST00000606878.2 ENST00000652085.1 ENST00000661007.1 ENST00000661575.1 ENST00000662403.1 ENST00000664092.1 ENST00000664178.1 ENST00000666341.1 ENST00000668297.1 ENST00000669756.1 |
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| CDS TCA 72 bp | CGCAGCTGCACCGTGGGAGCCCCTCTCTGTGCTGGCTaGGGCCTGAGCGGGCTCCCTCTGCCGGCGGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: RSCTVGAPLCAG*GLSGLPLPAGR Trigger: CCTCCCCGCCGGCAGAGGGAGCCCGCTCAGGCCTCAGCCAGCACAGAGAGGGGCTCCCACGGTGCAGCTGCG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000659035.1 ENST00000669756.1 |
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| CDS CCA 72 bp | GGGCCGCTTCTCCCCCGGACGCGTGCGAAGGCGGACTaGGTTCCGCTGCGGTCTCCACGGGAGCCACCGGTC | + |
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Preference number: 6 (lower is better) Translates to: GPLLPRTRAKAD*VPLRSPREPPV Trigger: GACCGGTGGCTCCCGTGGAGACCGCAGCGGAACCCAGTCCGCCTTCGCACGCGTCCGGGGGAGAAGCGGCCC 75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000662403.1 ENST00000664092.1 ENST00000666341.1 ENST00000668297.1 |
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| CDS CCA 72 bp | GCTGGCTCTCGGCGCCTCCTCGGCCTCAGCCCACTCTaGCCGCGCTTCAGGAGCCCTTCAGCCCGCAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: AGSRRLLGLSPL*PRFRSPSARSC Trigger: GCAGCTGCGGGCTGAAGGGCTCCTGAAGCGCGGCCAGAGTGGGCTGAGGCCGAGGAGGCGCCGAGAGCCAGC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000606878.2 ENST00000607607.5 ENST00000659035.1 ENST00000669756.1 |
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| CDS GCA 72 bp | GCCCTTAGTCCTGGGGCCGCTTCTCCCCCGGACGCGTaGGAAGGCGGACTGGGTTCCGCTGCGGTCTCCACG | + |
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Preference number: 6 (lower is better) Translates to: ALSPGAASPPDA*EGGLGSAAVST Trigger: CGTGGAGACCGCAGCGGAACCCAGTCCGCCTTCGCACGCGTCCGGGGGAGAAGCGGCCCCAGGACTAAGGGC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000662403.1 ENST00000664092.1 ENST00000666341.1 ENST00000668297.1 |
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| CDS GCA 72 bp | TTCAGCCCGCAGCTGCACCGTGGGAGCCCCTCTCTGTaGTGGCTGAGGCCTGAGCGGGCTCCCTCTGCCGGC | + |
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Preference number: 6 (lower is better) Translates to: FSPQLHRGSPSL*WLRPERAPSAG Trigger: GCCGGCAGAGGGAGCCCGCTCAGGCCTCAGCCAGCACAGAGAGGGGCTCCCACGGTGCAGCTGCGGGCTGAA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000659035.1 ENST00000669756.1 |
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| CDS GCA 72 bp | TCAAGTGGCCGCCGTGTGGGCGGGCTAGCGTCCCGCTaGTGCGCTGGTTCCGGAGCCCTTCCCTTGCCTCTC | + |
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Preference number: 6 (lower is better) Translates to: SSGRRVGGLASR*CAGSGALPLPL Trigger: GAGAGGCAAGGGAAGGGCTCCGGAACCAGCGCAGCAGCGGGACGCTAGCCCGCCCACACGGCGGCCACTTGA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000664092.1 ENST00000666341.1 ENST00000668297.1 |
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| CDS GCA 72 bp | TCCCCCGGACGCGTGCGAAGGCGGACTGGGTTCCGCTaGGGTCTCCACGGGAGCCACCGGTCCTTCAAGTGG | + |
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Preference number: 6 (lower is better) Translates to: SPGRVRRRTGFR*GLHGSHRSFKW Trigger: CCACTTGAAGGACCGGTGGCTCCCGTGGAGACCGCAGCGGAACCCAGTCCGCCTTCGCACGCGTCCGGGGGA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000668297.1 |
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| CDS CCA 72 bp | CCCACTGCCTCAGGTGTTCCCTGGAGGACCTTCAAGTaGCCGCCGTGTGGGCGGGCTAGCGTCCCGCTGCTG | + |
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Preference number: 6 (lower is better) Translates to: PTASGVPWRTFK*PPCGRASVPLL Trigger: CAGCAGCGGGACGCTAGCCCGCCCACACGGCGGCCACTTGAAGGTCCTCCAGGGAACACCTGAGGCAGTGGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000664092.1 ENST00000666341.1 |
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| CDS CCA 72 bp | TTTCTGAGAGGTGACAGCTTGCTGGCATCCCCTCGCTaGCTCTCGGCGCCTCCTCGGCCTCAGCCCACTCTG | + |
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Preference number: 6 (lower is better) Translates to: FLRGDSLLASPR*LSAPPRPQPTL Trigger: CAGAGTGGGCTGAGGCCGAGGAGGCGCCGAGAGCCAGCGAGGGGATGCCAGCAAGCTGTCACCTCTCAGAAA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000606878.2 ENST00000607607.5 ENST00000659035.1 ENST00000660952.1 ENST00000669756.1 ENST00000670365.1 |
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| CDS CCA 72 bp | ACACAGCCTACACAGGAACATCCGGCGTGTTTGCTCTaGTCGTCACAGCACCGGTTCCTCGGGCGCGCGCCC | + |
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Preference number: 6 (lower is better) Translates to: TQPTQEHPACLL*SSQHRFLGRAP Trigger: GGGCGCGCGCCCGAGGAACCGGTGCTGTGACGACCAGAGCAAACACGCCGGATGTTCCTGTGTAGGCTGTGT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000662403.1 ENST00000664092.1 ENST00000666341.1 ENST00000668297.1 |
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| CDS CCA 72 bp | TCTCCCAGCGTCGGAGGAAGGCCCGCAGTCTGCGAGTaGAGTGCGGGTGGTGGGAATCCCTGGGAGGATTAC | + |
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Preference number: 6 (lower is better) Translates to: SPSVGGRPAVCE*SAGGGNPWEDY Trigger: GTAATCCTCCCAGGGATTCCCACCACCCGCACTCCACTCGCAGACTGCGGGCCTTCCTCCGACGCTGGGAGA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668297.1 |
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| CDS CAA 90 bp | TTCCGGTCACTCCTTACACAGCCTACACAGGAACATCCGGCGTGTTaGCTCTGGTCGTCACAGCACCGGTTCCTCGGGCGCGCGCCCTTA | + |
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Preference number: 6 (lower is better) Translates to: FRSLLTQPTQEHPAC*LWSSQHRFLGRAPL Trigger: TAAGGGCGCGCGCCCGAGGAACCGGTGCTGTGACGACCAGAGCAAACACGCCGGATGTTCCTGTGTAGGCTGTGTAAGGAGTGACCGGAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000662403.1 ENST00000664092.1 ENST00000666341.1 ENST00000668297.1 |
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| CDS GCA 72 bp | TCCTTACACAGCCTACACAGGAACATCCGGCGTGTTTaGTCTGGTCGTCACAGCACCGGTTCCTCGGGCGCG | + |
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Preference number: 6 (lower is better) Translates to: SLHSLHRNIRRV*SGRHSTGSSGA Trigger: CGCGCCCGAGGAACCGGTGCTGTGACGACCAGAGCAAACACGCCGGATGTTCCTGTGTAGGCTGTGTAAGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000662403.1 ENST00000664092.1 ENST00000666341.1 ENST00000668297.1 |
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| CDS CAA 72 bp | CTCCTTACACAGCCTACACAGGAACATCCGGCGTGTTaGCTCTGGTCGTCACAGCACCGGTTCCTCGGGCGC | + |
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Preference number: 6 (lower is better) Translates to: LLTQPTQEHPAC*LWSSQHRFLGR Trigger: GCGCCCGAGGAACCGGTGCTGTGACGACCAGAGCAAACACGCCGGATGTTCCTGTGTAGGCTGTGTAAGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000662403.1 ENST00000664092.1 ENST00000666341.1 ENST00000668297.1 |
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| CDS CAA 72 bp | GGGAGCTGGCTTCTCCTAGAGCATCCAGAGGAGAGGTaGGTCCTGCAGACACCTTGTTTTCTGACTTCTGGC | + |
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Preference number: 6 (lower is better) Translates to: GSWLLLEHPEER*VLQTPCFLTSG Trigger: GCCAGAAGTCAGAAAACAAGGTGTCTGCAGGACCAACCTCTCCTCTGGATGCTCTAGGAGAAGCCAGCTCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000420081.2 ENST00000669756.1 |
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| CDS CAA 72 bp | ATTGATGTTCTTCCTGTATTTCTGAGAGGTGACAGCTaGCTGGCATCCCCTCGCTGGCTCTCGGCGCCTCCT | + |
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Preference number: 6 (lower is better) Translates to: IDVLPVFLRGDS*LASPRWLSAPP Trigger: AGGAGGCGCCGAGAGCCAGCGAGGGGATGCCAGCAAGCTGTCACCTCTCAGAAATACAGGAAGAACATCAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000606878.2 ENST00000607607.5 ENST00000659035.1 ENST00000660952.1 ENST00000669756.1 ENST00000670365.1 |
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| CDS CAA 90 bp | GCGGTCTCCACGGGAGCCACCGGTCCTGAAAGCGCGGAGCATGCTTaGTTTGCGGAAACGAAAGCGAATACTTCTTTCCAAGGAGACTTA | + |
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Preference number: 6 (lower is better) Translates to: AVSTGATGPESAEHA*FAETKANTSFQGDL Trigger: TAAGTCTCCTTGGAAAGAAGTATTCGCTTTCGTTTCCGCAAACAAAGCATGCTCCGCGCTTTCAGGACCGGTGGCTCCCGTGGAGACCGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000662403.1 ENST00000664092.1 ENST00000666341.1 |
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| CDS GCA 72 bp | CACATACTGCCATATAAGTACCGCGCGCTAACCGATTaGGCCACTGGAGCACCCAGTTTCTACTTCCGGTCA | + |
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Preference number: 6 (lower is better) Translates to: HILPYKYRALTD*ATGAPSFYFRS Trigger: TGACCGGAAGTAGAAACTGGGTGCTCCAGTGGCGCAATCGGTTAGCGCGCGGTACTTATATGGCAGTATGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000662403.1 ENST00000664092.1 ENST00000666341.1 ENST00000668297.1 |
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| CDS CAA 72 bp | GAGCCACCGGTCCTGAAAGCGCGGAGCATGCTTTGTTaGCGGAAACGAAAGCGAATACTTCTTTCCAAGGAG | + |
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Preference number: 6 (lower is better) Translates to: EPPVLKARSMLC*RKRKRILLSKE Trigger: CTCCTTGGAAAGAAGTATTCGCTTTCGTTTCCGCAAACAAAGCATGCTCCGCGCTTTCAGGACCGGTGGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000662403.1 ENST00000664092.1 ENST00000666341.1 |
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| CDS CAA 72 bp | ACGGGAGCCACCGGTCCTGAAAGCGCGGAGCATGCTTaGTTTGCGGAAACGAAAGCGAATACTTCTTTCCAA | + |
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Preference number: 6 (lower is better) Translates to: TGATGPESAEHA*FAETKANTSFQ Trigger: TTGGAAAGAAGTATTCGCTTTCGTTTCCGCAAACAAAGCATGCTCCGCGCTTTCAGGACCGGTGGCTCCCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000662403.1 ENST00000664092.1 ENST00000666341.1 |
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| CDS CAA 72 bp | AGTAGGCTCAGGCTTCTAGAGCATCCAGAGGAGAGGTaGGTCCTGCAGACACCTTGTTTTCTGACTTCTGGC | + |
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Preference number: 6 (lower is better) Translates to: SRLRLLEHPEER*VLQTPCFLTSG Trigger: GCCAGAAGTCAGAAAACAAGGTGTCTGCAGGACCAACCTCTCCTCTGGATGCTCTAGAAGCCTGAGCCTACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660952.1 |
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| CDS GCA 72 bp | CACTGCGGCGCAACGGATTTTGTTGGTAATTGGCGTTaGTTGGTTCTAAAAAGGAACCTCGGCATCACTCGC | + |
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Preference number: 6 (lower is better) Translates to: HCGATDFVGNWR*LVLKRNLGITR Trigger: GCGAGTGATGCCGAGGTTCCTTTTTAGAACCAAGCAACGCCAATTACCAACAAAATCCGTTGCGCCGCAGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000424968.6 |
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| CDS CAA 90 bp | CTAACTCACTGCGGCGCAACGGATTTTGTTGGTAATTGGCGTTGCTaGGTTCTAAAAAGGAACCTCGGCATCACTCGCACACATACTGCC | + |
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Preference number: 6 (lower is better) Translates to: LTHCGATDFVGNWRC*VLKRNLGITRTHTA Trigger: GGCAGTATGTGTGCGAGTGATGCCGAGGTTCCTTTTTAGAACCAAGCAACGCCAATTACCAACAAAATCCGTTGCGCCGCAGTGAGTTAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000424968.6 |
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| CDS CAA 90 bp | GCCTGGGCTAGAGCATCCAGAGGAGAGGTTGGTCCTGCAGACACCTaGTTTTCTGACTTCTGGCCTCCGCAATTTATAACTTCGAACATT | + |
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Preference number: 6 (lower is better) Translates to: AWARASRGEVGPADT*FSDFWPPQFITSNI Trigger: AATGTTCGAAGTTATAAATTGCGGAGGCCAGAAGTCAGAAAACAAGGTGTCTGCAGGACCAACCTCTCCTCTGGATGCTCTAGCCCAGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000606878.2 |
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| CDS CAA 72 bp | TGCGGCGCAACGGATTTTGTTGGTAATTGGCGTTGCTaGGTTCTAAAAAGGAACCTCGGCATCACTCGCACA | + |
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Preference number: 6 (lower is better) Translates to: CGATDFVGNWRC*VLKRNLGITRT Trigger: TGTGCGAGTGATGCCGAGGTTCCTTTTTAGAACCAAGCAACGCCAATTACCAACAAAATCCGTTGCGCCGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000424968.6 |
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| CDS TCA 72 bp | GGATGGAAGCAACCTAGGCCACCTTGCAGTGTAAGTTaGGTTAAGCAAGGAAGGCCTGACACTAAATTCAGC | + |
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Preference number: 6 (lower is better) Translates to: GWKQPRPPCSVS*VKQGRPDTKFS Trigger: GCTGAATTTAGTGTCAGGCCTTCCTTGCTTAACTCAACTTACACTGCAAGGTGGCCTAGGTTGCTTCCATCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654448.1 |
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| CDS CCA 72 bp | ACCATCGCAGTCTCTAGGTATTTGAACTTCTTAACATaGGAGCTGGCTTCTCCTAGAGCATCCAGAGGAGAG | + |
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Preference number: 6 (lower is better) Translates to: TIAVSRYLNFLT*ELASPRASRGE Trigger: CTCTCCTCTGGATGCTCTAGGAGAAGCCAGCTCCCATGTTAAGAAGTTCAAATACCTAGAGACTGCGATGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000420081.2 ENST00000669756.1 |
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| CDS CCA 72 bp | CTAACTCACTGCGGCGCAACGGATTTTGTTGGTAATTaGCGTTGCTTGGTTCTAAAAAGGAACCTCGGCATC | + |
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Preference number: 6 (lower is better) Translates to: LTHCGATDFVGN*RCLVLKRNLGI Trigger: GATGCCGAGGTTCCTTTTTAGAACCAAGCAACGCCAATTACCAACAAAATCCGTTGCGCCGCAGTGAGTTAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000424968.6 |
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| CDS CCA 72 bp | ACCATCGCAGTCTCTAGGTATTTGAACTTCTTAACATaGGAGCTGGCTTCTCCTGAGATCGACGTGCAGAAC | + |
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Preference number: 6 (lower is better) Translates to: TIAVSRYLNFLT*ELASPEIDVQN Trigger: GTTCTGCACGTCGATCTCAGGAGAAGCCAGCTCCCATGTTAAGAAGTTCAAATACCTAGAGACTGCGATGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000424968.6 ENST00000654448.1 ENST00000662403.1 ENST00000664092.1 ENST00000666341.1 ENST00000668297.1 |
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| CDS CAA 72 bp | CTTGAGCCTCTGCAAACCATCGCAGTCTCTAGGTATTaGAACTTCTTAACATGGGAGCTGGCTTCTCCTGAG | + |
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Preference number: 6 (lower is better) Translates to: LEPLQTIAVSRY*NFLTWELASPE Trigger: CTCAGGAGAAGCCAGCTCCCATGTTAAGAAGTTCAAATACCTAGAGACTGCGATGGTTTGCAGAGGCTCAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000424968.6 ENST00000654448.1 ENST00000662403.1 ENST00000664092.1 ENST00000666341.1 ENST00000668297.1 |
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| CDS CAA 72 bp | CTTGAGCCTCTGCAAACCATCGCAGTCTCTAGGTATTaGAACTTCTTAACATGGGAGCTGGCTTCTCGTGTC | + |
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Preference number: 6 (lower is better) Translates to: LEPLQTIAVSRY*NFLTWELASRV Trigger: GACACGAGAAGCCAGCTCCCATGTTAAGAAGTTCAAATACCTAGAGACTGCGATGGTTTGCAGAGGCTCAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664178.1 |
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| CDS CAA 90 bp | GCTTCTCCTAGAGCATCCAGAGGAGAGGTTGGTCCTGCAGACACCTaGTTTTCTGACTTCTGGCCTCCGCAATTTATAACTTCGAACATT | + |
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Preference number: 6 (lower is better) Translates to: ASPRASRGEVGPADT*FSDFWPPQFITSNI Trigger: AATGTTCGAAGTTATAAATTGCGGAGGCCAGAAGTCAGAAAACAAGGTGTCTGCAGGACCAACCTCTCCTCTGGATGCTCTAGGAGAAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000420081.2 ENST00000669756.1 |
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| CDS CAA 90 bp | CAGGCTTCTAGAGCATCCAGAGGAGAGGTTGGTCCTGCAGACACCTaGTTTTCTGACTTCTGGCCTCCGCAATTTATAACTTCGAACATT | + |
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Preference number: 6 (lower is better) Translates to: QASRASRGEVGPADT*FSDFWPPQFITSNI Trigger: AATGTTCGAAGTTATAAATTGCGGAGGCCAGAAGTCAGAAAACAAGGTGTCTGCAGGACCAACCTCTCCTCTGGATGCTCTAGAAGCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660952.1 |
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| CDS CAA 90 bp | ACGTTCCCTAGAGCATCCAGAGGAGAGGTTGGTCCTGCAGACACCTaGTTTTCTGACTTCTGGCCTCCGCAATTTATAACTTCGAACATT | + |
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Preference number: 6 (lower is better) Translates to: TFPRASRGEVGPADT*FSDFWPPQFITSNI Trigger: AATGTTCGAAGTTATAAATTGCGGAGGCCAGAAGTCAGAAAACAAGGTGTCTGCAGGACCAACCTCTCCTCTGGATGCTCTAGGGAACGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659035.1 |
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| CDS CAA 90 bp | GTCCACACTAGAGCATCCAGAGGAGAGGTTGGTCCTGCAGACACCTaGTTTTCTGACTTCTGGCCTCCGCAATTTATAACTTCGAACATT | + |
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Preference number: 6 (lower is better) Translates to: VHTRASRGEVGPADT*FSDFWPPQFITSNI Trigger: AATGTTCGAAGTTATAAATTGCGGAGGCCAGAAGTCAGAAAACAAGGTGTCTGCAGGACCAACCTCTCCTCTGGATGCTCTAGTGTGGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670365.1 |
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| CDS CAA 90 bp | AAACGCACTAGAGCATCCAGAGGAGAGGTTGGTCCTGCAGACACCTaGTTTTCTGACTTCTGGCCTCCGCAATTTATAACTTCGAACATT | + |
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Preference number: 6 (lower is better) Translates to: KRTRASRGEVGPADT*FSDFWPPQFITSNI Trigger: AATGTTCGAAGTTATAAATTGCGGAGGCCAGAAGTCAGAAAACAAGGTGTCTGCAGGACCAACCTCTCCTCTGGATGCTCTAGTGCGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000607607.5 |
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| CDS TCA 72 bp | GGGAGCTGGCTTCTCCTTAAAGGTAAAAGTGGAAGCTaGTATGTTTTCTTACTGCCTGGGCTAGAGCATCCA | + |
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Preference number: 6 (lower is better) Translates to: GSWLLLKGKSGS*YVFLLPGLEHP Trigger: TGGATGCTCTAGCCCAGGCAGTAAGAAAACATATCAGCTTCCACTTTTACCTTTAAGGAGAAGCCAGCTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000606878.2 |
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| CDS TCA 72 bp | GGGAGCTGGCTTCTCCTTAAAGGTAAAAGTGGAAGCTaGTATGTTTTCTTACTGCCTGGGCTGATGGGAGTT | + |
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Preference number: 6 (lower is better) Translates to: GSWLLLKGKSGS*YVFLLPGLMGV Trigger: AACTCCCATCAGCCCAGGCAGTAAGAAAACATATCAGCTTCCACTTTTACCTTTAAGGAGAAGCCAGCTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000661007.1 |
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| CDS CCA 72 bp | ACCATCGCAGTCTCTAGGTATTTGAACTTCTTAACATaGGAGCTGGCTTCTCGTGTCTATCCATTGGGGCAT | + |
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Preference number: 6 (lower is better) Translates to: TIAVSRYLNFLT*ELASRVYPLGH Trigger: ATGCCCCAATGGATAGACACGAGAAGCCAGCTCCCATGTTAAGAAGTTCAAATACCTAGAGACTGCGATGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664178.1 |
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| CDS CAA 72 bp | CTTGAGCCTCTGCAAACCATCGCAGTCTCTAGGTATTaGAACTTCTTAACATGGGAGCTGGCTTCTCCTAGA | + |
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Preference number: 6 (lower is better) Translates to: LEPLQTIAVSRY*NFLTWELASPR Trigger: TCTAGGAGAAGCCAGCTCCCATGTTAAGAAGTTCAAATACCTAGAGACTGCGATGGTTTGCAGAGGCTCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000420081.2 ENST00000669756.1 |
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| CDS CAA 72 bp | CTTGAGCCTCTGCAAACCATCGCAGTCTCTAGGTATTaGAACTTCTTAACATGGGAGCTGGCTTCTCCTGAT | + |
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Preference number: 6 (lower is better) Translates to: LEPLQTIAVSRY*NFLTWELASPD Trigger: ATCAGGAGAAGCCAGCTCCCATGTTAAGAAGTTCAAATACCTAGAGACTGCGATGGTTTGCAGAGGCTCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652085.1 |
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| CDS TCA 72 bp | GTATTTGAACTTCTTAACATGGGAGCTGGCTTCTCCTaGGATCGACGTGCAGAACAAAGTGGAGATAGAAGG | + |
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Preference number: 6 (lower is better) Translates to: VFELLNMGAGFS*DRRAEQSGDRR Trigger: CCTTCTATCTCCACTTTGTTCTGCACGTCGATCTCAGGAGAAGCCAGCTCCCATGTTAAGAAGTTCAAATAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000424968.6 ENST00000654448.1 ENST00000662403.1 ENST00000664092.1 ENST00000666341.1 ENST00000668297.1 |
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| CDS TCA 72 bp | GTATTTGAACTTCTTAACATGGGAGCTGGCTTCTCCTaGTGGGAGTTTCTTAGCACTAAGTATGTGCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: VFELLNMGAGFS*WEFLSTKYVPG Trigger: CCCTGGCACATACTTAGTGCTAAGAAACTCCCATCAGGAGAAGCCAGCTCCCATGTTAAGAAGTTCAAATAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652085.1 |
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| CDS TCA 72 bp | AAAGTGGAAGCTGATATGTTTTCTTACTGCCTGGGCTaGTGGGAGTTTCTTAGCACTAAGTATGTGCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: KVEADMFSYCLG*WEFLSTKYVPG Trigger: CCCTGGCACATACTTAGTGCTAAGAAACTCCCATCAGCCCAGGCAGTAAGAAAACATATCAGCTTCCACTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661007.1 |
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| CDS TCA 72 bp | GGGAGCTGGCTTCTCCTTAAAGGTAAAAGTGGAAGCTaGTATGTTTTCTTACTGCCTGGGCTGAGAAATCAC | + |
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Preference number: 6 (lower is better) Translates to: GSWLLLKGKSGS*YVFLLPGLRNH Trigger: GTGATTTCTCAGCCCAGGCAGTAAGAAAACATATCAGCTTCCACTTTTACCTTTAAGGAGAAGCCAGCTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000661575.1 |
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| CDS CCA 72 bp | CTAACTCACTGCGGCGCAACGGATTTTGTTGGTAATTaGCGTTGCTTGGTTCTAAAAAGGCTAAGGAAACCA | + |
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Preference number: 6 (lower is better) Translates to: LTHCGATDFVGN*RCLVLKRLRKP Trigger: TGGTTTCCTTAGCCTTTTTAGAACCAAGCAACGCCAATTACCAACAAAATCCGTTGCGCCGCAGTGAGTTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENST00000654448.1 ENST00000662403.1 ENST00000664092.1 ENST00000666341.1 ENST00000668297.1 |
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| CDS CCA 72 bp | TCGATGATCTGCGGCGCAACGGATTTTGTTGGTAATTaGCGTTGCTTGGTTCTAAAAAGGCTAAGGAAACCA | + |
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Preference number: 6 (lower is better) Translates to: SMICGATDFVGN*RCLVLKRLRKP Trigger: TGGTTTCCTTAGCCTTTTTAGAACCAAGCAACGCCAATTACCAACAAAATCCGTTGCGCCGCAGATCATCGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000652085.1 ENST00000661007.1 |
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| CDS CCA 72 bp | ACCATCGCAGTCTCTAGGTATTTGAACTTCTTAACATaGGAGCTGGCTTCTCCTGATGGGAGTTTCTTAGCA | + |
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Preference number: 6 (lower is better) Translates to: TIAVSRYLNFLT*ELASPDGSFLA Trigger: TGCTAAGAAACTCCCATCAGGAGAAGCCAGCTCCCATGTTAAGAAGTTCAAATACCTAGAGACTGCGATGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652085.1 |
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| CDS GCA 72 bp | CACTGCGGCGCAACGGATTTTGTTGGTAATTGGCGTTaGTTGGTTCTAAAAAGGCTAAGGAAACCAATAACA | + |
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Preference number: 6 (lower is better) Translates to: HCGATDFVGNWR*LVLKRLRKPIT Trigger: TGTTATTGGTTTCCTTAGCCTTTTTAGAACCAAGCAACGCCAATTACCAACAAAATCCGTTGCGCCGCAGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENST00000654448.1 ENST00000662403.1 ENST00000664092.1 ENST00000666341.1 ENST00000668297.1 |
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| CDS GCA 72 bp | GAGAAAATGTCAGCTGAGAGAATCATCAGACCACAGTaGAAGGATAGAGGGAAGAAGTTTGGATGGAAGCAA | + |
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Preference number: 6 (lower is better) Translates to: EKMSAERIIRPQ*KDRGKKFGWKQ Trigger: TTGCTTCCATCCAAACTTCTTCCCTCTATCCTTGCACTGTGGTCTGATGATTCTCTCAGCTGACATTTTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654448.1 |
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| CDS CAA 72 bp | AAGGAATATCTCTCCATGTCTTTCCATGTGGTTAGCTaGAGCCTCTGCAAACCATCGCAGTCTCTAGGTATT | + |
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Preference number: 6 (lower is better) Translates to: KEYLSMSFHVVS*SLCKPSQSLGI Trigger: AATACCTAGAGACTGCGATGGTTTGCAGAGGCTCAAGCTAACCACATGGAAAGACATGGAGAGATATTCCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 13 transcripts: ENST00000420081.2 ENST00000424968.6 ENST00000606878.2 ENST00000652085.1 ENST00000654448.1 ENST00000661007.1 ENST00000661575.1 ENST00000662403.1 ENST00000664092.1 ENST00000664178.1 ENST00000666341.1 ENST00000668297.1 ENST00000669756.1 |
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| CDS CAA 72 bp | TCAGCTGTCGGAGGAGTCCTTAGTCTCCCAGAAACTTaGTCTGTCTTAGTATCCCTTATGCACTCAGTTATT | + |
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Preference number: 6 (lower is better) Translates to: SAVGGVLSLPET*SVLVSLMHSVI Trigger: AATAACTGAGTGCATAAGGGATACTAAGACAGACAAAGTTTCTGGGAGACTAAGGACTCCTCCGACAGCTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654448.1 |
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| CDS TCA 72 bp | CACTCAGTTATTAGCTGGAAACAGTTCATGGGATACTaGGCCACAGCAAAAACACAACAAAGCACTTGGGAA | + |
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Preference number: 6 (lower is better) Translates to: HSVISWKQFMGY*ATAKTQQSTWE Trigger: TTCCCAAGTGCTTTGTTGTGTTTTTGCTGTGGCTCAGTATCCCATGAACTGTTTCCAGCTAATAACTGAGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000654448.1 |
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| CDS GCA 72 bp | ATCTGCGGCGCAACGGATTTTGTTGGTAATTGGCGTTaGTTGGTTCTAAAAAGGCTAAGGAAACCAATAACA | + |
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Preference number: 6 (lower is better) Translates to: ICGATDFVGNWR*LVLKRLRKPIT Trigger: TGTTATTGGTTTCCTTAGCCTTTTTAGAACCAAGCAACGCCAATTACCAACAAAATCCGTTGCGCCGCAGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000652085.1 ENST00000661007.1 |
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| CDS CAA 90 bp | ACACTAAATTCAGCTGTCGGAGGAGTCCTTAGTCTCCCAGAAACTTaGTCTGTCTTAGTATCCCTTATGCACTCAGTTATTAGCTGGAAA | + |
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Preference number: 6 (lower is better) Translates to: TLNSAVGGVLSLPET*SVLVSLMHSVISWK Trigger: TTTCCAGCTAATAACTGAGTGCATAAGGGATACTAAGACAGACAAAGTTTCTGGGAGACTAAGGACTCCTCCGACAGCTGAATTTAGTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654448.1 |
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| CDS CAA 90 bp | CTAACTCACTGCGGCGCAACGGATTTTGTTGGTAATTGGCGTTGCTaGGTTCTAAAAAGGCTAAGGAAACCAATAACAATAAACTGTGTA | + |
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Preference number: 6 (lower is better) Translates to: LTHCGATDFVGNWRC*VLKRLRKPITINCV Trigger: TACACAGTTTATTGTTATTGGTTTCCTTAGCCTTTTTAGAACCAAGCAACGCCAATTACCAACAAAATCCGTTGCGCCGCAGTGAGTTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENST00000654448.1 ENST00000662403.1 ENST00000664092.1 ENST00000666341.1 ENST00000668297.1 |
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| CDS CAA 90 bp | TCGATGATCTGCGGCGCAACGGATTTTGTTGGTAATTGGCGTTGCTaGGTTCTAAAAAGGCTAAGGAAACCAATAACAATAAACTGTGTA | + |
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Preference number: 6 (lower is better) Translates to: SMICGATDFVGNWRC*VLKRLRKPITINCV Trigger: TACACAGTTTATTGTTATTGGTTTCCTTAGCCTTTTTAGAACCAAGCAACGCCAATTACCAACAAAATCCGTTGCGCCGCAGATCATCGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000652085.1 ENST00000661007.1 |
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| CDS CAA 72 bp | ATCTTCATTTCCAGGTCACTCATATACTGTTTAACTTaGAGAAGCACTGCTGTATATTGTCTTGAGAGTCCA | + |
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Preference number: 6 (lower is better) Translates to: IFISRSLIYCLT*RSTAVYCLESP Trigger: TGGACTCTCAAGACAATATACAGCAGTGCTTCTCAAAGTTAAACAGTATATGAGTGACCTGGAAATGAAGAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000607607.5 ENST00000670365.1 |
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