Pregenerated sensors for LINC00222 (Homo sapiens)
Ensembl gene IDs: ENSG00000203801Ensembl transcript IDs: ENST00000368974.7, ENST00000416104.5, ENST00000416890.5, ENST00000417773.5, ENST00000430898.1, ENST00000444910.5, ENST00000448744.5
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GACTGGGACCCCACCCCCTTCACACGGCCATGGGCTCCACACTCGTaGTCTGTGGGACATGCACAGCTCTTCCGGGCCCAGCATGTGCCC | + |
|
Preference number: 5 (lower is better) Translates to: DWDPTPFTRPWAPHS*SVGHAQLFRAQHVP Trigger: GGGCACATGCTGGGCCCGGAAGAGCTGTGCATGTCCCACAGACCACGAGTGTGGAGCCCATGGCCGTGTGAAGGGGGTGGGGTCCCAGTC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000368974.7 ENST00000417773.5 ENST00000444910.5 ENST00000448744.5 |
||
| CDS CCA 90 bp | ACCCCACCCCCTTCACACGGCCATGGGCTCCACACTCGTGGTCTGTaGGACATGCACAGCTCTTCCGGGCCCAGCATGTGCCCATCCATG | + |
|
Preference number: 5 (lower is better) Translates to: TPPPSHGHGLHTRGL*DMHSSSGPSMCPSM Trigger: CATGGATGGGCACATGCTGGGCCCGGAAGAGCTGTGCATGTCCCACAGACCACGAGTGTGGAGCCCATGGCCGTGTGAAGGGGGTGGGGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000368974.7 ENST00000417773.5 ENST00000444910.5 ENST00000448744.5 |
||
| CDS GCA 90 bp | CCCCTTCACACGGCCATGGGCTCCACACTCGTGGTCTGTGGGACATaGACAGCTCTTCCGGGCCCAGCATGTGCCCATCCATGTGTTCTC | + |
|
Preference number: 5 (lower is better) Translates to: PLHTAMGSTLVVCGT*TALPGPACAHPCVL Trigger: GAGAACACATGGATGGGCACATGCTGGGCCCGGAAGAGCTGTGCATGTCCCACAGACCACGAGTGTGGAGCCCATGGCCGTGTGAAGGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000368974.7 ENST00000417773.5 ENST00000444910.5 ENST00000448744.5 |
||
| CDS GCA 90 bp | CTGCGGTTCCCCTGGTCTTCTCTGTGTGGGAGCAGCAGTGGATTCTaGCCAGAGCTGTGGAGCCAGTTCCTCTTTGCCAGATCAGACCCA | + |
|
Preference number: 5 (lower is better) Translates to: LRFPWSSLCGSSSGF*PELWSQFLFARSDP Trigger: TGGGTCTGATCTGGCAAAGAGGAACTGGCTCCACAGCTCTGGGCAGAATCCACTGCTGCTCCCACACAGAGAAGACCAGGGGAACCGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000368974.7 ENST00000416890.5 ENST00000417773.5 ENST00000430898.1 ENST00000444910.5 ENST00000448744.5 |
||
| CDS GCA 90 bp | CTACCCCTTCACCACCACCCATGCAACACTTGGAGCCAGAGATTTTaGTCAAGGTCACAGTGGGCAGGAAGTGGCTGGGCAGGGATCTTT | + |
|
Preference number: 5 (lower is better) Translates to: LPLHHHPCNTWSQRF*SRSQWAGSGWAGIF Trigger: AAAGATCCCTGCCCAGCCACTTCCTGCCCACTGTGACCTTGAGCAAAATCTCTGGCTCCAAGTGTTGCATGGGTGGTGGTGAAGGGGTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000416104.5 |
||
| CDS CCA 90 bp | CATGTGCCCATCCATGTGTTCTCTTCCTTCTGTTACCTGAAGTCTTaGCAAGGGTTGGGCATGAGGAACAGGGGGACGAGCAGAGTGGGA | + |
|
Preference number: 5 (lower is better) Translates to: HVPIHVFSSFCYLKS*QGLGMRNRGTSRVG Trigger: TCCCACTCTGCTCGTCCCCCTGTTCCTCATGCCCAACCCTTGCCAAGACTTCAGGTAACAGAAGGAAGAGAACACATGGATGGGCACATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000417773.5 |
||
| CDS CCA 90 bp | TGGAGCCAGAGATTTTGCTCAAGGTCACAGTGGGCAGGAAGTGGCTaGGCAGGGATCTTTCTAGAATCCACTCTCCTTCCACAAGGCCAA | + |
|
Preference number: 5 (lower is better) Translates to: WSQRFCSRSQWAGSG*AGIFLESTLLPQGQ Trigger: TTGGCCTTGTGGAAGGAGAGTGGATTCTAGAAAGATCCCTGCCCAGCCACTTCCTGCCCACTGTGACCTTGAGCAAAATCTCTGGCTCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416104.5 |
||
| CDS CCA 90 bp | CACTTGGAGCCAGAGATTTTGCTCAAGGTCACAGTGGGCAGGAAGTaGCTGGGCAGGGATCTTTCTAGAATCCACTCTCCTTCCACAAGG | + |
|
Preference number: 5 (lower is better) Translates to: HLEPEILLKVTVGRK*LGRDLSRIHSPSTR Trigger: CCTTGTGGAAGGAGAGTGGATTCTAGAAAGATCCCTGCCCAGCCACTTCCTGCCCACTGTGACCTTGAGCAAAATCTCTGGCTCCAAGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416104.5 |
||
| CDS GCA 90 bp | GACAAACCCACTCAAGTTTCCTTGCTACCCCTTCACCACCACCCATaGAACACTTGGAGCCAGAGATTTTGCTCAAGGTCACAGTGGGCA | + |
|
Preference number: 5 (lower is better) Translates to: DKPTQVSLLPLHHHP*NTWSQRFCSRSQWA Trigger: TGCCCACTGTGACCTTGAGCAAAATCTCTGGCTCCAAGTGTTGCATGGGTGGTGGTGAAGGGGTAGCAAGGAAACTTGAGTGGGTTTGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000416104.5 |
||
| CDS CCA 90 bp | CATGTGCCCATCCATGTGTTCTCTTCCTTCTGTTACCTGAAGTCTTaGCAAGGGTTGGGCATGAGGAACAGGGGGACGAGCTGGGTTTTA | + |
|
Preference number: 5 (lower is better) Translates to: HVPIHVFSSFCYLKS*QGLGMRNRGTSWVL Trigger: TAAAACCCAGCTCGTCCCCCTGTTCCTCATGCCCAACCCTTGCCAAGACTTCAGGTAACAGAAGGAAGAGAACACATGGATGGGCACATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000368974.7 ENST00000430898.1 ENST00000448744.5 |
||
| CDS CCA 90 bp | CTGAAGTCTTGGCAAGGGTTGGGCATGAGGAACAGGGGGACGAGCTaGGTTTTATTCCTTCATTGTTGCCACTTTCCTTTGCTCTCACTA | + |
|
Preference number: 5 (lower is better) Translates to: LKSWQGLGMRNRGTS*VLFLHCCHFPLLSL Trigger: TAGTGAGAGCAAAGGAAAGTGGCAACAATGAAGGAATAAAACCCAGCTCGTCCCCCTGTTCCTCATGCCCAACCCTTGCCAAGACTTCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000368974.7 ENST00000430898.1 ENST00000448744.5 |
||
| CDS CCA 90 bp | CAGTGTCTGAGCAAGAGTTGTGTGTATGAGAAGGAGTGGCACGTCTaGAAGCATAATCAGGAAAATCAGCTGCACCTCCTAGCACAGGTG | + |
|
Preference number: 5 (lower is better) Translates to: QCLSKSCVYEKEWHV*KHNQENQLHLLAQV Trigger: CACCTGTGCTAGGAGGTGCAGCTGATTTTCCTGATTATGCTTCCAGACGTGCCACTCCTTCTCATACACACAACTCTTGCTCAGACACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416104.5 |
||
| CDS CCA 90 bp | TCACAGCCACATCCAGTGTCTAAATCCACATCACCTAAAAGTACCTaGAAGATCATAGGCTTCCTCGTCAGGTCCTCCAAGGCCACTTCC | + |
|
Preference number: 5 (lower is better) Translates to: SQPHPVSKSTSPKST*KIIGFLVRSSKATS Trigger: GGAAGTGGCCTTGGAGGACCTGACGAGGAAGCCTATGATCTTCCAGGTACTTTTAGGTGATGTGGATTTAGACACTGGATGTGGCTGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000448744.5 |
||
| CDS TCA 90 bp | AACGCAGGTTTTGACTGTACCTTACAGGAAGTACAGGACAGTGTCTaGGCAAGAGTTGTGTGTATGAGAAGGAGTGGCACGTCTGGAAGC | + |
|
Preference number: 5 (lower is better) Translates to: NAGFDCTLQEVQDSV*ARVVCMRRSGTSGS Trigger: GCTTCCAGACGTGCCACTCCTTCTCATACACACAACTCTTGCTCAGACACTGTCCTGTACTTCCTGTAAGGTACAGTCAAAACCTGCGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416104.5 |
||
| CDS GCA 90 bp | GGCATGAGGAACAGGGGGACGAGCTGGGTTTTATTCCTTCATTGTTaGCACTTTCCTTTGCTCTCACTATCTCCTCAACAGGACAAGAAC | + |
|
Preference number: 5 (lower is better) Translates to: GMRNRGTSWVLFLHC*HFPLLSLSPQQDKN Trigger: GTTCTTGTCCTGTTGAGGAGATAGTGAGAGCAAAGGAAAGTGGCAACAATGAAGGAATAAAACCCAGCTCGTCCCCCTGTTCCTCATGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000368974.7 ENST00000448744.5 |
||
| CDS TCA 90 bp | TCCTTTGGCCTAATCCTCTTAAGAGCTGTTGAAGCCTCCCTGAATTaGTCAGAGGCAGTCAAGTGCCTTCTTAAGACAGGAGGCTCTTTC | + |
|
Preference number: 5 (lower is better) Translates to: SFGLILLRAVEASLN*SEAVKCLLKTGGSF Trigger: GAAAGAGCCTCCTGTCTTAAGAAGGCACTTGACTGCCTCTGATCAATTCAGGGAGGCTTCAACAGCTCTTAAGAGGATTAGGCCAAAGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416104.5 |
||
| CDS TCA 90 bp | GTTGTCAGCAACTCCCAGAACTATACTGTCTCAGGTCCACATCCATaGGAAAAAGACTGTCTGTTTCAGGATACCTGGGAAAAGTCCTAT | + |
|
Preference number: 5 (lower is better) Translates to: VVSNSQNYTVSGPHP*EKDCLFQDTWEKSY Trigger: ATAGGACTTTTCCCAGGTATCCTGAAACAGACAGTCTTTTTCTCATGGATGTGGACCTGAGACAGTATAGTTCTGGGAGTTGCTGACAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000448744.5 |
||
| CDS GCA 90 bp | TTTCCACAATTCAGGATCCAATTTATCTCCATCTGTTCCACTTCCTaGTTGTTGAAGCCAATCTCAAATCAGCTCATGACCATAAGATGG | + |
|
Preference number: 5 (lower is better) Translates to: FPQFRIQFISICSTS*LLKPISNQLMTIRW Trigger: CCATCTTATGGTCATGAGCTGATTTGAGATTGGCTTCAACAAGCAGGAAGTGGAACAGATGGAGATAAATTGGATCCTGAATTGTGGAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000448744.5 |
||
| CDS CCA 72 bp | CCCACCCCCTTCACACGGCCATGGGCTCCACACTCGTaGTCTGTGGGACATGCACAGCTCTTCCGGGCCCAG | + |
|
Preference number: 6 (lower is better) Translates to: PTPFTRPWAPHS*SVGHAQLFRAQ Trigger: CTGGGCCCGGAAGAGCTGTGCATGTCCCACAGACCACGAGTGTGGAGCCCATGGCCGTGTGAAGGGGGTGGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000368974.7 ENST00000417773.5 ENST00000444910.5 ENST00000448744.5 |
||
| CDS GCA 72 bp | ACGGCCATGGGCTCCACACTCGTGGTCTGTGGGACATaGACAGCTCTTCCGGGCCCAGCATGTGCCCATCCA | + |
|
Preference number: 6 (lower is better) Translates to: TAMGSTLVVCGT*TALPGPACAHP Trigger: TGGATGGGCACATGCTGGGCCCGGAAGAGCTGTGCATGTCCCACAGACCACGAGTGTGGAGCCCATGGCCGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000368974.7 ENST00000417773.5 ENST00000444910.5 ENST00000448744.5 |
||
| CDS CCA 72 bp | CCTTCACACGGCCATGGGCTCCACACTCGTGGTCTGTaGGACATGCACAGCTCTTCCGGGCCCAGCATGTGC | + |
|
Preference number: 6 (lower is better) Translates to: PSHGHGLHTRGL*DMHSSSGPSMC Trigger: GCACATGCTGGGCCCGGAAGAGCTGTGCATGTCCCACAGACCACGAGTGTGGAGCCCATGGCCGTGTGAAGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000368974.7 ENST00000417773.5 ENST00000444910.5 ENST00000448744.5 |
||
| CDS CCA 72 bp | GCGGTTCCCCTGGTCTTCTCTGTGTGGGAGCAGCAGTaGATTCTGCCCAGAGCTGTGGAGCCAGTTCCTCTT | + |
|
Preference number: 6 (lower is better) Translates to: AVPLVFSVWEQQ*ILPRAVEPVPL Trigger: AAGAGGAACTGGCTCCACAGCTCTGGGCAGAATCCACTGCTGCTCCCACACAGAGAAGACCAGGGGAACCGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000368974.7 ENST00000416890.5 ENST00000417773.5 ENST00000430898.1 ENST00000444910.5 ENST00000448744.5 |
||
| CDS CAA 90 bp | GCTACCCCTTCACCACCACCCATGCAACACTTGGAGCCAGAGATTTaGCTCAAGGTCACAGTGGGCAGGAAGTGGCTGGGCAGGGATCTT | + |
|
Preference number: 6 (lower is better) Translates to: ATPSPPPMQHLEPEI*LKVTVGRKWLGRDL Trigger: AAGATCCCTGCCCAGCCACTTCCTGCCCACTGTGACCTTGAGCAAAATCTCTGGCTCCAAGTGTTGCATGGGTGGTGGTGAAGGGGTAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416104.5 |
||
| CDS GCA 72 bp | TGGACAACATGGCGAAACTCCATCTCAGAGTGGGACTaGGGTTCCCCTGGTCTTCTCTGTGTGGGAGCAGCA | + |
|
Preference number: 6 (lower is better) Translates to: WTTWRNSISEWD*GSPGLLCVGAA Trigger: TGCTGCTCCCACACAGAGAAGACCAGGGGAACCGCAGTCCCACTCTGAGATGGAGTTTCGCCATGTTGTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416890.5 |
||
| CDS CAA 72 bp | TTATGTGCCTTGCGAGCCAAGGCCAGTGTTACCTTGTaGCTGGCCAGTGTAACAAGGGGGACCTTGGGCCAC | + |
|
Preference number: 6 (lower is better) Translates to: LCALRAKASVTL*LASVTRGTLGH Trigger: GTGGCCCAAGGTCCCCCTTGTTACACTGGCCAGCAACAAGGTAACACTGGCCTTGGCTCGCAAGGCACATAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000368974.7 ENST00000417773.5 |
||
| CDS CAA 72 bp | GGTTTATGTGCCTTGCGAGCCAAGGCCAGTGTTACCTaGTTGCTGGCCAGTGTAACAAGGGGGACCTTGGGC | + |
|
Preference number: 6 (lower is better) Translates to: GLCALRAKASVT*LLASVTRGTLG Trigger: GCCCAAGGTCCCCCTTGTTACACTGGCCAGCAACAAGGTAACACTGGCCTTGGCTCGCAAGGCACATAAACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000368974.7 ENST00000417773.5 |
||
| CDS CAA 72 bp | GATCCCCCAACCCTCAGCGGTGTTGACTGCAGCATCTaGTGTGGTTTATGTGCCTTGCGAGCCAAGGCCAGT | + |
|
Preference number: 6 (lower is better) Translates to: DPPTLSGVDCSI*CGLCALRAKAS Trigger: ACTGGCCTTGGCTCGCAAGGCACATAAACCACACAAGATGCTGCAGTCAACACCGCTGAGGGTTGGGGGATC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000368974.7 ENST00000417773.5 |
||
| CDS CAA 72 bp | GTGGATTCTGCCCAGAGCTGTGGAGCCAGTTCCTCTTaGCCAGATCAGACCCAGCCTAGCACACAGCTGGAA | + |
|
Preference number: 6 (lower is better) Translates to: VDSAQSCGASSS*PDQTQPSTQLE Trigger: TTCCAGCTGTGTGCTAGGCTGGGTCTGATCTGGCAAAGAGGAACTGGCTCCACAGCTCTGGGCAGAATCCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000368974.7 ENST00000416890.5 ENST00000417773.5 ENST00000430898.1 ENST00000444910.5 ENST00000448744.5 |
||
| CDS CAA 90 bp | TTGTGTGGTTTATGTGCCTTGCGAGCCAAGGCCAGTGTTACCTTGTaGCTGGCCAGTGTAACAAGGGGGACCTTGGGCCACCAGCCTGAA | + |
|
Preference number: 6 (lower is better) Translates to: LCGLCALRAKASVTL*LASVTRGTLGHQPE Trigger: TTCAGGCTGGTGGCCCAAGGTCCCCCTTGTTACACTGGCCAGCAACAAGGTAACACTGGCCTTGGCTCGCAAGGCACATAAACCACACAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000368974.7 ENST00000417773.5 |
||
| CDS CAA 90 bp | ATCTTGTGTGGTTTATGTGCCTTGCGAGCCAAGGCCAGTGTTACCTaGTTGCTGGCCAGTGTAACAAGGGGGACCTTGGGCCACCAGCCT | + |
|
Preference number: 6 (lower is better) Translates to: ILCGLCALRAKASVT*LLASVTRGTLGHQP Trigger: AGGCTGGTGGCCCAAGGTCCCCCTTGTTACACTGGCCAGCAACAAGGTAACACTGGCCTTGGCTCGCAAGGCACATAAACCACACAAGAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000368974.7 ENST00000417773.5 |
||
| CDS CAA 90 bp | GCATGTGCCCATCCATGTGTTCTCTTCCTTCTGTTACCTGAAGTCTaGGCAAGGGTTGGGCATGAGGAACAGGGGGACGAGCAGAGTGGG | + |
|
Preference number: 6 (lower is better) Translates to: ACAHPCVLFLLLPEV*ARVGHEEQGDEQSG Trigger: CCCACTCTGCTCGTCCCCCTGTTCCTCATGCCCAACCCTTGCCAAGACTTCAGGTAACAGAAGGAAGAGAACACATGGATGGGCACATGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000417773.5 |
||
| CDS CAA 90 bp | ATCCATGTGTTCTCTTCCTTCTGTTACCTGAAGTCTTGGCAAGGGTaGGGCATGAGGAACAGGGGGACGAGCAGAGTGGGACTGCGGTTC | + |
|
Preference number: 6 (lower is better) Translates to: IHVFSSFCYLKSWQG*GMRNRGTSRVGLRF Trigger: GAACCGCAGTCCCACTCTGCTCGTCCCCCTGTTCCTCATGCCCAACCCTTGCCAAGACTTCAGGTAACAGAAGGAAGAGAACACATGGAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000417773.5 |
||
| CDS TCA 72 bp | GGGGAGGGAGTCCAGATGAAACCCAACTGTGGGTTATaGGGAACAACCACGTGGCTGTGTTGTCACAGGTCT | + |
|
Preference number: 6 (lower is better) Translates to: GEGVQMKPNCGL*GTTTWLCCHRS Trigger: AGACCTGTGACAACACAGCCACGTGGTTGTTCCTCATAACCCACAGTTGGGTTTCATCTGGACTCCCTCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416104.5 |
||
| CDS CAA 72 bp | TTCTCTTCCTTCTGTTACCTGAAGTCTTGGCAAGGGTaGGGCATGAGGAACAGGGGGACGAGCAGAGTGGGA | + |
|
Preference number: 6 (lower is better) Translates to: FSSFCYLKSWQG*GMRNRGTSRVG Trigger: TCCCACTCTGCTCGTCCCCCTGTTCCTCATGCCCAACCCTTGCCAAGACTTCAGGTAACAGAAGGAAGAGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000417773.5 |
||
| CDS CAA 90 bp | GCATGTGCCCATCCATGTGTTCTCTTCCTTCTGTTACCTGAAGTCTaGGCAAGGGTTGGGCATGAGGAACAGGGGGACGAGCTGGGTTTT | + |
|
Preference number: 6 (lower is better) Translates to: ACAHPCVLFLLLPEV*ARVGHEEQGDELGF Trigger: AAAACCCAGCTCGTCCCCCTGTTCCTCATGCCCAACCCTTGCCAAGACTTCAGGTAACAGAAGGAAGAGAACACATGGATGGGCACATGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000368974.7 ENST00000430898.1 ENST00000448744.5 |
||
| CDS CCA 72 bp | CCAGAGATTTTGCTCAAGGTCACAGTGGGCAGGAAGTaGCTGGGCAGGGATCTTTCTAGAATCCACTCTCCT | + |
|
Preference number: 6 (lower is better) Translates to: PEILLKVTVGRK*LGRDLSRIHSP Trigger: AGGAGAGTGGATTCTAGAAAGATCCCTGCCCAGCCACTTCCTGCCCACTGTGACCTTGAGCAAAATCTCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416104.5 |
||
| CDS CAA 72 bp | CATCCATGTGTTCTCTTCCTTCTGTTACCTGAAGTCTaGGCAAGGGTTGGGCATGAGGAACAGGGGGACGAG | + |
|
Preference number: 6 (lower is better) Translates to: HPCVLFLLLPEV*ARVGHEEQGDE Trigger: CTCGTCCCCCTGTTCCTCATGCCCAACCCTTGCCAAGACTTCAGGTAACAGAAGGAAGAGAACACATGGATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000368974.7 ENST00000417773.5 ENST00000430898.1 ENST00000448744.5 |
||
| CDS CAA 90 bp | GGGCATGAGGAACAGGGGGACGAGCTGGGTTTTATTCCTTCATTGTaGCCACTTTCCTTTGCTCTCACTATCAGAGTGGGACTGCGGTTC | + |
|
Preference number: 6 (lower is better) Translates to: GHEEQGDELGFIPSL*PLSFALTIRVGLRF Trigger: GAACCGCAGTCCCACTCTGATAGTGAGAGCAAAGGAAAGTGGCAACAATGAAGGAATAAAACCCAGCTCGTCCCCCTGTTCCTCATGCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000430898.1 |
||
| CDS CCA 72 bp | CAGTCACATCCTCTTCACTTCACAATTACAGATAGCTaGATCCCCCAACCCTCAGCGGTGTTGACTGCAGCA | + |
|
Preference number: 6 (lower is better) Translates to: QSHPLHFTITDS*IPQPSAVLTAA Trigger: TGCTGCAGTCAACACCGCTGAGGGTTGGGGGATCCAGCTATCTGTAATTGTGAAGTGAAGAGGATGTGACTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000368974.7 ENST00000417773.5 |
||
| CDS CCA 72 bp | AGATTTTGCTCAAGGTCACAGTGGGCAGGAAGTGGCTaGGCAGGGATCTTTCTAGAATCCACTCTCCTTCCA | + |
|
Preference number: 6 (lower is better) Translates to: RFCSRSQWAGSG*AGIFLESTLLP Trigger: TGGAAGGAGAGTGGATTCTAGAAAGATCCCTGCCCAGCCACTTCCTGCCCACTGTGACCTTGAGCAAAATCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416104.5 |
||
| CDS CAA 72 bp | TTCTCTTCCTTCTGTTACCTGAAGTCTTGGCAAGGGTaGGGCATGAGGAACAGGGGGACGAGCTGGGTTTTA | + |
|
Preference number: 6 (lower is better) Translates to: FSSFCYLKSWQG*GMRNRGTSWVL Trigger: TAAAACCCAGCTCGTCCCCCTGTTCCTCATGCCCAACCCTTGCCAAGACTTCAGGTAACAGAAGGAAGAGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000368974.7 ENST00000430898.1 ENST00000448744.5 |
||
| CDS CAA 72 bp | ACTGCTCCTAGTTCTGACAAACCCACTCAAGTTTCCTaGCTACCCCTTCACCACCACCCATGCAACACTTGG | + |
|
Preference number: 6 (lower is better) Translates to: TAPSSDKPTQVS*LPLHHHPCNTW Trigger: CCAAGTGTTGCATGGGTGGTGGTGAAGGGGTAGCAAGGAAACTTGAGTGGGTTTGTCAGAACTAGGAGCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416104.5 |
||
| CDS TCA 72 bp | TGCACAATCACAATGGGTGCAGGCTGCAGAGGCCTCTaGAAAACGCAGGTTTTGACTGTACCTTACAGGAAG | + |
|
Preference number: 6 (lower is better) Translates to: CTITMGAGCRGL*KTQVLTVPYRK Trigger: CTTCCTGTAAGGTACAGTCAAAACCTGCGTTTTTCAGAGGCCTCTGCAGCCTGCACCCATTGTGATTGTGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000416104.5 |
||
| CDS CCA 72 bp | ACTGACAGCGTTAGTGGAAGTTCCCAAGCAGGAAGCTaGGGCGTGATTAAATGGATGCCGGACAACCAAAAA | + |
|
Preference number: 6 (lower is better) Translates to: TDSVSGSSQAGS*GVIKWMPDNQK Trigger: TTTTTGGTTGTCCGGCATCCATTTAATCACGCCCCAGCTTCCTGCTTGGGAACTTCCACTAACGCTGTCAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000448744.5 |
||
| CDS CAA 90 bp | CCCAGACAGATCATTGTAAACCTCTTGTTCCACCCCAAGTGTTGTTaGTGTGTAACACGTGTCAAGGGTTTCCACTCAGAGTGGGACTGC | + |
|
Preference number: 6 (lower is better) Translates to: PRQIIVNLLFHPKCC*CVTRVKGFHSEWDC Trigger: GCAGTCCCACTCTGAGTGGAAACCCTTGACACGTGTTACACACAAACAACACTTGGGGTGGAACAAGAGGTTTACAATGATCTGTCTGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000368974.7 ENST00000448744.5 |
||
| CDS CAA 90 bp | GGGCATGAGGAACAGGGGGACGAGCTGGGTTTTATTCCTTCATTGTaGCCACTTTCCTTTGCTCTCACTATCTCCTCAACAGGACAAGAA | + |
|
Preference number: 6 (lower is better) Translates to: GHEEQGDELGFIPSL*PLSFALTISSTGQE Trigger: TTCTTGTCCTGTTGAGGAGATAGTGAGAGCAAAGGAAAGTGGCAACAATGAAGGAATAAAACCCAGCTCGTCCCCCTGTTCCTCATGCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000368974.7 ENST00000448744.5 |
||
| CDS CAA 90 bp | ATCCATGTGTTCTCTTCCTTCTGTTACCTGAAGTCTTGGCAAGGGTaGGGCATGAGGAACAGGGGGACGAGCTGGGTTTTATTCCTTCAT | + |
|
Preference number: 6 (lower is better) Translates to: IHVFSSFCYLKSWQG*GMRNRGTSWVLFLH Trigger: ATGAAGGAATAAAACCCAGCTCGTCCCCCTGTTCCTCATGCCCAACCCTTGCCAAGACTTCAGGTAACAGAAGGAAGAGAACACATGGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000368974.7 ENST00000430898.1 ENST00000448744.5 |
||
| CDS CAA 90 bp | AGTTTTCTTACTGCTCCTAGTTCTGACAAACCCACTCAAGTTTCCTaGCTACCCCTTCACCACCACCCATGCAACACTTGGAGCCAGAGA | + |
|
Preference number: 6 (lower is better) Translates to: SFLTAPSSDKPTQVS*LPLHHHPCNTWSQR Trigger: TCTCTGGCTCCAAGTGTTGCATGGGTGGTGGTGAAGGGGTAGCAAGGAAACTTGAGTGGGTTTGTCAGAACTAGGAGCAGTAAGAAAACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000416104.5 |
||
| CDS TCA 72 bp | CGTGTCAAGGGTTTCCACTCGATCTTCCAGCTCACTTaGTTTACTTGGAACAGACTCACACTCAAGGGTGAC | + |
|
Preference number: 6 (lower is better) Translates to: RVKGFHSIFQLT*FTWNRLTLKGD Trigger: GTCACCCTTGAGTGTGAGTCTGTTCCAAGTAAATCAAGTGAGCTGGAAGATCGAGTGGAAACCCTTGACACG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416890.5 |
||
| CDS CAA 90 bp | GATGAAACCCAACTGTGGGTTATGAGGAACAACCACGTGGCTGTGTaGTCACAGGTCTTTTCCTCCCCAAATGCAAATACGCCCATTAGT | + |
|
Preference number: 6 (lower is better) Translates to: DETQLWVMRNNHVAV*SQVFSSPNANTPIS Trigger: ACTAATGGGCGTATTTGCATTTGGGGAGGAAAAGACCTGTGACAACACAGCCACGTGGTTGTTCCTCATAACCCACAGTTGGGTTTCATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000416104.5 |
||
| CDS TCA 72 bp | TTTGACTGTACCTTACAGGAAGTACAGGACAGTGTCTaGGCAAGAGTTGTGTGTATGAGAAGGAGTGGCACG | + |
|
Preference number: 6 (lower is better) Translates to: FDCTLQEVQDSV*ARVVCMRRSGT Trigger: CGTGCCACTCCTTCTCATACACACAACTCTTGCTCAGACACTGTCCTGTACTTCCTGTAAGGTACAGTCAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000416104.5 |
||
| CDS CCA 72 bp | CAGTCACATCCTCTTCACTTCACAATTACAGATAGCTaGATCCCCCAACCCATTTCAGAAGAGCTGCAAGGT | + |
|
Preference number: 6 (lower is better) Translates to: QSHPLHFTITDS*IPQPISEELQG Trigger: ACCTTGCAGCTCTTCTGAAATGGGTTGGGGGATCCAGCTATCTGTAATTGTGAAGTGAAGAGGATGTGACTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000416104.5 ENST00000416890.5 ENST00000444910.5 ENST00000448744.5 |
||
| CDS CCA 72 bp | CATCCAGTGTCTAAATCCACATCACCTAAAAGTACCTaGAAGATCATAGGCTTCCTCGTCAGGTCCTCCAAG | + |
|
Preference number: 6 (lower is better) Translates to: HPVSKSTSPKST*KIIGFLVRSSK Trigger: CTTGGAGGACCTGACGAGGAAGCCTATGATCTTCCAGGTACTTTTAGGTGATGTGGATTTAGACACTGGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000448744.5 |
||
| CDS CAA 90 bp | ATGAGAAAAAGACTGTCTGTTTCAGGATACCTGGGAAAAGTCCTATaGGCTCTAGTTGGGTCACTGCCCATTCCTGAGGCAATCACTTTG | + |
|
Preference number: 6 (lower is better) Translates to: MRKRLSVSGYLGKVL*ALVGSLPIPEAITL Trigger: CAAAGTGATTGCCTCAGGAATGGGCAGTGACCCAACTAGAGCCAATAGGACTTTTCCCAGGTATCCTGAAACAGACAGTCTTTTTCTCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000448744.5 |
||
| CDS TCA 72 bp | TACTGCTATGATTCTGAAAAAGTCACTTTGCCACTCTaGGTCTCATTTCCTCAGCTGCAAATGGGGCTGACC | + |
|
Preference number: 6 (lower is better) Translates to: YCYDSEKVTLPL*VSFPQLQMGLT Trigger: GGTCAGCCCCATTTGCAGCTGAGGAAATGAGACTCAGAGTGGCAAAGTGACTTTTTCAGAATCATAGCAGTA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000368974.7 ENST00000448744.5 |
||
| CDS TCA 72 bp | ATAGCTTTTATGGTTGTTCCTGACAAGAGGGCCATCTaGTACCAGTCACTCCATCGTAGTCAGAAGCAGAAG | + |
|
Preference number: 6 (lower is better) Translates to: IAFMVVPDKRAI*YQSLHRSQKQK Trigger: CTTCTGCTTCTGACTACGATGGAGTGACTGGTATCAGATGGCCCTCTTGTCAGGAACAACCATAAAAGCTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000448744.5 |
||
| CDS CAA 90 bp | TGCTTGTTGAAGCCAATCTCAAATCAGCTCATGACCATAAGATGGTaGTCAGCAACTCCCAGAACTATACTGTCTCAGGTCCACATCCAT | + |
|
Preference number: 6 (lower is better) Translates to: CLLKPISNQLMTIRW*SATPRTILSQVHIH Trigger: ATGGATGTGGACCTGAGACAGTATAGTTCTGGGAGTTGCTGACAACCATCTTATGGTCATGAGCTGATTTGAGATTGGCTTCAACAAGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000448744.5 |
||
| CDS CAA 72 bp | ATCATTGTAAACCTCTTGTTCCACCCCAAGTGTTGTTaGTGTGTAACACGTGTCAAGGGTTTCCACTCAGAG | + |
|
Preference number: 6 (lower is better) Translates to: IIVNLLFHPKCC*CVTRVKGFHSE Trigger: CTCTGAGTGGAAACCCTTGACACGTGTTACACACAAACAACACTTGGGGTGGAACAAGAGGTTTACAATGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000368974.7 ENST00000448744.5 |
||
| CDS CAA 72 bp | AAGCCAATCTCAAATCAGCTCATGACCATAAGATGGTaGTCAGCAACTCCCAGAACTATACTGTCTCAGGTC | + |
|
Preference number: 6 (lower is better) Translates to: KPISNQLMTIRW*SATPRTILSQV Trigger: GACCTGAGACAGTATAGTTCTGGGAGTTGCTGACAACCATCTTATGGTCATGAGCTGATTTGAGATTGGCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000448744.5 |
||
| CDS CAA 90 bp | ATGCTGAATTGTATTATGGGTCCCAGACAGATCATTGTAAACCTCTaGTTCCACCCCAAGTGTTGTTTGTGTGTAACACGTGTCAAGGGT | + |
|
Preference number: 6 (lower is better) Translates to: MLNCIMGPRQIIVNL*FHPKCCLCVTRVKG Trigger: ACCCTTGACACGTGTTACACACAAACAACACTTGGGGTGGAACAAGAGGTTTACAATGATCTGTCTGGGACCCATAATACAATTCAGCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000368974.7 ENST00000448744.5 |
||
| CDS TCA 72 bp | TGCCTTGACATTTCTCCATGCTATCAAAAAGCTGGGTaGAGTATAGCTTTTATGGTTGTTCCTGACAAGAGG | + |
|
Preference number: 6 (lower is better) Translates to: CLDISPCYQKAG*SIAFMVVPDKR Trigger: CCTCTTGTCAGGAACAACCATAAAAGCTATACTTCACCCAGCTTTTTGATAGCATGGAGAAATGTCAAGGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000448744.5 |
||