Pregenerated sensors for LINC00221 (Homo sapiens)
Ensembl gene IDs: ENSG00000270816Ensembl transcript IDs: ENST00000603633.3, ENST00000619530.1, ENST00000620337.5, ENST00000659544.1
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GAGCTGAATCCACTAGCCCGCTTCCATGGGCTGTCAGGAACACATTaGAAGGGTGACACACACGATGATCCATCTCTGCAGAGCCAACTC | + |
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Preference number: 5 (lower is better) Translates to: ELNPLARFHGLSGTH*KGDTHDDPSLQSQL Trigger: GAGTTGGCTCTGCAGAGATGGATCATCGTGTGTGTCACCCTTGCAATGTGTTCCTGACAGCCCATGGAAGCGGGCTAGTGGATTCAGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000603633.3 ENST00000620337.5 ENST00000659544.1 |
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| CDS CCA 90 bp | GTGGTGGTTGAAAGCCCACAGCCTCGCCAGTCCTGTGGATATTTCTaGATGTTCTCAGAGTCTCCATTGTCTCGGAAACCTGAAGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: VVVESPQPRQSCGYF*MFSESPLSRKPEGS Trigger: GCTGCCTTCAGGTTTCCGAGACAATGGAGACTCTGAGAACATCCAGAAATATCCACAGGACTGGCGAGGCTGTGGGCTTTCAACCACCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000603633.3 ENST00000620337.5 ENST00000659544.1 |
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| CDS TCA 90 bp | GGGTTCGATCACAAGATGAAGTCTCGTGATAGGCCGTCTGCAAGCTaGGGAGCAAGGAAGCCAGTCCAAGTCCCAAAACCTCGAAAGTCA | + |
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Preference number: 5 (lower is better) Translates to: GFDHKMKSRDRPSAS*GARKPVQVPKPRKS Trigger: TGACTTTCGAGGTTTTGGGACTTGGACTGGCTTCCTTGCTCCTCAGCTTGCAGACGGCCTATCACGAGACTTCATCTTGTGATCGAACCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000619530.1 |
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| CDS TCA 90 bp | GATTTGAAATTGATGCCCAGGCCTCAGGGTCTGCTGACAGAGCTGTaGCAGTGGGAGTGGAACTCACACAGAGCAAAACAGAGTGTGTTG | + |
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Preference number: 5 (lower is better) Translates to: DLKLMPRPQGLLTEL*QWEWNSHRAKQSVL Trigger: CAACACACTCTGTTTTGCTCTGTGTGAGTTCCACTCCCACTGTCACAGCTCTGTCAGCAGACCCTGAGGCCTGGGCATCAATTTCAAATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000620337.5 |
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| CDS TCA 90 bp | TATCTTGAAGCACAACAGGTTCTTCGAGTGGGTTCGATCACAAGATaGAGTCTCGTGATAGGCCGTCTGCAAGCTGAGGAGCAAGGAAGC | + |
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Preference number: 5 (lower is better) Translates to: YLEAQQVLRVGSITR*SLVIGRLQAEEQGS Trigger: GCTTCCTTGCTCCTCAGCTTGCAGACGGCCTATCACGAGACTTCATCTTGTGATCGAACCCACTCGAAGAACCTGTTGTGCTTCAAGATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000619530.1 |
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| CDS CCA 90 bp | GAGTCTGATGTTCGAGGGCAGGAAGCATCCAGCATGGGAGAAAGATaGAGGCTGGAAGACTCAGCAAGTCTAGTCTTTCCAATTTCTCCT | + |
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Preference number: 5 (lower is better) Translates to: ESDVRGQEASSMGER*RLEDSASLVFPISP Trigger: AGGAGAAATTGGAAAGACTAGACTTGCTGAGTCTTCCAGCCTCCATCTTTCTCCCATGCTGGATGCTTCCTGCCCTCGAACATCAGACTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000619530.1 |
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| CDS TCA 90 bp | CACTGGCTTAAGTCCAAGAGTGAAAAAGCTGAAGAACTTGGAGTCTaGTGTTCGAGGGCAGGAAGCATCCAGCATGGGAGAAAGATGGAG | + |
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Preference number: 5 (lower is better) Translates to: HWLKSKSEKAEELGV*CSRAGSIQHGRKME Trigger: CTCCATCTTTCTCCCATGCTGGATGCTTCCTGCCCTCGAACATCAGACTCCAAGTTCTTCAGCTTTTTCACTCTTGGACTTAAGCCAGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000619530.1 |
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| CDS TCA 90 bp | ATATCACAGACTAAAGGACACCCTTCCCACAGCATTGGCTCTCCATaGAGATTTGAAATTGATGCCCAGGCCTCAGGGTCTGCTGACAGA | + |
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Preference number: 5 (lower is better) Translates to: ISQTKGHPSHSIGSP*RFEIDAQASGSADR Trigger: TCTGTCAGCAGACCCTGAGGCCTGGGCATCAATTTCAAATCTTCATGGAGAGCCAATGCTGTGGGAAGGGTGTCCTTTAGTCTGTGATAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000620337.5 |
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| CDS TCA 90 bp | GCAGCTCTGAGATTCACTAAAATGTCCAGCTCTGTCCCTCACTCGTaGATATCACAGACTAAAGGACACCCTTCCCACAGCATTGGCTCT | + |
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Preference number: 5 (lower is better) Translates to: AALRFTKMSSSVPHS*ISQTKGHPSHSIGS Trigger: AGAGCCAATGCTGTGGGAAGGGTGTCCTTTAGTCTGTGATATTCACGAGTGAGGGACAGAGCTGGACATTTTAGTGAATCTCAGAGCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000620337.5 |
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| CDS GCA 90 bp | TGTCAGGAACACATTGCAAGGGTGACACACACGATGATCCATCTCTaGAGAGCCAACTCTCCTTCTCCAGAGATTCATCCAAGAAACAAT | + |
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Preference number: 5 (lower is better) Translates to: CQEHIARVTHTMIHL*RANSPSPEIHPRNN Trigger: ATTGTTTCTTGGATGAATCTCTGGAGAAGGAGAGTTGGCTCTGCAGAGATGGATCATCGTGTGTGTCACCCTTGCAATGTGTTCCTGACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000603633.3 ENST00000620337.5 ENST00000659544.1 |
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| CDS CCA 90 bp | TCACTGATGTCAATTTTAGAAGAATCATATGCAAACAGCCTCTCGTaGTGGTTGAAAGCCCACAGCCTCGCCAGTCCTGTGGATATTTCT | + |
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Preference number: 5 (lower is better) Translates to: SLMSILEESYANSLS*WLKAHSLASPVDIS Trigger: AGAAATATCCACAGGACTGGCGAGGCTGTGGGCTTTCAACCACCACGAGAGGCTGTTTGCATATGATTCTTCTAAAATTGACATCAGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000603633.3 ENST00000620337.5 ENST00000659544.1 |
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| CDS CCA 90 bp | TGGGTCTGCCTCACCCAGTCTACTGACTCAAATGTTAATCTTCTTTaGCAATACCCTCACAGACACACTCAGGAACAATTCTTTGCATCT | + |
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Preference number: 5 (lower is better) Translates to: WVCLTQSTDSNVNLL*QYPHRHTQEQFFAS Trigger: AGATGCAAAGAATTGTTCCTGAGTGTGTCTGTGAGGGTATTGCCAAAGAAGATTAACATTTGAGTCAGTAGACTGGGTGAGGCAGACCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000619530.1 |
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| CDS TCA 90 bp | GTACAACATTTTCATAATGGAGGGAATCTCTTGGTCCCAGGAAGATaGCAATTTAATATGTCTCAGGCCTGTGGAGCTCTCTTTAGGAGC | + |
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Preference number: 5 (lower is better) Translates to: VQHFHNGGNLLVPGR*QFNMSQACGALFRS Trigger: GCTCCTAAAGAGAGCTCCACAGGCCTGAGACATATTAAATTGTCATCTTCCTGGGACCAAGAGATTCCCTCCATTATGAAAATGTTGTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000620337.5 |
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| CDS TCA 90 bp | ATAAAGCAGATGATTTTCCGATTGTTCCACCCTACCGGGTTATATTaGACAGTGGACACAGGATTCAACAGGTACCGATTATTAATCCAG | + |
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Preference number: 5 (lower is better) Translates to: IKQMIFRLFHPTGLY*TVDTGFNRYRLLIQ Trigger: CTGGATTAATAATCGGTACCTGTTGAATCCTGTGTCCACTGTTCAATATAACCCGGTAGGGTGGAACAATCGGAAAATCATCTGCTTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000620337.5 |
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| CDS CCA 90 bp | TGCATAATAAGGCTGTACAACATTTTCATAATGGAGGGAATCTCTTaGTCCCAGGAAGATGACAATTTAATATGTCTCAGGCCTGTGGAG | + |
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Preference number: 5 (lower is better) Translates to: CIIRLYNIFIMEGIS*SQEDDNLICLRPVE Trigger: CTCCACAGGCCTGAGACATATTAAATTGTCATCTTCCTGGGACCAAGAGATTCCCTCCATTATGAAAATGTTGTACAGCCTTATTATGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000620337.5 |
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| CDS TCA 90 bp | TATTATTCACAAACTAACAAATATATAATGTTTATCGGACTAACATaGACAGGAAATCCATCACCTCCAGGCTGGCCTTACAAGAAATGC | + |
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Preference number: 5 (lower is better) Translates to: YYSQTNKYIMFIGLT*TGNPSPPGWPYKKC Trigger: GCATTTCTTGTAAGGCCAGCCTGGAGGTGATGGATTTCCTGTTCATGTTAGTCCGATAAACATTATATATTTGTTAGTTTGTGAATAATA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659544.1 |
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| CDS CCA 90 bp | TTAATAAAACAAGAGCAGAAAACGTCCCATATCATGGGAGATAGATaGTTATTCAGATCCAGGAAACTCAAATATTCCAAACAGACTGAA | + |
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Preference number: 5 (lower is better) Translates to: LIKQEQKTSHIMGDR*LFRSRKLKYSKQTE Trigger: TTCAGTCTGTTTGGAATATTTGAGTTTCCTGGATCTGAATAACCATCTATCTCCCATGATATGGGACGTTTTCTGCTCTTGTTTTATTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659544.1 |
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| CDS TCA 72 bp | AGGGAAGAGATTCGTCACCTCCTGTGCGAAGGGGGCTaGAGCGAGGAAGACAAGTGGCCTGGCTTCCACAGA | + |
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Preference number: 6 (lower is better) Translates to: REEIRHLLCEGG*SEEDKWPGFHR Trigger: TCTGTGGAAGCCAGGCCACTTGTCTTCCTCGCTTCAGCCCCCTTCGCACAGGAGGTGACGAATCTCTTCCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000620337.5 |
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| CDS TCA 72 bp | CATGCTGGCAGCTCATTAGATGGTGCCCAGGGAGGTTaGGGTTGGGTCTGCCTCACCCAGTCTACTGACTCA | + |
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Preference number: 6 (lower is better) Translates to: HAGSSLDGAQGG*GWVCLTQSTDS Trigger: TGAGTCAGTAGACTGGGTGAGGCAGACCCAACCTCAACCTCCCTGGGCACCATCTAATGAGCTGCCAGCATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000619530.1 |
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| CDS TCA 72 bp | TTGATGCCCAGGCCTCAGGGTCTGCTGACAGAGCTGTaGCAGTGGGAGTGGAACTCACACAGAGCAAAACAG | + |
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Preference number: 6 (lower is better) Translates to: LMPRPQGLLTEL*QWEWNSHRAKQ Trigger: CTGTTTTGCTCTGTGTGAGTTCCACTCCCACTGTCACAGCTCTGTCAGCAGACCCTGAGGCCTGGGCATCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000620337.5 |
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| CDS GCA 72 bp | CCACTAGCCCGCTTCCATGGGCTGTCAGGAACACATTaGAAGGGTGACACACACGATGATCCATCTCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: PLARFHGLSGTH*KGDTHDDPSLQ Trigger: CTGCAGAGATGGATCATCGTGTGTGTCACCCTTGCAATGTGTTCCTGACAGCCCATGGAAGCGGGCTAGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000603633.3 ENST00000620337.5 ENST00000659544.1 |
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| CDS TCA 72 bp | CACAAGATGAAGTCTCGTGATAGGCCGTCTGCAAGCTaGGGAGCAAGGAAGCCAGTCCAAGTCCCAAAACCT | + |
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Preference number: 6 (lower is better) Translates to: HKMKSRDRPSAS*GARKPVQVPKP Trigger: AGGTTTTGGGACTTGGACTGGCTTCCTTGCTCCTCAGCTTGCAGACGGCCTATCACGAGACTTCATCTTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000619530.1 |
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| CDS TCA 72 bp | GCACAACAGGTTCTTCGAGTGGGTTCGATCACAAGATaGAGTCTCGTGATAGGCCGTCTGCAAGCTGAGGAG | + |
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Preference number: 6 (lower is better) Translates to: AQQVLRVGSITR*SLVIGRLQAEE Trigger: CTCCTCAGCTTGCAGACGGCCTATCACGAGACTTCATCTTGTGATCGAACCCACTCGAAGAACCTGTTGTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000619530.1 |
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| CDS CCA 72 bp | GTTCGAGGGCAGGAAGCATCCAGCATGGGAGAAAGATaGAGGCTGGAAGACTCAGCAAGTCTAGTCTTTCCA | + |
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Preference number: 6 (lower is better) Translates to: VRGQEASSMGER*RLEDSASLVFP Trigger: TGGAAAGACTAGACTTGCTGAGTCTTCCAGCCTCCATCTTTCTCCCATGCTGGATGCTTCCTGCCCTCGAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000619530.1 |
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| CDS CAA 72 bp | GACACCCTTCCCACAGCATTGGCTCTCCATGAAGATTaGAAATTGATGCCCAGGCCTCAGGGTCTGCTGACA | + |
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Preference number: 6 (lower is better) Translates to: DTLPTALALHED*KLMPRPQGLLT Trigger: TGTCAGCAGACCCTGAGGCCTGGGCATCAATTTCAAATCTTCATGGAGAGCCAATGCTGTGGGAAGGGTGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000620337.5 |
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| CDS CCA 72 bp | GAAAGCCCACAGCCTCGCCAGTCCTGTGGATATTTCTaGATGTTCTCAGAGTCTCCATTGTCTCGGAAACCT | + |
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Preference number: 6 (lower is better) Translates to: ESPQPRQSCGYF*MFSESPLSRKP Trigger: AGGTTTCCGAGACAATGGAGACTCTGAGAACATCCAGAAATATCCACAGGACTGGCGAGGCTGTGGGCTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000603633.3 ENST00000620337.5 ENST00000659544.1 |
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| CDS GCA 72 bp | CACATTGCAAGGGTGACACACACGATGATCCATCTCTaGAGAGCCAACTCTCCTTCTCCAGAGATTCATCCA | + |
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Preference number: 6 (lower is better) Translates to: HIARVTHTMIHL*RANSPSPEIHP Trigger: TGGATGAATCTCTGGAGAAGGAGAGTTGGCTCTGCAGAGATGGATCATCGTGTGTGTCACCCTTGCAATGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000603633.3 ENST00000620337.5 ENST00000659544.1 |
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| CDS CAA 90 bp | TGGCAAACCACTGGCTTAAGTCCAAGAGTGAAAAAGCTGAAGAACTaGGAGTCTGATGTTCGAGGGCAGGAAGCATCCAGCATGGGAGAA | + |
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Preference number: 6 (lower is better) Translates to: WQTTGLSPRVKKLKN*ESDVRGQEASSMGE Trigger: TTCTCCCATGCTGGATGCTTCCTGCCCTCGAACATCAGACTCCAAGTTCTTCAGCTTTTTCACTCTTGGACTTAAGCCAGTGGTTTGCCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000619530.1 |
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| CDS CAA 90 bp | CTCACTCGTGAATATCACAGACTAAAGGACACCCTTCCCACAGCATaGGCTCTCCATGAAGATTTGAAATTGATGCCCAGGCCTCAGGGT | + |
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Preference number: 6 (lower is better) Translates to: LTREYHRLKDTLPTA*ALHEDLKLMPRPQG Trigger: ACCCTGAGGCCTGGGCATCAATTTCAAATCTTCATGGAGAGCCAATGCTGTGGGAAGGGTGTCCTTTAGTCTGTGATATTCACGAGTGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000620337.5 |
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| CDS CCA 72 bp | ATTTTAGAAGAATCATATGCAAACAGCCTCTCGTGGTaGTTGAAAGCCCACAGCCTCGCCAGTCCTGTGGAT | + |
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Preference number: 6 (lower is better) Translates to: ILEESYANSLSW*LKAHSLASPVD Trigger: ATCCACAGGACTGGCGAGGCTGTGGGCTTTCAACCACCACGAGAGGCTGTTTGCATATGATTCTTCTAAAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000603633.3 ENST00000620337.5 ENST00000659544.1 |
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| CDS CCA 72 bp | TCAATTTTAGAAGAATCATATGCAAACAGCCTCTCGTaGTGGTTGAAAGCCCACAGCCTCGCCAGTCCTGTG | + |
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Preference number: 6 (lower is better) Translates to: SILEESYANSLS*WLKAHSLASPV Trigger: CACAGGACTGGCGAGGCTGTGGGCTTTCAACCACCACGAGAGGCTGTTTGCATATGATTCTTCTAAAATTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000603633.3 ENST00000620337.5 ENST00000659544.1 |
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| CDS CAA 72 bp | TTAGAAGAATCATATGCAAACAGCCTCTCGTGGTGGTaGAAAGCCCACAGCCTCGCCAGTCCTGTGGATATT | + |
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Preference number: 6 (lower is better) Translates to: LEESYANSLSWW*KAHSLASPVDI Trigger: AATATCCACAGGACTGGCGAGGCTGTGGGCTTTCAACCACCACGAGAGGCTGTTTGCATATGATTCTTCTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000603633.3 ENST00000620337.5 ENST00000659544.1 |
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| CDS CAA 72 bp | ACTGGCTTAAGTCCAAGAGTGAAAAAGCTGAAGAACTaGGAGTCTGATGTTCGAGGGCAGGAAGCATCCAGC | + |
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Preference number: 6 (lower is better) Translates to: TGLSPRVKKLKN*ESDVRGQEASS Trigger: GCTGGATGCTTCCTGCCCTCGAACATCAGACTCCAAGTTCTTCAGCTTTTTCACTCTTGGACTTAAGCCAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000619530.1 |
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| CDS CAA 72 bp | ATATGTCTCAGGCCTGTGGAGCTCTCTTTAGGAGCTTaGTGTGTGGCTTCTTTGTATACTCTGGCTCCAGGA | + |
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Preference number: 6 (lower is better) Translates to: ICLRPVELSLGA*CVASLYTLAPG Trigger: TCCTGGAGCCAGAGTATACAAAGAAGCCACACACAAAGCTCCTAAAGAGAGCTCCACAGGCCTGAGACATAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000620337.5 |
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| CDS TCA 72 bp | AGATTCACTAAAATGTCCAGCTCTGTCCCTCACTCGTaGATATCACAGACTAAAGGACACCCTTCCCACAGC | + |
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Preference number: 6 (lower is better) Translates to: RFTKMSSSVPHS*ISQTKGHPSHS Trigger: GCTGTGGGAAGGGTGTCCTTTAGTCTGTGATATTCACGAGTGAGGGACAGAGCTGGACATTTTAGTGAATCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000620337.5 |
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| CDS TCA 72 bp | TTTCATAATGGAGGGAATCTCTTGGTCCCAGGAAGATaGCAATTTAATATGTCTCAGGCCTGTGGAGCTCTC | + |
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Preference number: 6 (lower is better) Translates to: FHNGGNLLVPGR*QFNMSQACGAL Trigger: GAGAGCTCCACAGGCCTGAGACATATTAAATTGTCATCTTCCTGGGACCAAGAGATTCCCTCCATTATGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000620337.5 |
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| CDS GCA 72 bp | GGAAATCCATCACCTCCAGGCTGGCCTTACAAGAAATaGTCAAGATTCTTACATAAGTGTCTTAGTCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: GNPSPPGWPYKK*SRFLHKCLSPA Trigger: TGCTGGACTAAGACACTTATGTAAGAATCTTGAGCATTTCTTGTAAGGCCAGCCTGGAGGTGATGGATTTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659544.1 |
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| CDS CAA 72 bp | GATGATTTTCCGATTGTTCCACCCTACCGGGTTATATaGAACAGTGGACACAGGATTCAACAGGTACCGATT | + |
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Preference number: 6 (lower is better) Translates to: DDFPIVPPYRVI*NSGHRIQQVPI Trigger: AATCGGTACCTGTTGAATCCTGTGTCCACTGTTCAATATAACCCGGTAGGGTGGAACAATCGGAAAATCATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000620337.5 |
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| CDS TCA 72 bp | ATGATTTTCCGATTGTTCCACCCTACCGGGTTATATTaGACAGTGGACACAGGATTCAACAGGTACCGATTA | + |
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Preference number: 6 (lower is better) Translates to: MIFRLFHPTGLY*TVDTGFNRYRL Trigger: TAATCGGTACCTGTTGAATCCTGTGTCCACTGTTCAATATAACCCGGTAGGGTGGAACAATCGGAAAATCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000620337.5 |
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| CDS CCA 72 bp | CTCACCCAGTCTACTGACTCAAATGTTAATCTTCTTTaGCAATACCCTCACAGACACACTCAGGAACAATTC | + |
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Preference number: 6 (lower is better) Translates to: LTQSTDSNVNLL*QYPHRHTQEQF Trigger: GAATTGTTCCTGAGTGTGTCTGTGAGGGTATTGCCAAAGAAGATTAACATTTGAGTCAGTAGACTGGGTGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000619530.1 |
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| CDS TCA 72 bp | TTGTTTCCTTTTTCTGTGTTAACTTGTTTACGACTATaGCCTCCAGCTGCATCCATGTTGCTGCAAAGGACA | + |
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Preference number: 6 (lower is better) Translates to: LFPFSVLTCLRL*PPAASMLLQRT Trigger: TGTCCTTTGCAGCAACATGGATGCAGCTGGAGGTCATAGTCGTAAACAAGTTAACACAGAAAAAGGAAACAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000603633.3 |
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| CDS TCA 72 bp | TCTTATTTAAACACAGTTTGCACACTCAAGAGTGTATaGGTGGTTGAGGTATGGCTGCTGAAATTGGCCAAC | + |
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Preference number: 6 (lower is better) Translates to: SYLNTVCTLKSV*VVEVWLLKLAN Trigger: GTTGGCCAATTTCAGCAGCCATACCTCAACCACTCATACACTCTTGAGTGTGCAAACTGTGTTTAAATAAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000619530.1 |
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| CDS GCA 72 bp | CTTGTTTACGACTATGACCTCCAGCTGCATCCATGTTaGTGCAAAGGACATGATTTTGTTTCTTTTGTGACA | + |
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Preference number: 6 (lower is better) Translates to: LVYDYDLQLHPC*CKGHDFVSFVT Trigger: TGTCACAAAAGAAACAAAATCATGTCCTTTGCAGCAACATGGATGCAGCTGGAGGTCATAGTCGTAAACAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000603633.3 |
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| CDS GCA 72 bp | GGGAGTGGAACTCACACAGAGCAAAACAGAGTGTGTTaGATAATAAGGCTGTACAACATTTTCATAATGGAG | + |
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Preference number: 6 (lower is better) Translates to: GSGTHTEQNRVC*IIRLYNIFIME Trigger: CTCCATTATGAAAATGTTGTACAGCCTTATTATGCAACACACTCTGTTTTGCTCTGTGTGAGTTCCACTCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000620337.5 |
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| CDS CAA 90 bp | CATAAAGCAGATGATTTTCCGATTGTTCCACCCTACCGGGTTATATaGAACAGTGGACACAGGATTCAACAGGTACCGATTATTAATCCA | + |
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Preference number: 6 (lower is better) Translates to: HKADDFPIVPPYRVI*NSGHRIQQVPIINP Trigger: TGGATTAATAATCGGTACCTGTTGAATCCTGTGTCCACTGTTCAATATAACCCGGTAGGGTGGAACAATCGGAAAATCATCTGCTTTATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000620337.5 |
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| CDS TCA 72 bp | GACACAGGATTCAACAGGTACCGATTATTAATCCAGTaGGGAAATTATAGAATAGTCCCAAGTCTAGGCAGA | + |
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Preference number: 6 (lower is better) Translates to: DTGFNRYRLLIQ*GNYRIVPSLGR Trigger: TCTGCCTAGACTTGGGACTATTCTATAATTTCCTCACTGGATTAATAATCGGTACCTGTTGAATCCTGTGTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000620337.5 |
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| CDS GCA 72 bp | TTCTGTGTTAACTTGTTTACGACTATGACCTCCAGCTaGATCCATGTTGCTGCAAAGGACATGATTTTGTTT | + |
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Preference number: 6 (lower is better) Translates to: FCVNLFTTMTSS*IHVAAKDMILF Trigger: AAACAAAATCATGTCCTTTGCAGCAACATGGATGCAGCTGGAGGTCATAGTCGTAAACAAGTTAACACAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000603633.3 |
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| CDS CCA 72 bp | AGGCTGTACAACATTTTCATAATGGAGGGAATCTCTTaGTCCCAGGAAGATGACAATTTAATATGTCTCAGG | + |
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Preference number: 6 (lower is better) Translates to: RLYNIFIMEGIS*SQEDDNLICLR Trigger: CCTGAGACATATTAAATTGTCATCTTCCTGGGACCAAGAGATTCCCTCCATTATGAAAATGTTGTACAGCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000620337.5 |
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| CDS TCA 72 bp | GAAACAATTTTGACTATACCTGAGCTCTGTGACATCTaGGGACATGGTTTGTATTACTTCTTCAGACATGAC | + |
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Preference number: 6 (lower is better) Translates to: ETILTIPELCDI*GHGLYYFFRHD Trigger: GTCATGTCTGAAGAAGTAATACAAACCATGTCCTCAGATGTCACAGAGCTCAGGTATAGTCAAAATTGTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000620337.5 |
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| CDS CCA 72 bp | CAAGAGCAGAAAACGTCCCATATCATGGGAGATAGATaGTTATTCAGATCCAGGAAACTCAAATATTCCAAA | + |
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Preference number: 6 (lower is better) Translates to: QEQKTSHIMGDR*LFRSRKLKYSK Trigger: TTTGGAATATTTGAGTTTCCTGGATCTGAATAACCATCTATCTCCCATGATATGGGACGTTTTCTGCTCTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659544.1 |
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| CDS TCA 72 bp | GAAACAATTTTGACTATACCTGAGCTCTGTGACATCTaGGGACATGGTTTGTATTACTTAAATAAGAGCTTT | + |
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Preference number: 6 (lower is better) Translates to: ETILTIPELCDI*GHGLYYLNKSF Trigger: AAAGCTCTTATTTAAGTAATACAAACCATGTCCTCAGATGTCACAGAGCTCAGGTATAGTCAAAATTGTTTC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000603633.3 ENST00000659544.1 |
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| CDS CAA 72 bp | ATTTATTTTACTTTGGCTATATACCTAATGATGGGATaGCTGGGTCAAACAGTAGCTCTGTTTCAAGTTCTT | + |
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Preference number: 6 (lower is better) Translates to: IYFTLAIYLMMG*LGQTVALFQVL Trigger: AAGAACTTGAAACAGAGCTACTGTTTGACCCAGCAATCCCATCATTAGGTATATAGCCAAAGTAAAATAAAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000603633.3 |
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