Pregenerated sensors for LINC00216 (Homo sapiens)
Ensembl gene IDs: ENSG00000279636Ensembl transcript IDs: ENST00000623548.1, ENST00000627309.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AAAGTTTTAGATGAAGCCTGCAGCAGCAGACCAGTCACATCGATTTaGAAGGGAAAAGTTAATCTTGTTTATGCCAACATCTCAATTGGT | + |
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Preference number: 5 (lower is better) Translates to: KVLDEACSSRPVTSI*KGKVNLVYANISIG Trigger: ACCAATTGAGATGTTGGCATAAACAAGATTAACTTTTCCCTTGCAAATCGATGTGACTGGTCTGCTGCTGCAGGCTTCATCTAAAACTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000623548.1 ENST00000627309.1 |
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| CDS GCA 90 bp | AAATGCATAACTAGTTTAAGACGAAGCAAAGTTTTAGATGAAGCCTaGAGCAGCAGACCAGTCACATCGATTTGCAAGGGAAAAGTTAAT | + |
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Preference number: 5 (lower is better) Translates to: KCITSLRRSKVLDEA*SSRPVTSICKGKVN Trigger: ATTAACTTTTCCCTTGCAAATCGATGTGACTGGTCTGCTGCTGCAGGCTTCATCTAAAACTTTGCTTCGTCTTAAACTAGTTATGCATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000623548.1 ENST00000627309.1 |
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| CDS TCA 90 bp | AAACTCATACTAACTTGTTATAACATGTCTGAACAGGATCTAGTTTaGGGCACTAAGAAGGATAGGACATCAGTTTGCAAAGAGTCCCTA | + |
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Preference number: 5 (lower is better) Translates to: KLILTCYNMSEQDLV*GTKKDRTSVCKESL Trigger: TAGGGACTCTTTGCAAACTGATGTCCTATCCTTCTTAGTGCCTCAAACTAGATCCTGTTCAGACATGTTATAACAAGTTAGTATGAGTTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000623548.1 ENST00000627309.1 |
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| CDS GCA 72 bp | GATGAAGCCTGCAGCAGCAGACCAGTCACATCGATTTaGAAGGGAAAAGTTAATCTTGTTTATGCCAACATC | + |
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Preference number: 6 (lower is better) Translates to: DEACSSRPVTSI*KGKVNLVYANI Trigger: GATGTTGGCATAAACAAGATTAACTTTTCCCTTGCAAATCGATGTGACTGGTCTGCTGCTGCAGGCTTCATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000623548.1 ENST00000627309.1 |
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| CDS TCA 72 bp | GTAGGGAGACAAGATACTGTTGAAGTGGTATCAGCATaGGATGAAACTAGAGTAGGAACTGGAGAGAGAAAG | + |
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Preference number: 6 (lower is better) Translates to: VGRQDTVEVVSA*DETRVGTGERK Trigger: CTTTCTCTCTCCAGTTCCTACTCTAGTTTCATCTCATGCTGATACCACTTCAACAGTATCTTGTCTCCCTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000623548.1 ENST00000627309.1 |
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| CDS CAA 72 bp | CAAAATCTTTGCGGGTTCCCTAATTGGGACAAGGCATaGTCCCAAACCCTACATTGTTTCTACATTGTGACT | + |
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Preference number: 6 (lower is better) Translates to: QNLCGFPNWDKA*SQTLHCFYIVT Trigger: AGTCACAATGTAGAAACAATGTAGGGTTTGGGACAATGCCTTGTCCCAATTAGGGAACCCGCAAAGATTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000623548.1 ENST00000627309.1 |
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| CDS CCA 72 bp | TCTTCATTTTGTCAAAATCTTTGCGGGTTCCCTAATTaGGACAAGGCATTGTCCCAAACCCTACATTGTTTC | + |
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Preference number: 6 (lower is better) Translates to: SSFCQNLCGFPN*DKALSQTLHCF Trigger: GAAACAATGTAGGGTTTGGGACAATGCCTTGTCCCAATTAGGGAACCCGCAAAGATTTTGACAAAATGAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000623548.1 ENST00000627309.1 |
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| CDS TCA 72 bp | CTAACTTGTTATAACATGTCTGAACAGGATCTAGTTTaGGGCACTAAGAAGGATAGGACATCAGTTTGCAAA | + |
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Preference number: 6 (lower is better) Translates to: LTCYNMSEQDLV*GTKKDRTSVCK Trigger: TTTGCAAACTGATGTCCTATCCTTCTTAGTGCCTCAAACTAGATCCTGTTCAGACATGTTATAACAAGTTAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000623548.1 ENST00000627309.1 |
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| CDS CCA 72 bp | TACCATTCACTGATTTGGCAAGTCAAGAAAAGCCACTaGTTGGTAAAGATGATGAAATCTGTTTTAAACATG | + |
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Preference number: 6 (lower is better) Translates to: YHSLIWQVKKSH*LVKMMKSVLNM Trigger: CATGTTTAAAACAGATTTCATCATCTTTACCAACCAGTGGCTTTTCTTGACTTGCCAAATCAGTGAATGGTA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000623548.1 ENST00000627309.1 |
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| CDS GCA 72 bp | GACAATGCCCCAAAGAAATCAGTAGCAGTTTACAAATaGATAACTAGTTTAAGACGAAGCAAAGTTTTAGAT | + |
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Preference number: 6 (lower is better) Translates to: DNAPKKSVAVYK*ITSLRRSKVLD Trigger: ATCTAAAACTTTGCTTCGTCTTAAACTAGTTATGCATTTGTAAACTGCTACTGATTTCTTTGGGGCATTGTC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000623548.1 ENST00000627309.1 |
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