Pregenerated sensors for LINC00173 (Homo sapiens)
Ensembl gene IDs: ENSG00000196668Ensembl transcript IDs: ENST00000470091.1, ENST00000477702.1, ENST00000480237.1, ENST00000489452.1, ENST00000659479.1
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GTACCGAGAGCTGGCTCTCGCCTGGGGCCTTGGAGTCTGGGTAGCTaGATGCTGGGAGAGGCTGCGGAGGTAAGGGCCCAGGGGCTGAGG | + |
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Preference number: 5 (lower is better) Translates to: VPRAGSRLGPWSLGS*MLGEAAEVRAQGLR Trigger: CCTCAGCCCCTGGGCCCTTACCTCCGCAGCCTCTCCCAGCATCCAGCTACCCAGACTCCAAGGCCCCAGGCGAGAGCCAGCTCTCGGTAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000480237.1 |
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| CDS CCA 90 bp | TTCTGGGACCTGTGGAGCTCCAGGTACCGAGAGCTGGCTCTCGCCTaGGGCCTTGGAGTCTGGGTAGCTGGATGCTGGGAGAGGCTGCGG | + |
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Preference number: 5 (lower is better) Translates to: FWDLWSSRYRELALA*GLGVWVAGCWERLR Trigger: CCGCAGCCTCTCCCAGCATCCAGCTACCCAGACTCCAAGGCCCCAGGCGAGAGCCAGCTCTCGGTACCTGGAGCTCCACAGGTCCCAGAA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000480237.1 |
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| CDS GCA 90 bp | AAGGCTGGGTGGATGTGGCACAGCCTGACCCGAGCACTCACGATGTaGCAAGGAAGACTAGGTGCTGGGGAGGCAGAGGTGATCAAGATC | + |
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Preference number: 5 (lower is better) Translates to: KAGWMWHSLTRALTM*QGRLGAGEAEVIKI Trigger: GATCTTGATCACCTCTGCCTCCCCAGCACCTAGTCTTCCTTGGCACATCGTGAGTGCTCGGGTCAGGCTGTGCCACATCCACCCAGCCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000470091.1 ENST00000477702.1 ENST00000659479.1 |
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| CDS CCA 90 bp | CAGAACCAGAATTTGAACTCTGATCCACCCCGATTCTGGGACCTGTaGAGCTCCAGGTACCGAGAGCTGGCTCTCGCCTGGGGCCTTGGA | + |
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Preference number: 5 (lower is better) Translates to: QNQNLNSDPPRFWDL*SSRYRELALAWGLG Trigger: TCCAAGGCCCCAGGCGAGAGCCAGCTCTCGGTACCTGGAGCTCCACAGGTCCCAGAATCGGGGTGGATCAGAGTTCAAATTCTGGTTCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000480237.1 |
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| CDS TCA 90 bp | GGAATGCGGCCCTTGCACGCCCACTTTTTAACACAGTGCCATCCCTaGCAGACACCCTTGTCCTTTTCCTGTGCTGCCCTTCGTAACACC | + |
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Preference number: 5 (lower is better) Translates to: GMRPLHAHFLTQCHP*QTPLSFSCAALRNT Trigger: GGTGTTACGAAGGGCAGCACAGGAAAAGGACAAGGGTGTCTGTCAGGGATGGCACTGTGTTAAAAAGTGGGCGTGCAAGGGCCGCATTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000480237.1 |
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| CDS CCA 90 bp | TCACGTGATCTGAGTACATGTAGGATAAATGACCCCAGGCAAGGCTaGGTGGATGTGGCACAGCCTGACCCGAGCACTCACGATGTGCCA | + |
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Preference number: 5 (lower is better) Translates to: SRDLSTCRINDPRQG*VDVAQPDPSTHDVP Trigger: TGGCACATCGTGAGTGCTCGGGTCAGGCTGTGCCACATCCACCCAGCCTTGCCTGGGGTCATTTATCCTACATGTACTCAGATCACGTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000470091.1 ENST00000477702.1 ENST00000659479.1 |
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| CDS CCA 90 bp | CAGCCTGACCCGAGCACTCACGATGTGCCAAGGAAGACTAGGTGCTaGGGAGGCAGAGGTGATCAAGATCAATCTGGTATCTTTCCTTTT | + |
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Preference number: 5 (lower is better) Translates to: QPDPSTHDVPRKTRC*GGRGDQDQSGIFPF Trigger: AAAAGGAAAGATACCAGATTGATCTTGATCACCTCTGCCTCCCCAGCACCTAGTCTTCCTTGGCACATCGTGAGTGCTCGGGTCAGGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000470091.1 ENST00000477702.1 ENST00000659479.1 |
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| CDS TCA 90 bp | GGACCTCTTTCCGAAGTCCCGGGAACTAACATTCATCAACACCTCTaGCATCCCAGAGGATCGCAACATTCCTGCCAAGGGTTATTACTC | + |
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Preference number: 5 (lower is better) Translates to: GPLSEVPGTNIHQHL*HPRGSQHSCQGLLL Trigger: GAGTAATAACCCTTGGCAGGAATGTTGCGATCCTCTGGGATGTCAGAGGTGTTGATGAATGTTAGTTCCCGGGACTTCGGAAAGAGGTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000480237.1 |
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| CDS TCA 90 bp | AAAGACATTTGGCAAATGAGATTCCATTTTCACATTGGTTTGTGCTaGGCATATAAATTTCCTGCGGGCCGGCCAGCATTGGGGATGTGT | + |
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Preference number: 5 (lower is better) Translates to: KDIWQMRFHFHIGLC*AYKFPAGRPALGMC Trigger: ACACATCCCCAATGCTGGCCGGCCCGCAGGAAATTTATATGCTCAGCACAAACCAATGTGAAAATGGAATCTCATTTGCCAAATGTCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000480237.1 |
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| CDS CCA 90 bp | TTGGTTTGTGCTGAGCATATAAATTTCCTGCGGGCCGGCCAGCATTaGGGATGTGTAATTGATTGCCTGCATTATAATAAACAAGCTGTG | + |
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Preference number: 5 (lower is better) Translates to: LVCAEHINFLRAGQH*GCVIDCLHYNKQAV Trigger: CACAGCTTGTTTATTATAATGCAGGCAATCAATTACACATCCCCAATGCTGGCCGGCCCGCAGGAAATTTATATGCTCAGCACAAACCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000480237.1 |
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| CDS CCA 90 bp | GTGATCAAGATCAATCTGGTATCTTTCCTTTTGGAGCTTCCATACTaGTGGAGCAGAGGGCCATTAAACAAATACACGTGTCAAATAATA | + |
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Preference number: 5 (lower is better) Translates to: VIKINLVSFLLELPY*WSRGPLNKYTCQII Trigger: TATTATTTGACACGTGTATTTGTTTAATGGCCCTCTGCTCCACCAGTATGGAAGCTCCAAAAGGAAAGATACCAGATTGATCTTGATCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000477702.1 ENST00000659479.1 |
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| CDS CCA 90 bp | ATCAAGATCAATCTGGTATCTTTCCTTTTGGAGCTTCCATACTGGTaGAGCAGAGGGCCATTAAACAAATACACGTGTCAAATAATAAAG | + |
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Preference number: 5 (lower is better) Translates to: IKINLVSFLLELPYW*SRGPLNKYTCQIIK Trigger: CTTTATTATTTGACACGTGTATTTGTTTAATGGCCCTCTGCTCCACCAGTATGGAAGCTCCAAAAGGAAAGATACCAGATTGATCTTGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000477702.1 ENST00000659479.1 |
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| CDS CCA 72 bp | GCTGGCTCTCGCCTGGGGCCTTGGAGTCTGGGTAGCTaGATGCTGGGAGAGGCTGCGGAGGTAAGGGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: AGSRLGPWSLGS*MLGEAAEVRAQ Trigger: CTGGGCCCTTACCTCCGCAGCCTCTCCCAGCATCCAGCTACCCAGACTCCAAGGCCCCAGGCGAGAGCCAGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000480237.1 |
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| CDS CAA 90 bp | TGGATGCTGGGAGAGGCTGCGGAGGTAAGGGCCCAGGGGCTGAGGTaGCAGCGGCTGCCCGGGAATGCGGCCCTTGCACGCCCACTTTTT | + |
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Preference number: 6 (lower is better) Translates to: WMLGEAAEVRAQGLR*QRLPGNAALARPLF Trigger: AAAAAGTGGGCGTGCAAGGGCCGCATTCCCGGGCAGCCGCTGCAACCTCAGCCCCTGGGCCCTTACCTCCGCAGCCTCTCCCAGCATCCA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000480237.1 |
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| CDS GCA 72 bp | TGGATGTGGCACAGCCTGACCCGAGCACTCACGATGTaGCAAGGAAGACTAGGTGCTGGGGAGGCAGAGGTG | + |
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Preference number: 6 (lower is better) Translates to: WMWHSLTRALTM*QGRLGAGEAEV Trigger: CACCTCTGCCTCCCCAGCACCTAGTCTTCCTTGGCACATCGTGAGTGCTCGGGTCAGGCTGTGCCACATCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000470091.1 ENST00000477702.1 ENST00000659479.1 |
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| CDS CCA 72 bp | AATTTGAACTCTGATCCACCCCGATTCTGGGACCTGTaGAGCTCCAGGTACCGAGAGCTGGCTCTCGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: NLNSDPPRFWDL*SSRYRELALAW Trigger: CCAGGCGAGAGCCAGCTCTCGGTACCTGGAGCTCCACAGGTCCCAGAATCGGGGTGGATCAGAGTTCAAATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000480237.1 |
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| CDS CCA 72 bp | CTGAGTACATGTAGGATAAATGACCCCAGGCAAGGCTaGGTGGATGTGGCACAGCCTGACCCGAGCACTCAC | + |
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Preference number: 6 (lower is better) Translates to: LSTCRINDPRQG*VDVAQPDPSTH Trigger: GTGAGTGCTCGGGTCAGGCTGTGCCACATCCACCCAGCCTTGCCTGGGGTCATTTATCCTACATGTACTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000470091.1 ENST00000477702.1 ENST00000659479.1 |
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| CDS TCA 72 bp | GAGGAGCGTGTGCAGGACTTAGCTTTGCTCTTGCACTaGGATGCCTCCAGTCGGATGGATAGGAACCAGCCT | + |
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Preference number: 6 (lower is better) Translates to: EERVQDLALLLH*DASSRMDRNQP Trigger: AGGCTGGTTCCTATCCATCCGACTGGAGGCATCTCAGTGCAAGAGCAAAGCTAAGTCCTGCACACGCTCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000480237.1 ENST00000489452.1 |
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| CDS CAA 72 bp | AAGCATCTGCCTGCCCCTCAGTTTCTGAGCTCCCACTaGACACCAAGTGTTGTGGGGGTACAAATTTGGGTC | + |
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Preference number: 6 (lower is better) Translates to: KHLPAPQFLSSH*TPSVVGVQIWV Trigger: GACCCAAATTTGTACCCCCACAACACTTGGTGTCAAGTGGGAGCTCAGAAACTGAGGGGCAGGCAGATGCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000659479.1 |
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| CDS TCA 72 bp | CAGAGTGACTGGGAGTTTATTTGGGGGATATTGATCTaGAGGGTGAATAGGAGTCTCCAGGCAGGCACATGG | + |
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Preference number: 6 (lower is better) Translates to: QSDWEFIWGILI*RVNRSLQAGTW Trigger: CCATGTGCCTGCCTGGAGACTCCTATTCACCCTTCAGATCAATATCCCCCAAATAAACTCCCAGTCACTCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000470091.1 ENST00000477702.1 ENST00000659479.1 |
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| CDS TCA 72 bp | TGCAGCACGCAATTAGACAGTAGCAGAACCAGAATTTaGACTCTGATCCACCCCGATTCTGGGACCTGTGGA | + |
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Preference number: 6 (lower is better) Translates to: CSTQLDSSRTRI*TLIHPDSGTCG Trigger: TCCACAGGTCCCAGAATCGGGGTGGATCAGAGTTCAAATTCTGGTTCTGCTACTGTCTAATTGCGTGCTGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000480237.1 |
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| CDS CAA 72 bp | CCAAGTGTTGTGGGGGTACAAATTTGGGTCAACATTTaGTGTAGCAGAACTCTGGGGACCAACCAGAACTCC | + |
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Preference number: 6 (lower is better) Translates to: PSVVGVQIWVNI*CSRTLGTNQNS Trigger: GGAGTTCTGGTTGGTCCCCAGAGTTCTGCTACACAAAATGTTGACCCAAATTTGTACCCCCACAACACTTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000659479.1 |
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| CDS CAA 90 bp | GCTGGGGAGGCAGAGGTGATCAAGATCAATCTGGTATCTTTCCTTTaGGAGCTTCCATACTGGTGGAGCAGAGGGCCATTAAACAAATAC | + |
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Preference number: 6 (lower is better) Translates to: AGEAEVIKINLVSFL*ELPYWWSRGPLNKY Trigger: GTATTTGTTTAATGGCCCTCTGCTCCACCAGTATGGAAGCTCCAAAAGGAAAGATACCAGATTGATCTTGATCACCTCTGCCTCCCCAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000477702.1 ENST00000659479.1 |
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| CDS CAA 90 bp | CTGAGCCAGGCAGTAAATGATGGCACTGTCAGTTGTACACGACTGTaGAAACAAACACAGACTGTAATCATCGTGCTGTACGGGGAGAAA | + |
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Preference number: 6 (lower is better) Translates to: LSQAVNDGTVSCTRL*KQTQTVIIVLYGEK Trigger: TTTCTCCCCGTACAGCACGATGATTACAGTCTGTGTTTGTTTCAACAGTCGTGTACAACTGACAGTGCCATCATTTACTGCCTGGCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000480237.1 |
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| CDS CAA 72 bp | GCAGAGGTGATCAAGATCAATCTGGTATCTTTCCTTTaGGAGCTTCCATACTGGTGGAGCAGAGGGCCATTA | + |
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Preference number: 6 (lower is better) Translates to: AEVIKINLVSFL*ELPYWWSRGPL Trigger: TAATGGCCCTCTGCTCCACCAGTATGGAAGCTCCAAAAGGAAAGATACCAGATTGATCTTGATCACCTCTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000477702.1 ENST00000659479.1 |
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| CDS CAA 72 bp | CCAAGGGTTATTACTCCCATTTCCCAGATGAAGAGATaGAGTCCCTGCAGCACGCAATTAGACAGTAGCAGA | + |
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Preference number: 6 (lower is better) Translates to: PRVITPISQMKR*SPCSTQLDSSR Trigger: TCTGCTACTGTCTAATTGCGTGCTGCAGGGACTCAATCTCTTCATCTGGGAAATGGGAGTAATAACCCTTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000480237.1 |
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| CDS GCA 72 bp | ATTACTCCCATTTCCCAGATGAAGAGATTGAGTCCCTaGAGCACGCAATTAGACAGTAGCAGAACCAGAATT | + |
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Preference number: 6 (lower is better) Translates to: ITPISQMKRLSP*STQLDSSRTRI Trigger: AATTCTGGTTCTGCTACTGTCTAATTGCGTGCTGCAGGGACTCAATCTCTTCATCTGGGAAATGGGAGTAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000480237.1 |
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| CDS CCA 72 bp | GCTGAGCATATAAATTTCCTGCGGGCCGGCCAGCATTaGGGATGTGTAATTGATTGCCTGCATTATAATAAA | + |
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Preference number: 6 (lower is better) Translates to: AEHINFLRAGQH*GCVIDCLHYNK Trigger: TTTATTATAATGCAGGCAATCAATTACACATCCCCAATGCTGGCCGGCCCGCAGGAAATTTATATGCTCAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000480237.1 |
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| CDS TCA 72 bp | TCATCGTGCTGTACGGGGAGAAAGACATTTGGCAAATaGGATTCCATTTTCACATTGGTTTGTGCTGAGCAT | + |
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Preference number: 6 (lower is better) Translates to: SSCCTGRKTFGK*DSIFTLVCAEH Trigger: ATGCTCAGCACAAACCAATGTGAAAATGGAATCTCATTTGCCAAATGTCTTTCTCCCCGTACAGCACGATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000480237.1 |
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| CDS CCA 72 bp | AATCTGGTATCTTTCCTTTTGGAGCTTCCATACTGGTaGAGCAGAGGGCCATTAAACAAATACACGTGTCAA | + |
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Preference number: 6 (lower is better) Translates to: NLVSFLLELPYW*SRGPLNKYTCQ Trigger: TTGACACGTGTATTTGTTTAATGGCCCTCTGCTCCACCAGTATGGAAGCTCCAAAAGGAAAGATACCAGATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000477702.1 ENST00000659479.1 |
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| CDS CAA 72 bp | GCAGTAAATGATGGCACTGTCAGTTGTACACGACTGTaGAAACAAACACAGACTGTAATCATCGTGCTGTAC | + |
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Preference number: 6 (lower is better) Translates to: AVNDGTVSCTRL*KQTQTVIIVLY Trigger: GTACAGCACGATGATTACAGTCTGTGTTTGTTTCAACAGTCGTGTACAACTGACAGTGCCATCATTTACTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000480237.1 |
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