Pregenerated sensors for LINC00167 (Homo sapiens)
Ensembl gene IDs: ENSG00000233220Ensembl transcript IDs: ENST00000530583.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CGCTCCCCGAAGGTCCGAAGGTCCAAGGTCTCTCTGCCATCTAGCTaGCCTGCGTATTGCCTGCCAGTGGGTAGTTGGAGCTGGGTATCT | + |
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Preference number: 5 (lower is better) Translates to: RSPKVRRSKVSLPSS*PAYCLPVGSWSWVS Trigger: AGATACCCAGCTCCAACTACCCACTGGCAGGCAATACGCAGGGCAGCTAGATGGCAGAGAGACCTTGGACCTTCGGACCTTCGGGGAGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000530583.1 |
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| CDS GCA 90 bp | GAAGGGAAAACCGCTCCCCGAAGGTCCGAAGGTCCAAGGTCTCTCTaGCATCTAGCTGCCCTGCGTATTGCCTGCCAGTGGGTAGTTGGA | + |
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Preference number: 5 (lower is better) Translates to: EGKTAPRRSEGPRSL*HLAALRIACQWVVG Trigger: TCCAACTACCCACTGGCAGGCAATACGCAGGGCAGCTAGATGGCAGAGAGACCTTGGACCTTCGGACCTTCGGGGAGCGGTTTTCCCTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000530583.1 |
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| CDS TCA 90 bp | GGGTTTTCTGATTGGCTGAGAGTAGAAACGCAGGCGAGCGCCGCCTaGGACCCGCTCTGCGATTGGGTTTTACACGAACAGCAGAGCACG | + |
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Preference number: 5 (lower is better) Translates to: GFSDWLRVETQASAA*DPLCDWVLHEQQST Trigger: CGTGCTCTGCTGTTCGTGTAAAACCCAATCGCAGAGCGGGTCTCAGGCGGCGCTCGCCTGCGTTTCTACTCTCAGCCAATCAGAAAACCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000530583.1 |
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| CDS GCA 90 bp | GAAGGTCCAAGGTCTCTCTGCCATCTAGCTGCCCTGCGTATTGCCTaGCAGTGGGTAGTTGGAGCTGGGTATCTCTCCAAAGCTGGGCTC | + |
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Preference number: 5 (lower is better) Translates to: EGPRSLCHLAALRIA*QWVVGAGYLSKAGL Trigger: GAGCCCAGCTTTGGAGAGATACCCAGCTCCAACTACCCACTGGCAGGCAATACGCAGGGCAGCTAGATGGCAGAGAGACCTTGGACCTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000530583.1 |
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| CDS GCA 90 bp | GTCCGAAGGTCCAAGGTCTCTCTGCCATCTAGCTGCCCTGCGTATTaGCTGCCAGTGGGTAGTTGGAGCTGGGTATCTCTCCAAAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: VRRSKVSLPSSCPAY*LPVGSWSWVSLQSW Trigger: CCAGCTTTGGAGAGATACCCAGCTCCAACTACCCACTGGCAGGCAATACGCAGGGCAGCTAGATGGCAGAGAGACCTTGGACCTTCGGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000530583.1 |
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| CDS CCA 90 bp | TCTCTGCCATCTAGCTGCCCTGCGTATTGCCTGCCAGTGGGTAGTTaGAGCTGGGTATCTCTCCAAAGCTGGGCTCTTGGCTGCCCTTTG | + |
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Preference number: 5 (lower is better) Translates to: SLPSSCPAYCLPVGS*SWVSLQSWALGCPL Trigger: CAAAGGGCAGCCAAGAGCCCAGCTTTGGAGAGATACCCAGCTCCAACTACCCACTGGCAGGCAATACGCAGGGCAGCTAGATGGCAGAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000530583.1 |
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| CDS CCA 90 bp | CCAAGGTCTCTCTGCCATCTAGCTGCCCTGCGTATTGCCTGCCAGTaGGTAGTTGGAGCTGGGTATCTCTCCAAAGCTGGGCTCTTGGCT | + |
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Preference number: 5 (lower is better) Translates to: PRSLCHLAALRIACQ*VVGAGYLSKAGLLA Trigger: AGCCAAGAGCCCAGCTTTGGAGAGATACCCAGCTCCAACTACCCACTGGCAGGCAATACGCAGGGCAGCTAGATGGCAGAGAGACCTTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000530583.1 |
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| CDS CCA 72 bp | AAAAAGAGGCGCAGTGAAAGCGCTCTCAAGGTGCGGTaGGTCAGGGTGATAGGCGGCGCCCGGCCGCTCCCT | + |
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Preference number: 6 (lower is better) Translates to: KKRRSESALKVR*VRVIGGARPLP Trigger: AGGGAGCGGCCGGGCGCCGCCTATCACCCTGACCCACCGCACCTTGAGAGCGCTTTCACTGCGCCTCTTTTT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000530583.1 |
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| CDS GCA 72 bp | ACCGCTCCCCGAAGGTCCGAAGGTCCAAGGTCTCTCTaGCATCTAGCTGCCCTGCGTATTGCCTGCCAGTGG | + |
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Preference number: 6 (lower is better) Translates to: TAPRRSEGPRSL*HLAALRIACQW Trigger: CCACTGGCAGGCAATACGCAGGGCAGCTAGATGGCAGAGAGACCTTGGACCTTCGGACCTTCGGGGAGCGGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000530583.1 |
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| CDS TCA 72 bp | GATTGGCTGAGAGTAGAAACGCAGGCGAGCGCCGCCTaGGACCCGCTCTGCGATTGGGTTTTACACGAACAG | + |
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Preference number: 6 (lower is better) Translates to: DWLRVETQASAA*DPLCDWVLHEQ Trigger: CTGTTCGTGTAAAACCCAATCGCAGAGCGGGTCTCAGGCGGCGCTCGCCTGCGTTTCTACTCTCAGCCAATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000530583.1 |
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| CDS GCA 72 bp | AAGGTCCGAAGGTCCAAGGTCTCTCTGCCATCTAGCTaGCCTGCGTATTGCCTGCCAGTGGGTAGTTGGAGC | + |
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Preference number: 6 (lower is better) Translates to: KVRRSKVSLPSS*PAYCLPVGSWS Trigger: GCTCCAACTACCCACTGGCAGGCAATACGCAGGGCAGCTAGATGGCAGAGAGACCTTGGACCTTCGGACCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000530583.1 |
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| CDS CCA 72 bp | CTCTGCCATCTAGCTGCCCTGCGTATTGCCTGCCAGTaGGTAGTTGGAGCTGGGTATCTCTCCAAAGCTGGG | + |
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Preference number: 6 (lower is better) Translates to: LCHLAALRIACQ*VVGAGYLSKAG Trigger: CCCAGCTTTGGAGAGATACCCAGCTCCAACTACCCACTGGCAGGCAATACGCAGGGCAGCTAGATGGCAGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000530583.1 |
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| CDS GCA 72 bp | TCCAAGGTCTCTCTGCCATCTAGCTGCCCTGCGTATTaGCTGCCAGTGGGTAGTTGGAGCTGGGTATCTCTC | + |
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Preference number: 6 (lower is better) Translates to: SKVSLPSSCPAY*LPVGSWSWVSL Trigger: GAGAGATACCCAGCTCCAACTACCCACTGGCAGGCAATACGCAGGGCAGCTAGATGGCAGAGAGACCTTGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000530583.1 |
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| CDS CAA 72 bp | AACGCAGGCGAGCGCCGCCTGAGACCCGCTCTGCGATaGGGTTTTACACGAACAGCAGAGCACGAAATAAAG | + |
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Preference number: 6 (lower is better) Translates to: NAGERRLRPALR*GFTRTAEHEIK Trigger: CTTTATTTCGTGCTCTGCTGTTCGTGTAAAACCCAATCGCAGAGCGGGTCTCAGGCGGCGCTCGCCTGCGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000530583.1 |
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| CDS CAA 90 bp | GAGAGTAGAAACGCAGGCGAGCGCCGCCTGAGACCCGCTCTGCGATaGGGTTTTACACGAACAGCAGAGCACGAAATAAAGAGGCCTTCA | + |
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Preference number: 6 (lower is better) Translates to: ESRNAGERRLRPALR*GFTRTAEHEIKRPS Trigger: TGAAGGCCTCTTTATTTCGTGCTCTGCTGTTCGTGTAAAACCCAATCGCAGAGCGGGTCTCAGGCGGCGCTCGCCTGCGTTTCTACTCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000530583.1 |
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| CDS GCA 72 bp | AGGTCTCTCTGCCATCTAGCTGCCCTGCGTATTGCCTaGCAGTGGGTAGTTGGAGCTGGGTATCTCTCCAAA | + |
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Preference number: 6 (lower is better) Translates to: RSLCHLAALRIA*QWVVGAGYLSK Trigger: TTTGGAGAGATACCCAGCTCCAACTACCCACTGGCAGGCAATACGCAGGGCAGCTAGATGGCAGAGAGACCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000530583.1 |
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