Pregenerated sensors for LINC00165 (Homo sapiens)
Ensembl gene IDs: ENSG00000261706Ensembl transcript IDs: ENST00000569966.1
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGCCTGCAGGGTGGGGCTATCGGGCCTCTGCCACCTGCTTCGTGGTaGGACTCCTGGGCGCCCACAGCCTCCGCCTGGCAGGCCAGCCCA | + |
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Preference number: 5 (lower is better) Translates to: GLQGGAIGPLPPASW*DSWAPTASAWQASP Trigger: TGGGCTGGCCTGCCAGGCGGAGGCTGTGGGCGCCCAGGAGTCTCACCACGAAGCAGGTGGCAGAGGCCCGATAGCCCCACCCTGCAGGCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS GCA 90 bp | TTTAGGTGCCAGGTCCCGGCCTGCAGGGTGGGGCTATCGGGCCTCTaGCACCTGCTTCGTGGTGAGACTCCTGGGCGCCCACAGCCTCCG | + |
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Preference number: 5 (lower is better) Translates to: FRCQVPACRVGLSGL*HLLRGETPGRPQPP Trigger: CGGAGGCTGTGGGCGCCCAGGAGTCTCACCACGAAGCAGGTGGCAGAGGCCCGATAGCCCCACCCTGCAGGCCGGGACCTGGCACCTAAA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS CCA 90 bp | GTTCTTCCATCTCCCCGTTTAGGTGCCAGGTCCCGGCCTGCAGGGTaGGGCTATCGGGCCTCTGCCACCTGCTTCGTGGTGAGACTCCTG | + |
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Preference number: 5 (lower is better) Translates to: VLPSPRLGARSRPAG*GYRASATCFVVRLL Trigger: CAGGAGTCTCACCACGAAGCAGGTGGCAGAGGCCCGATAGCCCCACCCTGCAGGCCGGGACCTGGCACCTAAACGGGGAGATGGAAGAAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS GCA 90 bp | TTTCCATGTTCTTCCATCTCCCCGTTTAGGTGCCAGGTCCCGGCCTaGAGGGTGGGGCTATCGGGCCTCTGCCACCTGCTTCGTGGTGAG | + |
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Preference number: 5 (lower is better) Translates to: FPCSSISPFRCQVPA*RVGLSGLCHLLRGE Trigger: CTCACCACGAAGCAGGTGGCAGAGGCCCGATAGCCCCACCCTGCAGGCCGGGACCTGGCACCTAAACGGGGAGATGGAAGAACATGGAAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS GCA 90 bp | AACTTCTGGGGCCCGAGGCGTCCGAATGCTCGAGGAACGATGATCTaGAAAGCAGGATTCCGCAGCAAGTTGGTGCCCGCGGAAGCTGAG | + |
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Preference number: 5 (lower is better) Translates to: NFWGPRRPNARGTMI*KAGFRSKLVPAEAE Trigger: CTCAGCTTCCGCGGGCACCAACTTGCTGCGGAATCCTGCTTTGCAGATCATCGTTCCTCGAGCATTCGGACGCCTCGGGCCCCAGAAGTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS GCA 90 bp | CAGAGCTTTCTTGTTCTTGAACTTCTGGGGCCCGAGGCGTCCGAATaGTCGAGGAACGATGATCTGCAAAGCAGGATTCCGCAGCAAGTT | + |
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Preference number: 5 (lower is better) Translates to: QSFLVLELLGPEASE*SRNDDLQSRIPQQV Trigger: AACTTGCTGCGGAATCCTGCTTTGCAGATCATCGTTCCTCGAGCATTCGGACGCCTCGGGCCCCAGAAGTTCAAGAACAAGAAAGCTCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS CCA 90 bp | AGCCTCCGCCTGGCAGGCCAGCCCAACAGAGCCTGTTTCATCAGATaGTGTTTCCAGGAGCCAAATAACAAACACACTTTCTGGAAACAG | + |
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Preference number: 5 (lower is better) Translates to: SLRLAGQPNRACFIR*CFQEPNNKHTFWKQ Trigger: CTGTTTCCAGAAAGTGTGTTTGTTATTTGGCTCCTGGAAACACCATCTGATGAAACAGGCTCTGTTGGGCTGGCCTGCCAGGCGGAGGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS CCA 90 bp | TTCATCAGATGGTGTTTCCAGGAGCCAAATAACAAACACACTTTCTaGAAACAGCCAGGAGGAGCAGCCGTCTCCCAAGAGGGGAAGGAA | + |
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Preference number: 5 (lower is better) Translates to: FIRWCFQEPNNKHTF*KQPGGAAVSQEGKE Trigger: TTCCTTCCCCTCTTGGGAGACGGCTGCTCCTCCTGGCTGTTTCCAGAAAGTGTGTTTGTTATTTGGCTCCTGGAAACACCATCTGATGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS CCA 90 bp | TTTCTAAATAGAGGACATGATGCTGAGACTGGGGCTACATGGCCATaGTTGTGTGAGTGTGCGTGTGTGTGTGTTGTGTGTGTGTGTGTG | + |
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Preference number: 5 (lower is better) Translates to: FLNRGHDAETGATWP*LCECACVCVVCVCV Trigger: CACACACACACACACAACACACACACACGCACACTCACACAACCATGGCCATGTAGCCCCAGTCTCAGCATCATGTCCTCTATTTAGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS CCA 90 bp | CCAATATTTCTAAATAGAGGACATGATGCTGAGACTGGGGCTACATaGCCATGGTTGTGTGAGTGTGCGTGTGTGTGTGTTGTGTGTGTG | + |
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Preference number: 5 (lower is better) Translates to: PIFLNRGHDAETGAT*PWLCECACVCVVCV Trigger: CACACACACAACACACACACACGCACACTCACACAACCATGGCCATGTAGCCCCAGTCTCAGCATCATGTCCTCTATTTAGAAATATTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS GCA 90 bp | TTGTGTGTGTGTGTGTGCACGTATAAGTGCATGTGTGAGCATGTGTaGATGCGTGAGCGTGTCTGCATGAAACAGAGCTTTCTTGTTCTT | + |
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Preference number: 5 (lower is better) Translates to: LCVCVCTYKCMCEHV*MRERVCMKQSFLVL Trigger: AAGAACAAGAAAGCTCTGTTTCATGCAGACACGCTCACGCATGCACACATGCTCACACATGCACTTATACGTGCACACACACACACACAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS TCA 72 bp | GGTGGGGCTATCGGGCCTCTGCCACCTGCTTCGTGGTaGGACTCCTGGGCGCCCACAGCCTCCGCCTGGCAG | + |
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Preference number: 6 (lower is better) Translates to: GGAIGPLPPASW*DSWAPTASAWQ Trigger: CTGCCAGGCGGAGGCTGTGGGCGCCCAGGAGTCTCACCACGAAGCAGGTGGCAGAGGCCCGATAGCCCCACC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS CCA 72 bp | TCTCCCCGTTTAGGTGCCAGGTCCCGGCCTGCAGGGTaGGGCTATCGGGCCTCTGCCACCTGCTTCGTGGTG | + |
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Preference number: 6 (lower is better) Translates to: SPRLGARSRPAG*GYRASATCFVV Trigger: CACCACGAAGCAGGTGGCAGAGGCCCGATAGCCCCACCCTGCAGGCCGGGACCTGGCACCTAAACGGGGAGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS GCA 72 bp | TCTTCCATCTCCCCGTTTAGGTGCCAGGTCCCGGCCTaGAGGGTGGGGCTATCGGGCCTCTGCCACCTGCTT | + |
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Preference number: 6 (lower is better) Translates to: SSISPFRCQVPA*RVGLSGLCHLL Trigger: AAGCAGGTGGCAGAGGCCCGATAGCCCCACCCTGCAGGCCGGGACCTGGCACCTAAACGGGGAGATGGAAGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS GCA 72 bp | GGCCCGAGGCGTCCGAATGCTCGAGGAACGATGATCTaGAAAGCAGGATTCCGCAGCAAGTTGGTGCCCGCG | + |
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Preference number: 6 (lower is better) Translates to: GPRRPNARGTMI*KAGFRSKLVPA Trigger: CGCGGGCACCAACTTGCTGCGGAATCCTGCTTTGCAGATCATCGTTCCTCGAGCATTCGGACGCCTCGGGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS GCA 72 bp | CTTGTTCTTGAACTTCTGGGGCCCGAGGCGTCCGAATaGTCGAGGAACGATGATCTGCAAAGCAGGATTCCG | + |
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Preference number: 6 (lower is better) Translates to: LVLELLGPEASE*SRNDDLQSRIP Trigger: CGGAATCCTGCTTTGCAGATCATCGTTCCTCGAGCATTCGGACGCCTCGGGCCCCAGAAGTTCAAGAACAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS CAA 72 bp | GGACATGATGCTGAGACTGGGGCTACATGGCCATGGTaGTGTGAGTGTGCGTGTGTGTGTGTTGTGTGTGTG | + |
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Preference number: 6 (lower is better) Translates to: GHDAETGATWPW*CECACVCVVCV Trigger: CACACACACAACACACACACACGCACACTCACACAACCATGGCCATGTAGCCCCAGTCTCAGCATCATGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS CCA 72 bp | AGAGGACATGATGCTGAGACTGGGGCTACATGGCCATaGTTGTGTGAGTGTGCGTGTGTGTGTGTTGTGTGT | + |
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Preference number: 6 (lower is better) Translates to: RGHDAETGATWP*LCECACVCVVC Trigger: ACACACAACACACACACACGCACACTCACACAACCATGGCCATGTAGCCCCAGTCTCAGCATCATGTCCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS CAA 72 bp | GGAACGATGATCTGCAAAGCAGGATTCCGCAGCAAGTaGGTGCCCGCGGAAGCTGAGCATCAATTTGCTCTT | + |
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Preference number: 6 (lower is better) Translates to: GTMICKAGFRSK*VPAEAEHQFAL Trigger: AAGAGCAAATTGATGCTCAGCTTCCGCGGGCACCAACTTGCTGCGGAATCCTGCTTTGCAGATCATCGTTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS CAA 90 bp | CAGGATTCCGCAGCAAGTTGGTGCCCGCGGAAGCTGAGCATCAATTaGCTCTTAGGGAATTTTCCATGTTCTTCCATCTCCCCGTTTAGG | + |
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Preference number: 6 (lower is better) Translates to: QDSAASWCPRKLSIN*LLGNFPCSSISPFR Trigger: CCTAAACGGGGAGATGGAAGAACATGGAAAATTCCCTAAGAGCAAATTGATGCTCAGCTTCCGCGGGCACCAACTTGCTGCGGAATCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS CAA 90 bp | CTAAATAGAGGACATGATGCTGAGACTGGGGCTACATGGCCATGGTaGTGTGAGTGTGCGTGTGTGTGTGTTGTGTGTGTGTGTGTGCAC | + |
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Preference number: 6 (lower is better) Translates to: LNRGHDAETGATWPW*CECACVCVVCVCVH Trigger: GTGCACACACACACACACAACACACACACACGCACACTCACACAACCATGGCCATGTAGCCCCAGTCTCAGCATCATGTCCTCTATTTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS CAA 90 bp | AATGCTCGAGGAACGATGATCTGCAAAGCAGGATTCCGCAGCAAGTaGGTGCCCGCGGAAGCTGAGCATCAATTTGCTCTTAGGGAATTT | + |
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Preference number: 6 (lower is better) Translates to: NARGTMICKAGFRSK*VPAEAEHQFALREF Trigger: AAATTCCCTAAGAGCAAATTGATGCTCAGCTTCCGCGGGCACCAACTTGCTGCGGAATCCTGCTTTGCAGATCATCGTTCCTCGAGCATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS CCA 72 bp | CTGGCAGGCCAGCCCAACAGAGCCTGTTTCATCAGATaGTGTTTCCAGGAGCCAAATAACAAACACACTTTC | + |
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Preference number: 6 (lower is better) Translates to: LAGQPNRACFIR*CFQEPNNKHTF Trigger: GAAAGTGTGTTTGTTATTTGGCTCCTGGAAACACCATCTGATGAAACAGGCTCTGTTGGGCTGGCCTGCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS CCA 72 bp | CTAAATAGAGGACATGATGCTGAGACTGGGGCTACATaGCCATGGTTGTGTGAGTGTGCGTGTGTGTGTGTT | + |
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Preference number: 6 (lower is better) Translates to: LNRGHDAETGAT*PWLCECACVCV Trigger: AACACACACACACGCACACTCACACAACCATGGCCATGTAGCCCCAGTCTCAGCATCATGTCCTCTATTTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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| CDS CAA 72 bp | GCAGCAAGTTGGTGCCCGCGGAAGCTGAGCATCAATTaGCTCTTAGGGAATTTTCCATGTTCTTCCATCTCC | + |
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Preference number: 6 (lower is better) Translates to: AASWCPRKLSIN*LLGNFPCSSIS Trigger: GGAGATGGAAGAACATGGAAAATTCCCTAAGAGCAAATTGATGCTCAGCTTCCGCGGGCACCAACTTGCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569966.1 |
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