Pregenerated sensors for LINC00161 (Homo sapiens)
Ensembl gene IDs: ENSG00000226935Ensembl transcript IDs: ENST00000412526.5, ENST00000455939.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ACAGAAATGTATTGCCTCACAGTTCTAGAGGCTCAAAGTCCAAGATaGAGGTGCCAGCAGGATTGCTTTCTTCTGAAGGCTCTGAGGGAG | + |
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Preference number: 5 (lower is better) Translates to: TEMYCLTVLEAQSPR*RCQQDCFLLKALRE Trigger: CTCCCTCAGAGCCTTCAGAAGAAAGCAATCCTGCTGGCACCTTCATCTTGGACTTTGAGCCTCTAGAACTGTGAGGCAATACATTTCTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412526.5 |
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| CDS GCA 90 bp | CAGCAGGATTGCTTTCTTCTGAAGGCTCTGAGGGAGAATGTTTCATaGCTCTCTAGGCTTCTGGTGATTTTCTGTCAATCTTTGGTGTTC | + |
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Preference number: 5 (lower is better) Translates to: QQDCFLLKALRENVS*LSRLLVIFCQSLVF Trigger: GAACACCAAAGATTGACAGAAAATCACCAGAAGCCTAGAGAGGCATGAAACATTCTCCCTCAGAGCCTTCAGAAGAAAGCAATCCTGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412526.5 |
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| CDS CCA 90 bp | ACTGTAATTTCTACCTTCATCTTCACATGGTGTTCTCCTTATATGTaGACCTGTGTCCACATTTCCCCTTTTCACAGACACCAGTCACAT | + |
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Preference number: 5 (lower is better) Translates to: TVISTFIFTWCSPYM*TCVHISPFHRHQSH Trigger: ATGTGACTGGTGTCTGTGAAAAGGGGAAATGTGGACACAGGTCCACATATAAGGAGAACACCATGTGAAGATGAAGGTAGAAATTACAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000412526.5 |
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| CDS GCA 90 bp | CGATTTGTAGTCTATTTGGCTCTTCCCTCATATCCACAAGATGGCTaGTGCATGTCTACAGTTCTCTTCTTCCTAAGCCTAAAATATTTA | + |
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Preference number: 5 (lower is better) Translates to: RFVVYLALPSYPQDG*CMSTVLFFLSLKYL Trigger: TAAATATTTTAGGCTTAGGAAGAAGAGAACTGTAGACATGCAGCAGCCATCTTGTGGATATGAGGGAAGAGCCAAATAGACTACAAATCG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412526.5 |
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| CDS GCA 90 bp | TTTGTAGTCTATTTGGCTCTTCCCTCATATCCACAAGATGGCTGCTaGATGTCTACAGTTCTCTTCTTCCTAAGCCTAAAATATTTATCT | + |
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Preference number: 5 (lower is better) Translates to: FVVYLALPSYPQDGC*MSTVLFFLSLKYLS Trigger: AGATAAATATTTTAGGCTTAGGAAGAAGAGAACTGTAGACATGCAGCAGCCATCTTGTGGATATGAGGGAAGAGCCAAATAGACTACAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412526.5 |
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| CDS CAA 90 bp | CACAGTTCTAGAGGCTCAAAGTCCAAGATGAAGGTGCCAGCAGGATaGCTTTCTTCTGAAGGCTCTGAGGGAGAATGTTTCATGCCTCTC | + |
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Preference number: 6 (lower is better) Translates to: HSSRGSKSKMKVPAG*LSSEGSEGECFMPL Trigger: GAGAGGCATGAAACATTCTCCCTCAGAGCCTTCAGAAGAAAGCAATCCTGCTGGCACCTTCATCTTGGACTTTGAGCCTCTAGAACTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412526.5 |
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| CDS CAA 72 bp | AGAGGCTCAAAGTCCAAGATGAAGGTGCCAGCAGGATaGCTTTCTTCTGAAGGCTCTGAGGGAGAATGTTTC | + |
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Preference number: 6 (lower is better) Translates to: RGSKSKMKVPAG*LSSEGSEGECF Trigger: GAAACATTCTCCCTCAGAGCCTTCAGAAGAAAGCAATCCTGCTGGCACCTTCATCTTGGACTTTGAGCCTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412526.5 |
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| CDS TCA 72 bp | TATTGCCTCACAGTTCTAGAGGCTCAAAGTCCAAGATaGAGGTGCCAGCAGGATTGCTTTCTTCTGAAGGCT | + |
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Preference number: 6 (lower is better) Translates to: YCLTVLEAQSPR*RCQQDCFLLKA Trigger: AGCCTTCAGAAGAAAGCAATCCTGCTGGCACCTTCATCTTGGACTTTGAGCCTCTAGAACTGTGAGGCAATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412526.5 |
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| CDS CCA 72 bp | TGTAGTCTATTTGGCTCTTCCCTCATATCCACAAGATaGCTGCTGCATGTCTACAGTTCTCTTCTTCCTCAC | + |
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Preference number: 6 (lower is better) Translates to: CSLFGSSLISTR*LLHVYSSLLPH Trigger: GTGAGGAAGAAGAGAACTGTAGACATGCAGCAGCCATCTTGTGGATATGAGGGAAGAGCCAAATAGACTACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000455939.1 |
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| CDS CCA 72 bp | TCTACCTTCATCTTCACATGGTGTTCTCCTTATATGTaGACCTGTGTCCACATTTCCCCTTTTCACAGACAC | + |
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Preference number: 6 (lower is better) Translates to: STFIFTWCSPYM*TCVHISPFHRH Trigger: GTGTCTGTGAAAAGGGGAAATGTGGACACAGGTCCACATATAAGGAGAACACCATGTGAAGATGAAGGTAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000412526.5 |
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| CDS CCA 72 bp | TGTAGTCTATTTGGCTCTTCCCTCATATCCACAAGATaGCTGCTGCATGTCTACAGTTCTCTTCTTCCTAAG | + |
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Preference number: 6 (lower is better) Translates to: CSLFGSSLISTR*LLHVYSSLLPK Trigger: CTTAGGAAGAAGAGAACTGTAGACATGCAGCAGCCATCTTGTGGATATGAGGGAAGAGCCAAATAGACTACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412526.5 |
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| CDS CAA 90 bp | GCATGTCTACAGTTCTCTTCTTCCTCACTCAAGTATGACCTCATCTaGACTAATGACATCTTCAACAACCCTAACTCCAAACAATGTCAC | + |
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Preference number: 6 (lower is better) Translates to: ACLQFSSSSLKYDLI*TNDIFNNPNSKQCH Trigger: GTGACATTGTTTGGAGTTAGGGTTGTTGAAGATGTCATTAGTCAAGATGAGGTCATACTTGAGTGAGGAAGAAGAGAACTGTAGACATGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000455939.1 |
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| CDS CAA 72 bp | CAGTTCTCTTCTTCCTCACTCAAGTATGACCTCATCTaGACTAATGACATCTTCAACAACCCTAACTCCAAA | + |
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Preference number: 6 (lower is better) Translates to: QFSSSSLKYDLI*TNDIFNNPNSK Trigger: TTTGGAGTTAGGGTTGTTGAAGATGTCATTAGTCAAGATGAGGTCATACTTGAGTGAGGAAGAAGAGAACTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000455939.1 |
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