Pregenerated sensors for LINC00160 (Homo sapiens)
Ensembl gene IDs: ENSG00000230978Ensembl transcript IDs: ENST00000430635.1, ENST00000651753.1
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GTCACTCAGCAGCCTCCTGGGGCCAAGCGCATCCAGGCCAGGCTTTaGTTCCAAGCACGAAGTAGACCATGGCGTTGGGTTGACGTTTTC | + |
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Preference number: 5 (lower is better) Translates to: VTQQPPGAKRIQARL*FQARSRPWRWVDVF Trigger: GAAAACGTCAACCCAACGCCATGGTCTACTTCGTGCTTGGAAGCAAAGCCTGGCCTGGATGCGCTTGGCCCCAGGAGGCTGCTGAGTGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000651753.1 |
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| CDS CCA 90 bp | AGGAAGAAAGAGTGGCAGACTTCTCATGGGCTGATGTGCCAAGAATaGCTGAGGTTGGGTCTCAGTGGATGGCAGGGCTTGCAGGGAAGG | + |
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Preference number: 5 (lower is better) Translates to: RKKEWQTSHGLMCQE*LRLGLSGWQGLQGR Trigger: CCTTCCCTGCAAGCCCTGCCATCCACTGAGACCCAACCTCAGCCATTCTTGGCACATCAGCCCATGAGAAGTCTGCCACTCTTTCTTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000430635.1 ENST00000651753.1 |
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| CDS CCA 90 bp | ATAACTGTATTGAAAACAGTCCGGGGTCTGGACACCTGGTCCCTCTaGCTGGCCAGGTCTTGGTCCTTGGACTACCATCTAGTCTGTGCC | + |
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Preference number: 5 (lower is better) Translates to: ITVLKTVRGLDTWSL*LARSWSLDYHLVCA Trigger: GGCACAGACTAGATGGTAGTCCAAGGACCAAGACCTGGCCAGCCAGAGGGACCAGGTGTCCAGACCCCGGACTGTTTTCAATACAGTTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000430635.1 ENST00000651753.1 |
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| CDS GCA 90 bp | GCTTTGCTTAGGAAGAAAGAGTGGCAGACTTCTCATGGGCTGATGTaGCAAGAATGGCTGAGGTTGGGTCTCAGTGGATGGCAGGGCTTG | + |
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Preference number: 5 (lower is better) Translates to: ALLRKKEWQTSHGLM*QEWLRLGLSGWQGL Trigger: CAAGCCCTGCCATCCACTGAGACCCAACCTCAGCCATTCTTGGCACATCAGCCCATGAGAAGTCTGCCACTCTTTCTTCCTAAGCAAAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000430635.1 ENST00000651753.1 |
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| CDS GCA 90 bp | AGCCTCAAGCAATTTGTCATGACTCAGGTGGTTGGGAAACAAGTGTaGTCTCAGGACAGCTTGACATGTCACTCAGCAGCCTCCTGGGGC | + |
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Preference number: 5 (lower is better) Translates to: SLKQFVMTQVVGKQV*SQDSLTCHSAASWG Trigger: GCCCCAGGAGGCTGCTGAGTGACATGTCAAGCTGTCCTGAGAGCACACTTGTTTCCCAACCACCTGAGTCATGACAAATTGCTTGAGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000651753.1 |
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| CDS TCA 90 bp | GCAGGGCTTGCAGGGAAGGCAGCAGACAAAACCCTGGAAATCTTGTaGTTCATAGTTGACAACAATCCATGCGTGGTTGGGGTTCTCGAA | + |
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Preference number: 5 (lower is better) Translates to: AGLAGKAADKTLEIL*FIVDNNPCVVGVLE Trigger: TTCGAGAACCCCAACCACGCATGGATTGTTGTCAACTATGAATCACAAGATTTCCAGGGTTTTGTCTGCTGCCTTCCCTGCAAGCCCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000430635.1 ENST00000651753.1 |
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| CDS CCA 90 bp | TTTCATTGTATAACTGTATTGAAAACAGTCCGGGGTCTGGACACCTaGTCCCTCTGGCTGGCCAGGTCTTGGTCCTTGGACTACCATCTA | + |
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Preference number: 5 (lower is better) Translates to: FHCITVLKTVRGLDT*SLWLARSWSLDYHL Trigger: TAGATGGTAGTCCAAGGACCAAGACCTGGCCAGCCAGAGGGACCAGGTGTCCAGACCCCGGACTGTTTTCAATACAGTTATACAATGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000430635.1 ENST00000651753.1 |
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| CDS TCA 90 bp | ACTGAAGAGAATGGGTGGTTGGCTGTAGATCCACCATTCGGTGATTaGTTCTGGAAGCATCTGTCTGGTAGGGAGGGCGAGAAGAACTAT | + |
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Preference number: 5 (lower is better) Translates to: TEENGWLAVDPPFGD*FWKHLSGREGEKNY Trigger: ATAGTTCTTCTCGCCCTCCCTACCAGACAGATGCTTCCAGAATCAATCACCGAATGGTGGATCTACAGCCAACCACCCATTCTCTTCAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000651753.1 |
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| CDS CCA 90 bp | TCTCCTCAAACCAGTAGGCAGCTTCCATACAGCCTCACAGACAGGTaGCCCAGGAGTGACTTTATCCACATTTTTCTCCCAAAAATGGCT | + |
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Preference number: 5 (lower is better) Translates to: SPQTSRQLPYSLTDR*PRSDFIHIFLPKMA Trigger: AGCCATTTTTGGGAGAAAAATGTGGATAAAGTCACTCCTGGGCCACCTGTCTGTGAGGCTGTATGGAAGCTGCCTACTGGTTTGAGGAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000430635.1 ENST00000651753.1 |
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| CDS GCA 72 bp | CAGCCTCCTGGGGCCAAGCGCATCCAGGCCAGGCTTTaGTTCCAAGCACGAAGTAGACCATGGCGTTGGGTT | + |
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Preference number: 6 (lower is better) Translates to: QPPGAKRIQARL*FQARSRPWRWV Trigger: AACCCAACGCCATGGTCTACTTCGTGCTTGGAAGCAAAGCCTGGCCTGGATGCGCTTGGCCCCAGGAGGCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000651753.1 |
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| CDS CAA 90 bp | GAGTGGCAGACTTCTCATGGGCTGATGTGCCAAGAATGGCTGAGGTaGGGTCTCAGTGGATGGCAGGGCTTGCAGGGAAGGCAGCAGACA | + |
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Preference number: 6 (lower is better) Translates to: EWQTSHGLMCQEWLR*GLSGWQGLQGRQQT Trigger: TGTCTGCTGCCTTCCCTGCAAGCCCTGCCATCCACTGAGACCCAACCTCAGCCATTCTTGGCACATCAGCCCATGAGAAGTCTGCCACTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000430635.1 ENST00000651753.1 |
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| CDS CAA 90 bp | CGGGGTCTGGACACCTGGTCCCTCTGGCTGGCCAGGTCTTGGTCCTaGGACTACCATCTAGTCTGTGCCTCAGCTGTTTTGCTGGCTTTT | + |
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Preference number: 6 (lower is better) Translates to: RGLDTWSLWLARSWS*DYHLVCASAVLLAF Trigger: AAAAGCCAGCAAAACAGCTGAGGCACAGACTAGATGGTAGTCCAAGGACCAAGACCTGGCCAGCCAGAGGGACCAGGTGTCCAGACCCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000430635.1 ENST00000651753.1 |
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| CDS TCA 72 bp | AGGTGGTTGGGAAACAAGTGTGCTCTCAGGACAGCTTaGCATGTCACTCAGCAGCCTCCTGGGGCCAAGCGC | + |
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Preference number: 6 (lower is better) Translates to: RWLGNKCALRTA*HVTQQPPGAKR Trigger: GCGCTTGGCCCCAGGAGGCTGCTGAGTGACATGTCAAGCTGTCCTGAGAGCACACTTGTTTCCCAACCACCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000651753.1 |
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| CDS CAA 72 bp | CAGGTGGTTGGGAAACAAGTGTGCTCTCAGGACAGCTaGACATGTCACTCAGCAGCCTCCTGGGGCCAAGCG | + |
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Preference number: 6 (lower is better) Translates to: QVVGKQVCSQDS*TCHSAASWGQA Trigger: CGCTTGGCCCCAGGAGGCTGCTGAGTGACATGTCAAGCTGTCCTGAGAGCACACTTGTTTCCCAACCACCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000651753.1 |
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| CDS CAA 72 bp | GACACCTGGTCCCTCTGGCTGGCCAGGTCTTGGTCCTaGGACTACCATCTAGTCTGTGCCTCAGCTGTTTTG | + |
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Preference number: 6 (lower is better) Translates to: DTWSLWLARSWS*DYHLVCASAVL Trigger: CAAAACAGCTGAGGCACAGACTAGATGGTAGTCCAAGGACCAAGACCTGGCCAGCCAGAGGGACCAGGTGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000430635.1 ENST00000651753.1 |
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| CDS CCA 72 bp | ATAACTGTATTGAAAACAGTCCGGGGTCTGGACACCTaGTCCCTCTGGCTGGCCAGGTCTTGGTCCTTGGAC | + |
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Preference number: 6 (lower is better) Translates to: ITVLKTVRGLDT*SLWLARSWSLD Trigger: GTCCAAGGACCAAGACCTGGCCAGCCAGAGGGACCAGGTGTCCAGACCCCGGACTGTTTTCAATACAGTTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000430635.1 ENST00000651753.1 |
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| CDS CAA 90 bp | AATGGCTTTTGTGTCCAGGAGCTCCAGGCCCTGAAGGATGCTGCTTaGCTTAGGAAGAAAGAGTGGCAGACTTCTCATGGGCTGATGTGC | + |
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Preference number: 6 (lower is better) Translates to: NGFCVQELQALKDAA*LRKKEWQTSHGLMC Trigger: GCACATCAGCCCATGAGAAGTCTGCCACTCTTTCTTCCTAAGCAAAGCAGCATCCTTCAGGGCCTGGAGCTCCTGGACACAAAAGCCATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000430635.1 ENST00000651753.1 |
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| CDS CCA 72 bp | ACCAGTAGGCAGCTTCCATACAGCCTCACAGACAGGTaGCCCAGGAGTGACTTTATCCACATTTTTCTCCCA | + |
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Preference number: 6 (lower is better) Translates to: TSRQLPYSLTDR*PRSDFIHIFLP Trigger: TGGGAGAAAAATGTGGATAAAGTCACTCCTGGGCCACCTGTCTGTGAGGCTGTATGGAAGCTGCCTACTGGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000430635.1 ENST00000651753.1 |
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| CDS GCA 72 bp | CAATTTGTCATGACTCAGGTGGTTGGGAAACAAGTGTaGTCTCAGGACAGCTTGACATGTCACTCAGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: QFVMTQVVGKQV*SQDSLTCHSAA Trigger: GGCTGCTGAGTGACATGTCAAGCTGTCCTGAGAGCACACTTGTTTCCCAACCACCTGAGTCATGACAAATTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000651753.1 |
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| CDS TCA 72 bp | GTCCTTGGACCAGCAGCATCATATCATCTCAGTGACTaGAGAGAATGGGTGGTTGGCTGTAGATCCACCATT | + |
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Preference number: 6 (lower is better) Translates to: VLGPAASYHLSD*REWVVGCRSTI Trigger: AATGGTGGATCTACAGCCAACCACCCATTCTCTTCAGTCACTGAGATGATATGATGCTGCTGGTCCAAGGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000430635.1 ENST00000651753.1 |
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| CDS CAA 90 bp | AGGCCAGGCTTTGCTTCCAAGCACGAAGTAGACCATGGCGTTGGGTaGACGTTTTCACATTGTAACCGTAAATTCTCTGTGACCCATTTC | + |
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Preference number: 6 (lower is better) Translates to: RPGFASKHEVDHGVG*TFSHCNRKFSVTHF Trigger: GAAATGGGTCACAGAGAATTTACGGTTACAATGTGAAAACGTCAACCCAACGCCATGGTCTACTTCGTGCTTGGAAGCAAAGCCTGGCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000651753.1 |
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| CDS TCA 72 bp | AATGGGTGGTTGGCTGTAGATCCACCATTCGGTGATTaGTTCTGGAAGCATCTGTCTTGTTTTTCAGCCACC | + |
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Preference number: 6 (lower is better) Translates to: NGWLAVDPPFGD*FWKHLSCFSAT Trigger: GGTGGCTGAAAAACAAGACAGATGCTTCCAGAATCAATCACCGAATGGTGGATCTACAGCCAACCACCCATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000430635.1 |
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| CDS TCA 72 bp | GACTTTACTCTGGTACAAGCCTCAAGCAATTTGTCATaGCTCAGGTGGTTGGGAAACAAGTGTGCTCTCAGG | + |
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Preference number: 6 (lower is better) Translates to: DFTLVQASSNLS*LRWLGNKCALR Trigger: CCTGAGAGCACACTTGTTTCCCAACCACCTGAGTCATGACAAATTGCTTGAGGCTTGTACCAGAGTAAAGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000651753.1 |
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| CDS CCA 72 bp | TACAAGCCTCAAGCAATTTGTCATGACTCAGGTGGTTaGGAAACAAGTGTGCTCTCAGGACAGCTTGACATG | + |
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Preference number: 6 (lower is better) Translates to: YKPQAICHDSGG*ETSVLSGQLDM Trigger: CATGTCAAGCTGTCCTGAGAGCACACTTGTTTCCCAACCACCTGAGTCATGACAAATTGCTTGAGGCTTGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000651753.1 |
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| CDS CCA 72 bp | AGGGAGGGCGAGAAGAACTATTTTCAGACTTTACTCTaGTACAAGCCTCAAGCAATTTGTCATGACTCAGGT | + |
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Preference number: 6 (lower is better) Translates to: REGEKNYFQTLL*YKPQAICHDSG Trigger: ACCTGAGTCATGACAAATTGCTTGAGGCTTGTACCAGAGTAAAGTCTGAAAATAGTTCTTCTCGCCCTCCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000651753.1 |
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| CDS CAA 72 bp | TTTGCTTCCAAGCACGAAGTAGACCATGGCGTTGGGTaGACGTTTTCACATTGTAACCGTAAATTCTCTGTG | + |
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Preference number: 6 (lower is better) Translates to: FASKHEVDHGVG*TFSHCNRKFSV Trigger: CACAGAGAATTTACGGTTACAATGTGAAAACGTCAACCCAACGCCATGGTCTACTTCGTGCTTGGAAGCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000651753.1 |
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| CDS TCA 72 bp | AGCAGACAAAACCCTGGAAATCTTGTGATTCATAGTTaGCAACAATCCATGCGTGGTTGGGGTTCTCGAAAT | + |
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Preference number: 6 (lower is better) Translates to: SRQNPGNLVIHS*QQSMRGWGSRN Trigger: ATTTCGAGAACCCCAACCACGCATGGATTGTTGTCAACTATGAATCACAAGATTTCCAGGGTTTTGTCTGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000430635.1 ENST00000651753.1 |
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