Pregenerated sensors for LINC00159 (Homo sapiens)
Ensembl gene IDs: ENSG00000230323Ensembl transcript IDs: ENST00000411605.5, ENST00000414877.1, ENST00000658887.1
Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TCCAGTACCAGTTCCGCACATCACACCATAGAACTGACACAGCGATaGCACACTGCCTGCTGCTGGGCTTACACACCCAGAGACACAACT | + |
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Preference number: 5 (lower is better) Translates to: SSTSSAHHTIELTQR*HTACCWAYTPRDTT Trigger: AGTTGTGTCTCTGGGTGTGTAAGCCCAGCAGCAGGCAGTGTGTCATCGCTGTGTCAGTTCTATGGTGTGATGTGCGGAACTGGTACTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000411605.5 ENST00000414877.1 ENST00000658887.1 |
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| CDS CCA 90 bp | GGGAGGCCTCACAATCATGGCAGAAGGAGAAAGGCACGTCTTCCATaGCAGCAGACTACAGAGAACGAGAGCCAAGCAAAAGTGGAAACT | + |
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Preference number: 5 (lower is better) Translates to: GRPHNHGRRRKARLP*QQTTENESQAKVET Trigger: AGTTTCCACTTTTGCTTGGCTCTCGTTCTCTGTAGTCTGCTGCCATGGAAGACGTGCCTTTCTCCTTCTGCCATGATTGTGAGGCCTCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658887.1 |
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| CDS CCA 90 bp | CTTCTGAGCTGGCATTTCCATATGATATCAGTAGTTCCACGTGGCTaGGGAGGCCTCACAATCATGGCAGAAGGAGAAAGGCACGTCTTC | + |
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Preference number: 5 (lower is better) Translates to: LLSWHFHMISVVPRG*GGLTIMAEGERHVF Trigger: GAAGACGTGCCTTTCTCCTTCTGCCATGATTGTGAGGCCTCCCCAGCCACGTGGAACTACTGATATCATATGGAAATGCCAGCTCAGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658887.1 |
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| CDS TCA 90 bp | CACACCCAGAGACACAACTGGGTTTTGGGAGCCATTCTGCCCAAATaGGGTCCTCCTTCTGTCAGTCAATTCCTGAATTATCAAAGCTCA | + |
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Preference number: 5 (lower is better) Translates to: HTQRHNWVLGAILPK*GPPSVSQFLNYQSS Trigger: TGAGCTTTGATAATTCAGGAATTGACTGACAGAAGGAGGACCTCATTTGGGCAGAATGGCTCCCAAAACCCAGTTGTGTCTCTGGGTGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000414877.1 ENST00000658887.1 |
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| CDS TCA 90 bp | CACACACAAAGGAGGCTTTTCAGAACCAAACACTGCATTAGGTGCTaGGCTAAAGTGAAGCCAGTGAAGATTTGCTCATTGTCCAGAGAT | + |
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Preference number: 5 (lower is better) Translates to: HTQRRLFRTKHCIRC*AKVKPVKICSLSRD Trigger: ATCTCTGGACAATGAGCAAATCTTCACTGGCTTCACTTTAGCTCAGCACCTAATGCAGTGTTTGGTTCTGAAAAGCCTCCTTTGTGTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000411605.5 |
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| CDS TCA 90 bp | GCCAAGCAAAAGTGGAAACTCCTTATAAAACCATCAGATCTTGTGTaGTTTATTCACTACCATGAGAACAGGATGAGGGAAACCACTCCC | + |
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Preference number: 5 (lower is better) Translates to: AKQKWKLLIKPSDLV*FIHYHENRMRETTP Trigger: GGGAGTGGTTTCCCTCATCCTGTTCTCATGGTAGTGAATAAATCACACAAGATCTGATGGTTTTATAAGGAGTTTCCACTTTTGCTTGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000658887.1 |
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| CDS GCA 90 bp | CTCACAGGGAAGATAGAATGTTTATATCATATCCTCAATGCCAACTaGCCATGCATGTCTGTAGCAGTTCTCCATGATACAATGAGCTCT | + |
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Preference number: 5 (lower is better) Translates to: LTGKIECLYHILNAN*PCMSVAVLHDTMSS Trigger: AGAGCTCATTGTATCATGGAGAACTGCTACAGACATGCATGGGCAGTTGGCATTGAGGATATGATATAAACATTCTATCTTCCCTGTGAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658887.1 |
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| CDS CCA 90 bp | CTCCCACATGTGAGAATTATGGGAGCTACAATTCAAGATGAGATTTaGTTGAAGACACAGCCAAACCATATCAGCCTATTTTTATCCCTG | + |
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Preference number: 5 (lower is better) Translates to: LPHVRIMGATIQDEI*LKTQPNHISLFLSL Trigger: CAGGGATAAAAATAGGCTGATATGGTTTGGCTGTGTCTTCAACCAAATCTCATCTTGAATTGTAGCTCCCATAATTCTCACATGTGGGAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000658887.1 |
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| CDS TCA 90 bp | CTAGTTGCTCCCACATGTGAGAATTATGGGAGCTACAATTCAAGATaGGATTTGGTTGAAGACACAGCCAAACCATATCAGCCTATTTTT | + |
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Preference number: 5 (lower is better) Translates to: LVAPTCENYGSYNSR*DLVEDTAKPYQPIF Trigger: AAAAATAGGCTGATATGGTTTGGCTGTGTCTTCAACCAAATCTCATCTTGAATTGTAGCTCCCATAATTCTCACATGTGGGAGCAACTAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658887.1 |
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| CDS GCA 90 bp | TCATCACTGTTATTTCAGCTATTAACAATCTTCACCAGATATGCTTaGTTTTCTAAGTCCCTTCCTCCCCATTATGCTATTGGTGGCTGT | + |
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Preference number: 5 (lower is better) Translates to: SSLLFQLLTIFTRYA*FSKSLPPHYAIGGC Trigger: ACAGCCACCAATAGCATAATGGGGAGGAAGGGACTTAGAAAAGCAAGCATATCTGGTGAAGATTGTTAATAGCTGAAATAACAGTGATGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000658887.1 |
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| CDS TCA 72 bp | AGTTCCGCACATCACACCATAGAACTGACACAGCGATaGCACACTGCCTGCTGCTGGGCTTACACACCCAGA | + |
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Preference number: 6 (lower is better) Translates to: SSAHHTIELTQR*HTACCWAYTPR Trigger: TCTGGGTGTGTAAGCCCAGCAGCAGGCAGTGTGTCATCGCTGTGTCAGTTCTATGGTGTGATGTGCGGAACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000411605.5 ENST00000414877.1 ENST00000658887.1 |
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| CDS CCA 72 bp | TGCTGGGCTTACACACCCAGAGACACAACTGGGTTTTaGGAGCCATTCTGCCCAAATGAGGTCCTCCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: CWAYTPRDTTGF*EPFCPNEVLLL Trigger: CAGAAGGAGGACCTCATTTGGGCAGAATGGCTCCCAAAACCCAGTTGTGTCTCTGGGTGTGTAAGCCCAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000414877.1 ENST00000658887.1 |
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| CDS GCA 72 bp | ACACCCAGAGACACAACTGGGTTTTGGGAGCCATTCTaGCCAAATGAGGTCCTCCTTCTGTCAGTCAATTCC | + |
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Preference number: 6 (lower is better) Translates to: TPRDTTGFWEPF*PNEVLLLSVNS Trigger: GGAATTGACTGACAGAAGGAGGACCTCATTTGGGCAGAATGGCTCCCAAAACCCAGTTGTGTCTCTGGGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000414877.1 ENST00000658887.1 |
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| CDS TCA 72 bp | TATCTTTGGCCTTTGGGAGAGCCGAAGAACCAGCCTTaGTGTCTACATTCCAGTACCAGTTCCGCACATCAC | + |
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Preference number: 6 (lower is better) Translates to: YLWPLGEPKNQP*CLHSSTSSAHH Trigger: GTGATGTGCGGAACTGGTACTGGAATGTAGACATCAAGGCTGGTTCTTCGGCTCTCCCAAAGGCCAAAGATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000411605.5 ENST00000414877.1 ENST00000658887.1 |
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| CDS CCA 72 bp | CACAATCATGGCAGAAGGAGAAAGGCACGTCTTCCATaGCAGCAGACTACAGAGAACGAGAGCCAAGCAAAA | + |
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Preference number: 6 (lower is better) Translates to: HNHGRRRKARLP*QQTTENESQAK Trigger: TTTTGCTTGGCTCTCGTTCTCTGTAGTCTGCTGCCATGGAAGACGTGCCTTTCTCCTTCTGCCATGATTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658887.1 |
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| CDS CCA 72 bp | TGGCATTTCCATATGATATCAGTAGTTCCACGTGGCTaGGGAGGCCTCACAATCATGGCAGAAGGAGAAAGG | + |
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Preference number: 6 (lower is better) Translates to: WHFHMISVVPRG*GGLTIMAEGER Trigger: CCTTTCTCCTTCTGCCATGATTGTGAGGCCTCCCCAGCCACGTGGAACTACTGATATCATATGGAAATGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658887.1 |
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| CDS CAA 72 bp | CTGCTGGGCTTACACACCCAGAGACACAACTGGGTTTaGGGAGCCATTTTTCTTGTCGGGAGATTTCAGAAC | + |
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Preference number: 6 (lower is better) Translates to: LLGLHTQRHNWV*GAIFLVGRFQN Trigger: GTTCTGAAATCTCCCGACAAGAAAAATGGCTCCCAAAACCCAGTTGTGTCTCTGGGTGTGTAAGCCCAGCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000411605.5 |
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| CDS CCA 72 bp | TGCTGGGCTTACACACCCAGAGACACAACTGGGTTTTaGGAGCCATTTTTCTTGTCGGGAGATTTCAGAACA | + |
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Preference number: 6 (lower is better) Translates to: CWAYTPRDTTGF*EPFFLSGDFRT Trigger: TGTTCTGAAATCTCCCGACAAGAAAAATGGCTCCCAAAACCCAGTTGTGTCTCTGGGTGTGTAAGCCCAGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000411605.5 |
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| CDS CAA 72 bp | ATATCTTTGGCCTTTGGGAGAGCCGAAGAACCAGCCTaGATGTCTACATTCCAGTACCAGTTCCGCACATCA | + |
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Preference number: 6 (lower is better) Translates to: ISLAFGRAEEPA*MSTFQYQFRTS Trigger: TGATGTGCGGAACTGGTACTGGAATGTAGACATCAAGGCTGGTTCTTCGGCTCTCCCAAAGGCCAAAGATAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000411605.5 ENST00000414877.1 ENST00000658887.1 |
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| CDS TCA 72 bp | AGGAGGCTTTTCAGAACCAAACACTGCATTAGGTGCTaGGCTAAAGTGAAGCCAGTGAAGATTTGCTCATTG | + |
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Preference number: 6 (lower is better) Translates to: RRLFRTKHCIRC*AKVKPVKICSL Trigger: CAATGAGCAAATCTTCACTGGCTTCACTTTAGCTCAGCACCTAATGCAGTGTTTGGTTCTGAAAAGCCTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000411605.5 |
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| CDS CAA 90 bp | TCGGTCTCTGACAAGCATGAAAGTTCGACTCGAACTAACCTCTTCTaGGTAACTTTATTCTTTACCTGTCTTCTCCGCATGACCAGAGAT | + |
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Preference number: 6 (lower is better) Translates to: SVSDKHESSTRTNLF*VTLFFTCLLRMTRD Trigger: ATCTCTGGTCATGCGGAGAAGACAGGTAAAGAATAAAGTTACCAAGAAGAGGTTAGTTCGAGTCGAACTTTCATGCTTGTCAGAGACCGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658887.1 |
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| CDS CAA 90 bp | TCTCTTCTGCAAATTGGAGACAATGATGCTTCCTGTCTACTAGGGTaGTTATTCTCGGTCTCTGACAAGCATGAAAGTTCGACTCGAACT | + |
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Preference number: 6 (lower is better) Translates to: SLLQIGDNDASCLLG*LFSVSDKHESSTRT Trigger: AGTTCGAGTCGAACTTTCATGCTTGTCAGAGACCGAGAATAACAACCCTAGTAGACAGGAAGCATCATTGTCTCCAATTTGCAGAAGAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658887.1 |
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| CDS TCA 72 bp | CATGAGCAGATTTACATGTCTTCAGTTTTATGGTACTaGATTCTAGGAGGGCTCATTCCAGACACAGAGCTG | + |
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Preference number: 6 (lower is better) Translates to: HEQIYMSSVLWY*ILGGLIPDTEL Trigger: CAGCTCTGTGTCTGGAATGAGCCCTCCTAGAATTCAGTACCATAAAACTGAAGACATGTAAATCTGCTCATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414877.1 |
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| CDS GCA 72 bp | CACAGGGAAGATAGAATGTTTATATCATATCCTCAATaGCAACTGCCCATGCATGTCTGTAGCAGTTCTCCA | + |
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Preference number: 6 (lower is better) Translates to: HREDRMFISYPQ*QLPMHVCSSSP Trigger: TGGAGAACTGCTACAGACATGCATGGGCAGTTGGCATTGAGGATATGATATAAACATTCTATCTTCCCTGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658887.1 |
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| CDS CCA 72 bp | AGTCCGGATAAATGCTCCACACAAAAGGCTATGCAGTaGAGGATTTACATGAGCAGATTTACATGTCTTCAG | + |
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Preference number: 6 (lower is better) Translates to: SPDKCSTQKAMQ*RIYMSRFTCLQ Trigger: CTGAAGACATGTAAATCTGCTCATGTAAATCCTCCACTGCATAGCCTTTTGTGTGGAGCATTTATCCGGACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414877.1 |
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| CDS CAA 72 bp | CAAATTGGAGACAATGATGCTTCCTGTCTACTAGGGTaGTTATTCTCGGTCTCTGACAAGCATGAAAGTTCG | + |
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Preference number: 6 (lower is better) Translates to: QIGDNDASCLLG*LFSVSDKHESS Trigger: CGAACTTTCATGCTTGTCAGAGACCGAGAATAACAACCCTAGTAGACAGGAAGCATCATTGTCTCCAATTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658887.1 |
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| CDS TCA 72 bp | GCTCCACACAAAAGGCTATGCAGTGGAGGATTTACATaGGCAGATTTACATGTCTTCAGTTTTATGGTACTG | + |
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Preference number: 6 (lower is better) Translates to: APHKRLCSGGFT*ADLHVFSFMVL Trigger: CAGTACCATAAAACTGAAGACATGTAAATCTGCTCATGTAAATCCTCCACTGCATAGCCTTTTGTGTGGAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000414877.1 |
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| CDS TCA 72 bp | CCCACATGTGAGAATTATGGGAGCTACAATTCAAGATaGGATTTGGTTGAAGACACAGCCAAACCATATCAG | + |
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Preference number: 6 (lower is better) Translates to: PTCENYGSYNSR*DLVEDTAKPYQ Trigger: CTGATATGGTTTGGCTGTGTCTTCAACCAAATCTCATCTTGAATTGTAGCTCCCATAATTCTCACATGTGGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658887.1 |
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| CDS CAA 72 bp | GACAAGCATGAAAGTTCGACTCGAACTAACCTCTTCTaGGTAACTTTATTCTTTACCTGTCTTCTCCGCATG | + |
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Preference number: 6 (lower is better) Translates to: DKHESSTRTNLF*VTLFFTCLLRM Trigger: CATGCGGAGAAGACAGGTAAAGAATAAAGTTACCAAGAAGAGGTTAGTTCGAGTCGAACTTTCATGCTTGTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658887.1 |
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| CDS CAA 90 bp | CCACATGTGAGAATTATGGGAGCTACAATTCAAGATGAGATTTGGTaGAAGACACAGCCAAACCATATCAGCCTATTTTTATCCCTGGTC | + |
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Preference number: 6 (lower is better) Translates to: PHVRIMGATIQDEIW*KTQPNHISLFLSLV Trigger: GACCAGGGATAAAAATAGGCTGATATGGTTTGGCTGTGTCTTCAACCAAATCTCATCTTGAATTGTAGCTCCCATAATTCTCACATGTGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000658887.1 |
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| CDS TCA 72 bp | AAAACCATCAGATCTTGTGTGATTTATTCACTACCATaGGAACAGGATGAGGGAAACCACTCCCATGATTCA | + |
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Preference number: 6 (lower is better) Translates to: KTIRSCVIYSLP*EQDEGNHSHDS Trigger: TGAATCATGGGAGTGGTTTCCCTCATCCTGTTCTCATGGTAGTGAATAAATCACACAAGATCTGATGGTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658887.1 |
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| CDS GCA 72 bp | AAGATAGAATGTTTATATCATATCCTCAATGCCAACTaGCCATGCATGTCTGTAGCAGTTCTCCATGATACA | + |
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Preference number: 6 (lower is better) Translates to: KIECLYHILNAN*PCMSVAVLHDT Trigger: TGTATCATGGAGAACTGCTACAGACATGCATGGGCAGTTGGCATTGAGGATATGATATAAACATTCTATCTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658887.1 |
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| CDS CCA 72 bp | GTGAGAATTATGGGAGCTACAATTCAAGATGAGATTTaGTTGAAGACACAGCCAAACCATATCAGCCTATTT | + |
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Preference number: 6 (lower is better) Translates to: VRIMGATIQDEI*LKTQPNHISLF Trigger: AAATAGGCTGATATGGTTTGGCTGTGTCTTCAACCAAATCTCATCTTGAATTGTAGCTCCCATAATTCTCAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658887.1 |
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| CDS TCA 72 bp | ATGATTCAATTATCTCCACCTAGTTGCTCCCACATGTaGGAATTATGGGAGCTACAATTCAAGATGAGATTT | + |
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Preference number: 6 (lower is better) Translates to: MIQLSPPSCSHM*ELWELQFKMRF Trigger: AAATCTCATCTTGAATTGTAGCTCCCATAATTCTCACATGTGGGAGCAACTAGGTGGAGATAATTGAATCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658887.1 |
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| CDS TCA 72 bp | GAATTATGGGAGCTACAATTCAAGATGAGATTTGGTTaGAGACACAGCCAAACCATATCAGCCTATTTTTAT | + |
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Preference number: 6 (lower is better) Translates to: ELWELQFKMRFG*RHSQTISAYFY Trigger: ATAAAAATAGGCTGATATGGTTTGGCTGTGTCTTCAACCAAATCTCATCTTGAATTGTAGCTCCCATAATTC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000658887.1 |
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| CDS GCA 72 bp | TTATTTCAGCTATTAACAATCTTCACCAGATATGCTTaGTTTTCTAAGTCCCTTCCTCCCCATTATGCTATT | + |
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Preference number: 6 (lower is better) Translates to: LFQLLTIFTRYA*FSKSLPPHYAI Trigger: AATAGCATAATGGGGAGGAAGGGACTTAGAAAAGCAAGCATATCTGGTGAAGATTGTTAATAGCTGAAATAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000658887.1 |
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