Pregenerated sensors for LINC00114 (Homo sapiens)
Ensembl gene IDs: ENSG00000223806Ensembl transcript IDs: ENST00000411989.5, ENST00000429621.1, ENST00000448579.5, ENST00000663481.1
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CGGGTGTTTTTCCTCCTCAGCAACGGGCACAGGTCGTTCCAGTTTTaGCCAGGCGGTGGCGCTCGAGGCAAACGGTGTCATGAAACGGTC | + |
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Preference number: 5 (lower is better) Translates to: RVFFLLSNGHRSFQF*PGGGARGKRCHETV Trigger: GACCGTTTCATGACACCGTTTGCCTCGAGCGCCACCGCCTGGCCAAAACTGGAACGACCTGTGCCCGTTGCTGAGGAGGAAAAACACCCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000663481.1 |
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| CDS CCA 90 bp | CAGAGAGTGGACTTGACACCCATCAGAAACATTCCCGGAGTGCGTTaGTGTGAAGGTGCGAGGAGAGTCGGGGAAGCATCCCGAAGCCCT | + |
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Preference number: 5 (lower is better) Translates to: QRVDLTPIRNIPGVR*CEGARRVGEASRSP Trigger: AGGGCTTCGGGATGCTTCCCCGACTCTCCTCGCACCTTCACACCAACGCACTCCGGGAATGTTTCTGATGGGTGTCAAGTCCACTCTCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663481.1 |
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| CDS GCA 90 bp | GTTCTTAGGAGATGCGCCTGGGCCCCAAGAAGCACAATGATGATGTaGTCCTGGGCCTGGAATCTCAAGGCTCAAGGAGCTCCATGGTCC | + |
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Preference number: 5 (lower is better) Translates to: VLRRCAWAPRSTMMM*SWAWNLKAQGAPWS Trigger: GGACCATGGAGCTCCTTGAGCCTTGAGATTCCAGGCCCAGGAGCACATCATCATTGTGCTTCTTGGGGCCCAGGCGCATCTCCTAAGAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000411989.5 ENST00000429621.1 ENST00000448579.5 ENST00000663481.1 |
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| CDS GCA 90 bp | GGCAGTGGGGCCTGCGTCTCCAATGGGGACACAGTAGAGCTGAACTaGCATCCAGGAGGTGACTCTCAATCAGGAAACAGGAAACAAGAG | + |
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Preference number: 5 (lower is better) Translates to: GSGACVSNGDTVELN*HPGGDSQSGNRKQE Trigger: CTCTTGTTTCCTGTTTCCTGATTGAGAGTCACCTCCTGGATGGCAGTTCAGCTCTACTGTGTCCCCATTGGAGACGCAGGCCCCACTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000411989.5 ENST00000663481.1 |
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| CDS GCA 90 bp | AGTAGGTCTCTTGACTATAGGACTTCTCAGACCTTAATCGGCAACTaGAGGGCAGGAGTCTCTGGATCATCATGGCAGCTATGTTGGTCC | + |
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Preference number: 5 (lower is better) Translates to: SRSLDYRTSQTLIGN*RAGVSGSSWQLCWS Trigger: GGACCAACATAGCTGCCATGATGATCCAGAGACTCCTGCCCTGCAGTTGCCGATTAAGGTCTGAGAAGTCCTATAGTCAAGAGACCTACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000411989.5 |
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| CDS CCA 90 bp | ATTCATGGATCCAACAAATATTTCAGAGCCTATTTCTTGTGTGGTTaGCAGTGGGGCCTGCGTCTCCAATGGGGACACAGTAGAGCTGAA | + |
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Preference number: 5 (lower is better) Translates to: IHGSNKYFRAYFLCG*QWGLRLQWGHSRAE Trigger: TTCAGCTCTACTGTGTCCCCATTGGAGACGCAGGCCCCACTGCCAACCACACAAGAAATAGGCTCTGAAATATTTGTTGGATCCATGAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000411989.5 ENST00000663481.1 |
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| CDS GCA 90 bp | TACAGGGTCAGCACAAAGCAGAATACAGGACCCGAAAATAACAGCTaGACCGGAAGAATACTTGACCACTGTTTAAGAAGGAATTTGACG | + |
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Preference number: 5 (lower is better) Translates to: YRVSTKQNTGPENNS*TGRILDHCLRRNLT Trigger: CGTCAAATTCCTTCTTAAACAGTGGTCAAGTATTCTTCCGGTGCAGCTGTTATTTTCGGGTCCTGTATTCTGCTTTGTGCTGACCCTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663481.1 |
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| CDS GCA 90 bp | GCTACTTCTCATATCATTCGCTTGCATGTCGCTGACTCTCAAGCATaGTCCTGGTCATATCTGGGACTTGTTCTTCAAGTCTTATCTTTT | + |
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Preference number: 5 (lower is better) Translates to: ATSHIIRLHVADSQA*SWSYLGLVLQVLSF Trigger: AAAAGATAAGACTTGAAGAACAAGTCCCAGATATGACCAGGAGCATGCTTGAGAGTCAGCGACATGCAAGCGAATGATATGAGAAGTAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000411989.5 |
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| CDS CCA 90 bp | TCTCATATCATTCGCTTGCATGTCGCTGACTCTCAAGCATGCTCCTaGTCATATCTGGGACTTGTTCTTCAAGTCTTATCTTTTATTGTA | + |
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Preference number: 5 (lower is better) Translates to: SHIIRLHVADSQACS*SYLGLVLQVLSFIV Trigger: TACAATAAAAGATAAGACTTGAAGAACAAGTCCCAGATATGACCAGGAGCATGCTTGAGAGTCAGCGACATGCAAGCGAATGATATGAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000411989.5 |
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| CDS CCA 72 bp | TTCCTCCTCAGCAACGGGCACAGGTCGTTCCAGTTTTaGCCAGGCGGTGGCGCTCGAGGCAAACGGTGTCAT | + |
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Preference number: 6 (lower is better) Translates to: FLLSNGHRSFQF*PGGGARGKRCH Trigger: ATGACACCGTTTGCCTCGAGCGCCACCGCCTGGCCAAAACTGGAACGACCTGTGCCCGTTGCTGAGGAGGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663481.1 |
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| CDS CAA 72 bp | TTTCCTCCTCAGCAACGGGCACAGGTCGTTCCAGTTTaGGCCAGGCGGTGGCGCTCGAGGCAAACGGTGTCA | + |
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Preference number: 6 (lower is better) Translates to: FPPQQRAQVVPV*ARRWRSRQTVS Trigger: TGACACCGTTTGCCTCGAGCGCCACCGCCTGGCCAAAACTGGAACGACCTGTGCCCGTTGCTGAGGAGGAAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663481.1 |
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| CDS TCA 72 bp | GACACCCATCAGAAACATTCCCGGAGTGCGTTGGTGTaGAGGTGCGAGGAGAGTCGGGGAAGCATCCCGAAG | + |
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Preference number: 6 (lower is better) Translates to: DTHQKHSRSALV*RCEESRGSIPK Trigger: CTTCGGGATGCTTCCCCGACTCTCCTCGCACCTTCACACCAACGCACTCCGGGAATGTTTCTGATGGGTGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663481.1 |
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| CDS CCA 72 bp | GCCTGGGCCCCAAGAAGCACAATGATGATGTGCTCCTaGGCCTGGAATCTCAAGGCTCAAGGAGCTCCATGG | + |
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Preference number: 6 (lower is better) Translates to: AWAPRSTMMMCS*AWNLKAQGAPW Trigger: CCATGGAGCTCCTTGAGCCTTGAGATTCCAGGCCCAGGAGCACATCATCATTGTGCTTCTTGGGGCCCAGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000411989.5 ENST00000429621.1 ENST00000448579.5 ENST00000663481.1 |
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| CDS CCA 72 bp | GAGTCGGGGAAGCATCCCGAAGCCCTGCTAGGCGAATaGGTACTGCTGAGATTACAGGGTCAGCACAAAGCA | + |
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Preference number: 6 (lower is better) Translates to: ESGKHPEALLGE*VLLRLQGQHKA Trigger: TGCTTTGTGCTGACCCTGTAATCTCAGCAGTACCCATTCGCCTAGCAGGGCTTCGGGATGCTTCCCCGACTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663481.1 |
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| CDS CCA 72 bp | GACTTGACACCCATCAGAAACATTCCCGGAGTGCGTTaGTGTGAAGGTGCGAGGAGAGTCGGGGAAGCATCC | + |
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Preference number: 6 (lower is better) Translates to: DLTPIRNIPGVR*CEGARRVGEAS Trigger: GGATGCTTCCCCGACTCTCCTCGCACCTTCACACCAACGCACTCCGGGAATGTTTCTGATGGGTGTCAAGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663481.1 |
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| CDS GCA 72 bp | GCCTGCGTCTCCAATGGGGACACAGTAGAGCTGAACTaGCATCCAGGAGGTGACTCTCAATCAGGAAACAGG | + |
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Preference number: 6 (lower is better) Translates to: ACVSNGDTVELN*HPGGDSQSGNR Trigger: CCTGTTTCCTGATTGAGAGTCACCTCCTGGATGGCAGTTCAGCTCTACTGTGTCCCCATTGGAGACGCAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000411989.5 ENST00000663481.1 |
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| CDS GCA 72 bp | TCAGAGCCTATTTCTTGTGTGGTTGGCAGTGGGGCCTaGGTCTCCAATGGGGACACAGTAGAGCTGAACTGC | + |
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Preference number: 6 (lower is better) Translates to: SEPISCVVGSGA*VSNGDTVELNC Trigger: GCAGTTCAGCTCTACTGTGTCCCCATTGGAGACGCAGGCCCCACTGCCAACCACACAAGAAATAGGCTCTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000411989.5 ENST00000663481.1 |
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| CDS CAA 90 bp | GAAGGGGCATTAAGTAAGAGATCTGAGGGGTTGAGGAAACCAACATaGCAGGTGAGGGTACAGGCCAAGGACTCAGGGAGCCTGGTGATC | + |
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Preference number: 6 (lower is better) Translates to: EGALSKRSEGLRKPT*QVRVQAKDSGSLVI Trigger: GATCACCAGGCTCCCTGAGTCCTTGGCCTGTACCCTCACCTGCAATGTTGGTTTCCTCAACCCCTCAGATCTCTTACTTAATGCCCCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000411989.5 ENST00000663481.1 |
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| CDS CAA 90 bp | AACAGCTGCACCGGAAGAATACTTGACCACTGTTTAAGAAGGAATTaGACGAAGAGCAGTCACCGAGTGCAGCCCTGGGCCGGCAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: NSCTGRILDHCLRRN*TKSSHRVQPWAGRK Trigger: CTTCCTGCCGGCCCAGGGCTGCACTCGGTGACTGCTCTTCGTCAAATTCCTTCTTAAACAGTGGTCAAGTATTCTTCCGGTGCAGCTGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663481.1 |
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| CDS TCA 72 bp | GCCTCAGATGCTGGGCAGCAAATGTGGGTTTTATCCTaGGTACAAAGAGCAGTCATCTGCCAAGGAGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: ASDAGQQMWVLS*VQRAVICQGAQ Trigger: CTGGGCTCCTTGGCAGATGACTGCTCTTTGTACTCAGGATAAAACCCACATTTGCTGCCCAGCATCTGAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000411989.5 ENST00000663481.1 |
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| CDS GCA 72 bp | GTACAAAGAGCAGTCATCTGCCAAGGAGCCCAGTGCTaGTTCCACTGCAAATATCTAGGTTCCAAGAGCCCC | + |
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Preference number: 6 (lower is better) Translates to: VQRAVICQGAQC*FHCKYLGSKSP Trigger: GGGGCTCTTGGAACCTAGATATTTGCAGTGGAAGCAGCACTGGGCTCCTTGGCAGATGACTGCTCTTTGTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000411989.5 ENST00000663481.1 |
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| CDS CAA 72 bp | CTCTCAAAGCACGAGTCCGTTCATCAGAGAGTGGACTaGACACCCATCAGAAACATTCCCGGAGTGCGTTGG | + |
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Preference number: 6 (lower is better) Translates to: LSKHESVHQRVD*TPIRNIPGVRW Trigger: CCAACGCACTCCGGGAATGTTTCTGATGGGTGTCAAGTCCACTCTCTGATGAACGGACTCGTGCTTTGAGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663481.1 |
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| CDS CAA 90 bp | CTGAAGATGCTCTCAAAGCACGAGTCCGTTCATCAGAGAGTGGACTaGACACCCATCAGAAACATTCCCGGAGTGCGTTGGTGTGAAGGT | + |
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Preference number: 6 (lower is better) Translates to: LKMLSKHESVHQRVD*TPIRNIPGVRWCEG Trigger: ACCTTCACACCAACGCACTCCGGGAATGTTTCTGATGGGTGTCAAGTCCACTCTCTGATGAACGGACTCGTGCTTTGAGAGCATCTTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663481.1 |
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| CDS TCA 72 bp | TCTCAAAGCACGAGTCCGTTCATCAGAGAGTGGACTTaGCACCCATCAGAAACATTCCCGGAGTGCGTTGGT | + |
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Preference number: 6 (lower is better) Translates to: SQSTSPFIREWT*HPSETFPECVG Trigger: ACCAACGCACTCCGGGAATGTTTCTGATGGGTGTCAAGTCCACTCTCTGATGAACGGACTCGTGCTTTGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663481.1 |
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| CDS CAA 72 bp | TTAAGTAAGAGATCTGAGGGGTTGAGGAAACCAACATaGCAGGTGAGGGTACAGGCCAAGGACTCAGGGAGC | + |
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Preference number: 6 (lower is better) Translates to: LSKRSEGLRKPT*QVRVQAKDSGS Trigger: GCTCCCTGAGTCCTTGGCCTGTACCCTCACCTGCAATGTTGGTTTCCTCAACCCCTCAGATCTCTTACTTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000411989.5 ENST00000663481.1 |
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| CDS CAA 72 bp | ACCGGAAGAATACTTGACCACTGTTTAAGAAGGAATTaGACGAAGAGCAGTCACCGAGTGCAGCCCTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: TGRILDHCLRRN*TKSSHRVQPWA Trigger: GGCCCAGGGCTGCACTCGGTGACTGCTCTTCGTCAAATTCCTTCTTAAACAGTGGTCAAGTATTCTTCCGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663481.1 |
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| CDS GCA 72 bp | CTTGACTATAGGACTTCTCAGACCTTAATCGGCAACTaGAGGGCAGGAGTCTCTGGATCATCATGGCAGCTA | + |
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Preference number: 6 (lower is better) Translates to: LDYRTSQTLIGN*RAGVSGSSWQL Trigger: TAGCTGCCATGATGATCCAGAGACTCCTGCCCTGCAGTTGCCGATTAAGGTCTGAGAAGTCCTATAGTCAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000411989.5 |
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| CDS CCA 72 bp | AAATATTTCAGAGCCTATTTCTTGTGTGGTTGGCAGTaGGGCCTGCGTCTCCAATGGGGACACAGTAGAGCT | + |
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Preference number: 6 (lower is better) Translates to: KYFRAYFLCGWQ*GLRLQWGHSRA Trigger: AGCTCTACTGTGTCCCCATTGGAGACGCAGGCCCCACTGCCAACCACACAAGAAATAGGCTCTGAAATATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000411989.5 ENST00000663481.1 |
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| CDS GCA 72 bp | AGATCCACCCTCAAGCTACTTCTCATATCATTCGCTTaGATGTCGCTGACTCTCAAGCATGCTCCTGGTCAT | + |
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Preference number: 6 (lower is better) Translates to: RSTLKLLLISFA*MSLTLKHAPGH Trigger: ATGACCAGGAGCATGCTTGAGAGTCAGCGACATGCAAGCGAATGATATGAGAAGTAGCTTGAGGGTGGATCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000411989.5 |
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| CDS CAA 72 bp | AAGATCCACCCTCAAGCTACTTCTCATATCATTCGCTaGCATGTCGCTGACTCTCAAGCATGCTCCTGGTCA | + |
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Preference number: 6 (lower is better) Translates to: KIHPQATSHIIR*HVADSQACSWS Trigger: TGACCAGGAGCATGCTTGAGAGTCAGCGACATGCAAGCGAATGATATGAGAAGTAGCTTGAGGGTGGATCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000411989.5 |
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| CDS TCA 72 bp | TCAAGCTACTTCTCATATCATTCGCTTGCATGTCGCTaGCTCTCAAGCATGCTCCTGGTCATATCTGGGACT | + |
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Preference number: 6 (lower is better) Translates to: SSYFSYHSLACR*LSSMLLVISGT Trigger: AGTCCCAGATATGACCAGGAGCATGCTTGAGAGTCAGCGACATGCAAGCGAATGATATGAGAAGTAGCTTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000411989.5 |
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| CDS GCA 72 bp | CATATCATTCGCTTGCATGTCGCTGACTCTCAAGCATaGTCCTGGTCATATCTGGGACTTGTTCTTCAAGTC | + |
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Preference number: 6 (lower is better) Translates to: HIIRLHVADSQA*SWSYLGLVLQV Trigger: GACTTGAAGAACAAGTCCCAGATATGACCAGGAGCATGCTTGAGAGTCAGCGACATGCAAGCGAATGATATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000411989.5 |
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| CDS GCA 72 bp | TCCCTTCTCTCTGCAGCCGGTCTGCACACGATGATCTaGCCAGGAAACTGTAGGTATATTGTAAACTATTAC | + |
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Preference number: 6 (lower is better) Translates to: SLLSAAGLHTMI*PGNCRYIVNYY Trigger: GTAATAGTTTACAATATACCTACAGTTTCCTGGGCAGATCATCGTGTGCAGACCGGCTGCAGAGAGAAGGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000411989.5 ENST00000429621.1 ENST00000448579.5 ENST00000663481.1 |
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| CDS CAA 72 bp | ATTCATGGATCCAACAAATATTTCAGAGCCTATTTCTaGTGTGGTTGGCAGTGGGGCCTGCGTCTCCAATGG | + |
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Preference number: 6 (lower is better) Translates to: IHGSNKYFRAYF*CGWQWGLRLQW Trigger: CCATTGGAGACGCAGGCCCCACTGCCAACCACACAAGAAATAGGCTCTGAAATATTTGTTGGATCCATGAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000411989.5 ENST00000663481.1 |
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| CDS CCA 72 bp | ATTCGCTTGCATGTCGCTGACTCTCAAGCATGCTCCTaGTCATATCTGGGACTTGTTCTTCAAGTCTTATCT | + |
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Preference number: 6 (lower is better) Translates to: IRLHVADSQACS*SYLGLVLQVLS Trigger: AGATAAGACTTGAAGAACAAGTCCCAGATATGACCAGGAGCATGCTTGAGAGTCAGCGACATGCAAGCGAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000411989.5 |
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| CDS GCA 72 bp | AGCACAAAGCAGAATACAGGACCCGAAAATAACAGCTaGACCGGAAGAATACTTGACCACTGTTTAAGAAGG | + |
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Preference number: 6 (lower is better) Translates to: STKQNTGPENNS*TGRILDHCLRR Trigger: CCTTCTTAAACAGTGGTCAAGTATTCTTCCGGTGCAGCTGTTATTTTCGGGTCCTGTATTCTGCTTTGTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663481.1 |
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| CDS CAA 90 bp | GGACTTGTTCTTCAAGTCTTATCTTTTATTGTAGCACAAAACCTTTaGGCCTCCGTTATGCAAATTCGAGATACCAGTCATTTGAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: GLVLQVLSFIVAQNL*ASVMQIRDTSHLRK Trigger: CTTCCTCAAATGACTGGTATCTCGAATTTGCATAACGGAGGCCAAAAGGTTTTGTGCTACAATAAAAGATAAGACTTGAAGAACAAGTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000411989.5 |
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