Pregenerated sensors for LINC00113 (Homo sapiens)
Ensembl gene IDs: ENSG00000225298Ensembl transcript IDs: ENST00000411460.5, ENST00000425376.5, ENST00000442550.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TCCAATCCTAAACCAGTTATCCTAAGGTGGGTAAAATATATGAATTaGCTTAGCGATCACTCGGATTCCATCCCTGGAACTTACAAGCTC | + |
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Preference number: 5 (lower is better) Translates to: SNPKPVILRWVKYMN*LSDHSDSIPGTYKL Trigger: GAGCTTGTAAGTTCCAGGGATGGAATCCGAGTGATCGCTAAGGCAATTCATATATTTTACCCACCTTAGGATAACTGGTTTAGGATTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000442550.1 |
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| CDS GCA 90 bp | TCCAATCCTAAACCAGTTATCCTAAGGTGGGTAAAATATATGAATTaGCTTAGCGATCACTCGGATTCCATCCCTGGAACTTCATCCATT | + |
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Preference number: 5 (lower is better) Translates to: SNPKPVILRWVKYMN*LSDHSDSIPGTSSI Trigger: AATGGATGAAGTTCCAGGGATGGAATCCGAGTGATCGCTAAGGCAATTCATATATTTTACCCACCTTAGGATAACTGGTTTAGGATTGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000411460.5 ENST00000425376.5 |
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| CDS CCA 90 bp | GAGTCCTTTCCCCATTGCTTTTTGTCAGGTTTGTCGAAGATTGGATaGTTGAAGATGAGTGATCTAATTTCTGGGTTCTCTATTCTGTTC | + |
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Preference number: 5 (lower is better) Translates to: ESFPHCFLSGLSKIG*LKMSDLISGFSILF Trigger: GAACAGAATAGAGAACCCAGAAATTAGATCACTCATCTTCAACCATCCAATCTTCGACAAACCTGACAAAAAGCAATGGGGAAAGGACTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000411460.5 ENST00000425376.5 ENST00000442550.1 |
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| CDS GCA 90 bp | TATCCAGCACCTACTTATTTGTATCTTCATTTTTGTGGCCACGAATaGATGCACATTAAATTGCTCCAGATATTTGATTTAATTCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: YPAPTYLYLHFCGHE*MHIKLLQIFDLILQ Trigger: CTGGAGAATTAAATCAAATATCTGGAGCAATTTAATGTGCATGCATTCGTGGCCACAAAAATGAAGATACAAATAAGTAGGTGCTGGATA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000425376.5 |
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| CDS CAA 90 bp | CCATTTCTCCCAGCACCATTTATTGAACAGGGAGTCCTTTCCCCATaGCTTTTTGTCAGGTTTGTCGAAGATTGGATGGTTGAAGATGAG | + |
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Preference number: 6 (lower is better) Translates to: PFLPAPFIEQGVLSP*LFVRFVEDWMVEDE Trigger: CTCATCTTCAACCATCCAATCTTCGACAAACCTGACAAAAAGCAATGGGGAAAGGACTCCCTGTTCAATAAATGGTGCTGGGAGAAATGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000411460.5 ENST00000425376.5 ENST00000442550.1 |
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| CDS CAA 72 bp | CCAGCACCATTTATTGAACAGGGAGTCCTTTCCCCATaGCTTTTTGTCAGGTTTGTCGAAGATTGGATGGTT | + |
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Preference number: 6 (lower is better) Translates to: PAPFIEQGVLSP*LFVRFVEDWMV Trigger: AACCATCCAATCTTCGACAAACCTGACAAAAAGCAATGGGGAAAGGACTCCCTGTTCAATAAATGGTGCTGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000411460.5 ENST00000425376.5 ENST00000442550.1 |
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| CDS CAA 90 bp | TCCCAGCACCATTTATTGAACAGGGAGTCCTTTCCCCATTGCTTTTaGTCAGGTTTGTCGAAGATTGGATGGTTGAAGATGAGTGATCTA | + |
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Preference number: 6 (lower is better) Translates to: SQHHLLNRESFPHCF*SGLSKIGWLKMSDL Trigger: TAGATCACTCATCTTCAACCATCCAATCTTCGACAAACCTGACAAAAAGCAATGGGGAAAGGACTCCCTGTTCAATAAATGGTGCTGGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000411460.5 ENST00000425376.5 ENST00000442550.1 |
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| CDS CAA 72 bp | AACAGGGAGTCCTTTCCCCATTGCTTTTTGTCAGGTTaGTCGAAGATTGGATGGTTGAAGATGAGTGATCTA | + |
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Preference number: 6 (lower is better) Translates to: NRESFPHCFLSG*SKIGWLKMSDL Trigger: TAGATCACTCATCTTCAACCATCCAATCTTCGACAAACCTGACAAAAAGCAATGGGGAAAGGACTCCCTGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000411460.5 ENST00000425376.5 ENST00000442550.1 |
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| CDS CAA 90 bp | TGCATGCACATTAAATTGCTCCAGATATTTGATTTAATTCTCCAGTaGGGTGGGTTGTGTGATTTAGTAGTGGCCATTGAGTGGCCAAGG | + |
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Preference number: 6 (lower is better) Translates to: CMHIKLLQIFDLILQ*GGLCDLVVAIEWPR Trigger: CCTTGGCCACTCAATGGCCACTACTAAATCACACAACCCACCCAACTGGAGAATTAAATCAAATATCTGGAGCAATTTAATGTGCATGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000411460.5 ENST00000425376.5 ENST00000442550.1 |
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| CDS CAA 90 bp | ATTAAATTGCTCCAGATATTTGATTTAATTCTCCAGTTGGGTGGGTaGTGTGATTTAGTAGTGGCCATTGAGTGGCCAAGGAATGGCTTG | + |
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Preference number: 6 (lower is better) Translates to: IKLLQIFDLILQLGG*CDLVVAIEWPRNGL Trigger: CAAGCCATTCCTTGGCCACTCAATGGCCACTACTAAATCACACAACCCACCCAACTGGAGAATTAAATCAAATATCTGGAGCAATTTAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000411460.5 ENST00000425376.5 ENST00000442550.1 |
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| CDS CAA 90 bp | CCACTGGTCTATGTGTCTGACGAAGGTCTAATATCCAGCACTTATTaGTATCTTCATTTTTGTGGCCACGAATGCATGCACATTAAATTG | + |
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Preference number: 6 (lower is better) Translates to: PLVYVSDEGLISSTY*YLHFCGHECMHIKL Trigger: CAATTTAATGTGCATGCATTCGTGGCCACAAAAATGAAGATACAAATAAGTGCTGGATATTAGACCTTCGTCAGACACATAGACCAGTGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000411460.5 ENST00000442550.1 |
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| CDS CAA 72 bp | ATTAAATTGCTCCAGATATTTGATTTAATTCTCCAGTaGGGTGGGTTGTGTGATTTAGTAGTGGCCATTGAG | + |
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Preference number: 6 (lower is better) Translates to: IKLLQIFDLILQ*GGLCDLVVAIE Trigger: CTCAATGGCCACTACTAAATCACACAACCCACCCAACTGGAGAATTAAATCAAATATCTGGAGCAATTTAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000411460.5 ENST00000425376.5 ENST00000442550.1 |
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