Pregenerated sensors for LINC00112 (Homo sapiens)
Ensembl gene IDs: ENSG00000232401Ensembl transcript IDs: ENST00000432830.2, ENST00000656530.1, ENST00000657727.1, ENST00000658211.1, ENST00000661908.1, ENST00000667584.1, ENST00000669012.1, ENST00000669036.1
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CAGTGTCAGCAGGGCCGGGTTCTTCTGGAGGCTCAGGGGAGAAGCTaGCTTCCTGTCTTTTCAGCTTCCAGAGGCCGCCTGCACGCCTCA | + |
|
Preference number: 5 (lower is better) Translates to: QCQQGRVLLEAQGRS*LPVFSASRGRLHAS Trigger: TGAGGCGTGCAGGCGGCCTCTGGAAGCTGAAAAGACAGGAAGGCAGCTTCTCCCCTGAGCCTCCAGAAGAACCCGGCCCTGCTGACACTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000669036.1 |
||
| CDS GCA 90 bp | GGGTCCCCGCAGCAGACCACATCACTCCAACCTTCGCTTCATCCTTaGATCTCCTCCTCCGCCTCCCTTCCTCCCTCTCATAAGGACCCT | + |
|
Preference number: 5 (lower is better) Translates to: GSPQQTTSLQPSLHP*ISSSASLPPSHKDP Trigger: AGGGTCCTTATGAGAGGGAGGAAGGGAGGCGGAGGAGGAGATGCAAGGATGAAGCGAAGGTTGGAGTGATGTGGTCTGCTGCGGGGACCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669036.1 |
||
| CDS CCA 90 bp | ATGGTCAGAGTAGGGAGCCTCGAGGGTCCCGTCCAGGTCTACAGGTaGATAACCTGTGCGCAGAGGCCACACTGTGAGAGAAGACCTGGT | + |
|
Preference number: 5 (lower is better) Translates to: MVRVGSLEGPVQVYR*ITCAQRPHCERRPG Trigger: ACCAGGTCTTCTCTCACAGTGTGGCCTCTGCGCACAGGTTATCCACCTGTAGACCTGGACGGGACCCTCGAGGCTCCCTACTCTGACCAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000432830.2 ENST00000656530.1 ENST00000657727.1 ENST00000658211.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 ENST00000669036.1 |
||
| CDS TCA 90 bp | CGTCCAGGTCTACAGGTGGATAACCTGTGCGCAGAGGCCACACTGTaGGAGAAGACCTGGTGGAGGATGTTTCCCGTGTCACAGCCAGGA | + |
|
Preference number: 5 (lower is better) Translates to: RPGLQVDNLCAEATL*EKTWWRMFPVSQPG Trigger: TCCTGGCTGTGACACGGGAAACATCCTCCACCAGGTCTTCTCTCACAGTGTGGCCTCTGCGCACAGGTTATCCACCTGTAGACCTGGACG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000656530.1 ENST00000658211.1 ENST00000667584.1 |
||
| CDS CCA 90 bp | CCAGTGTTGTTGTCGTGGGCACCTAAGTTGTGGGCACTGGAGGGATaGAGGCCTTTAGGCTGCACCAAGTTACCTGCCTCGGCTTCTGGT | + |
|
Preference number: 5 (lower is better) Translates to: PVLLSWAPKLWALEG*RPLGCTKLPASASG Trigger: ACCAGAAGCCGAGGCAGGTAACTTGGTGCAGCCTAAAGGCCTCCATCCCTCCAGTGCCCACAACTTAGGTGCCCACGACAACAACACTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000656530.1 ENST00000657727.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 ENST00000669036.1 |
||
| CDS TCA 90 bp | CGTCCAGGTCTACAGGTGGATAACCTGTGCGCAGAGGCCACACTGTaGGAGAAGACCTGGTGGAGGATGTTTCCCGTGTCACAGCTGCAA | + |
|
Preference number: 5 (lower is better) Translates to: RPGLQVDNLCAEATL*EKTWWRMFPVSQLQ Trigger: TTGCAGCTGTGACACGGGAAACATCCTCCACCAGGTCTTCTCTCACAGTGTGGCCTCTGCGCACAGGTTATCCACCTGTAGACCTGGACG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000432830.2 ENST00000657727.1 ENST00000661908.1 ENST00000669012.1 ENST00000669036.1 |
||
| CDS CCA 90 bp | GAATCACATCTGCAGGATCTCTGCGGAAGCTCTGGGGATAAGATTTaGCATCTTTGCAGTGGCCGTTATTCTGCCCACCGCAGGGGCCCC | + |
|
Preference number: 5 (lower is better) Translates to: ESHLQDLCGSSGDKI*HLCSGRYSAHRRGP Trigger: GGGGCCCCTGCGGTGGGCAGAATAACGGCCACTGCAAAGATGCCAAATCTTATCCCCAGAGCTTCCGCAGAGATCCTGCAGATGTGATTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 8 transcripts: ENST00000432830.2 ENST00000656530.1 ENST00000657727.1 ENST00000658211.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 ENST00000669036.1 |
||
| CDS CCA 90 bp | GGTCTTTGCGGTAGGCCAGTGTTGTTGTCGTGGGCACCTAAGTTGTaGGCACTGGAGGGATGGAGGCCTTTAGGCTGCACCAAGTTACCT | + |
|
Preference number: 5 (lower is better) Translates to: GLCGRPVLLSWAPKL*ALEGWRPLGCTKLP Trigger: AGGTAACTTGGTGCAGCCTAAAGGCCTCCATCCCTCCAGTGCCCACAACTTAGGTGCCCACGACAACAACACTGGCCTACCGCAAAGACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000656530.1 ENST00000657727.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 ENST00000669036.1 |
||
| CDS TCA 90 bp | TGGTGGAGGATGTTTCCCGTGTCACAGCTGCAAGTAGGAAGAGTGTaGATCCCTGTGAATCGGCAGAGAAGAGCAAGGGGAGGGTTCAGG | + |
|
Preference number: 5 (lower is better) Translates to: WWRMFPVSQLQVGRV*IPVNRQRRARGGFR Trigger: CCTGAACCCTCCCCTTGCTCTTCTCTGCCGATTCACAGGGATTCACACTCTTCCTACTTGCAGCTGTGACACGGGAAACATCCTCCACCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669036.1 |
||
| CDS GCA 90 bp | GTGGGCACTGGAGGGATGGAGGCCTTTAGGCTGCACCAAGTTACCTaGCTCGGCTTCTGGTTCCTCAACTATAAAACCAGATGGTCAGAG | + |
|
Preference number: 5 (lower is better) Translates to: VGTGGMEAFRLHQVT*LGFWFLNYKTRWSE Trigger: CTCTGACCATCTGGTTTTATAGTTGAGGAACCAGAAGCCGAGGCAGGTAACTTGGTGCAGCCTAAAGGCCTCCATCCCTCCAGTGCCCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000656530.1 ENST00000657727.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 ENST00000669036.1 |
||
| CDS TCA 90 bp | CATCATCAGGCTCTTCCCAATGTGAAGGAAGCTTTGACTCCATGGTaGACCCTTTATTGGGGGCTGACTCCAGGCCCGGCTATGGTTGTA | + |
|
Preference number: 5 (lower is better) Translates to: HHQALPNVKEALTPW*TLYWGLTPGPAMVV Trigger: TACAACCATAGCCGGGCCTGGAGTCAGCCCCCAATAAAGGGTTCACCATGGAGTCAAAGCTTCCTTCACATTGGGAAGAGCCTGATGATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000656530.1 ENST00000657727.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 |
||
| CDS CCA 90 bp | GGGCTGACTCCAGGCCCGGCTATGGTTGTATTTTACAGAACTTGCTaGAGACACCTGTCTTGCTGGGCTGATGGATTCAGAACCAATGAT | + |
|
Preference number: 5 (lower is better) Translates to: GLTPGPAMVVFYRTC*RHLSCWADGFRTND Trigger: ATCATTGGTTCTGAATCCATCAGCCCAGCAAGACAGGTGTCTCCAGCAAGTTCTGTAAAATACAACCATAGCCGGGCCTGGAGTCAGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000432830.2 ENST00000656530.1 ENST00000657727.1 ENST00000658211.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 ENST00000669036.1 |
||
| CDS CCA 90 bp | GTGGTGTCAGTTTCCCAAGGCTGCTGTAATGAATATCCACAGACTTaGAGGCTTAAACAACACACACTGTCTTATGGTTCTCAAAATCAG | + |
|
Preference number: 5 (lower is better) Translates to: VVSVSQGCCNEYPQT*RLKQHTLSYGSQNQ Trigger: CTGATTTTGAGAACCATAAGACAGTGTGTGTTGTTTAAGCCTCCAAGTCTGTGGATATTCATTACAGCAGCCTTGGGAAACTGACACCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669036.1 |
||
| CDS GCA 72 bp | CCCATCTCTGCCCTGGGGGACACCCCCTGCCAAGTTTaGTTGGAGGCTCCTTTGAGCTCAGGCACGCCCAAG | + |
|
Preference number: 6 (lower is better) Translates to: PISALGDTPCQV*LEAPLSSGTPK Trigger: CTTGGGCGTGCCTGAGCTCAAAGGAGCCTCCAAGCAAACTTGGCAGGGGGTGTCCCCCAGGGCAGAGATGGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000658211.1 |
||
| CDS GCA 72 bp | GCTGCCTTCCTGTCTTTTCAGCTTCCAGAGGCCGCCTaGACGCCTCAGGGTCCCCGCAGCAGACCACATCAC | + |
|
Preference number: 6 (lower is better) Translates to: AAFLSFQLPEAA*TPQGPRSRPHH Trigger: GTGATGTGGTCTGCTGCGGGGACCCTGAGGCGTGCAGGCGGCCTCTGGAAGCTGAAAAGACAGGAAGGCAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000669036.1 |
||
| CDS CCA 72 bp | ACATGCTGTATGGGGACAGGTTCCACTGGGCTGCCTTaGCAGCCTGGGCTGAGGGGCCCAATGCTGGTGACT | + |
|
Preference number: 6 (lower is better) Translates to: TCCMGTGSTGLP*QPGLRGPMLVT Trigger: AGTCACCAGCATTGGGCCCCTCAGCCCAGGCTGCCAAGGCAGCCCAGTGGAACCTGTCCCCATACAGCATGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000656530.1 ENST00000657727.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 |
||
| CDS CAA 72 bp | GGGGACACCCCCTGCCAAGTTTGCTTGGAGGCTCCTTaGAGCTCAGGCACGCCCAAGAGCCAGAAGGAGAGG | + |
|
Preference number: 6 (lower is better) Translates to: GDTPCQVCLEAP*SSGTPKSQKER Trigger: CCTCTCCTTCTGGCTCTTGGGCGTGCCTGAGCTCAAAGGAGCCTCCAAGCAAACTTGGCAGGGGGTGTCCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000658211.1 |
||
| CDS CAA 72 bp | ATCTCTGCCCTGGGGGACACCCCCTGCCAAGTTTGCTaGGAGGCTCCTTTGAGCTCAGGCACGCCCAAGAGC | + |
|
Preference number: 6 (lower is better) Translates to: ISALGDTPCQVC*EAPLSSGTPKS Trigger: GCTCTTGGGCGTGCCTGAGCTCAAAGGAGCCTCCAAGCAAACTTGGCAGGGGGTGTCCCCCAGGGCAGAGAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000658211.1 |
||
| CDS CCA 72 bp | GTAGGGAGCCTCGAGGGTCCCGTCCAGGTCTACAGGTaGATAACCTGTGCGCAGAGGCCACACTGTGAGAGA | + |
|
Preference number: 6 (lower is better) Translates to: VGSLEGPVQVYR*ITCAQRPHCER Trigger: TCTCTCACAGTGTGGCCTCTGCGCACAGGTTATCCACCTGTAGACCTGGACGGGACCCTCGAGGCTCCCTAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000432830.2 ENST00000656530.1 ENST00000657727.1 ENST00000658211.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 ENST00000669036.1 |
||
| CDS CCA 72 bp | CAGCCCATGACAGAAGTGGAACACGGCCTGCACGGGTaGCACCAAGGCGGCATCATCAGGCTCTTCCCAATG | + |
|
Preference number: 6 (lower is better) Translates to: QPMTEVEHGLHG*HQGGIIRLFPM Trigger: CATTGGGAAGAGCCTGATGATGCCGCCTTGGTGCCACCCGTGCAGGCCGTGTTCCACTTCTGTCATGGGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000656530.1 ENST00000657727.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 |
||
| CDS CCA 72 bp | GGTAGGCCAGTGTTGTTGTCGTGGGCACCTAAGTTGTaGGCACTGGAGGGATGGAGGCCTTTAGGCTGCACC | + |
|
Preference number: 6 (lower is better) Translates to: GRPVLLSWAPKL*ALEGWRPLGCT Trigger: GGTGCAGCCTAAAGGCCTCCATCCCTCCAGTGCCCACAACTTAGGTGCCCACGACAACAACACTGGCCTACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000656530.1 ENST00000657727.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 ENST00000669036.1 |
||
| CDS CCA 72 bp | CCAGTGAGGCCGAGGGCCCCCTTTTCAGACATACAGTaGCACCTTGTTCCTCTGGGCTGGGTCTTTGCGGTA | + |
|
Preference number: 6 (lower is better) Translates to: PVRPRAPFSDIQ*HLVPLGWVFAV Trigger: TACCGCAAAGACCCAGCCCAGAGGAACAAGGTGCCACTGTATGTCTGAAAAGGGGGCCCTCGGCCTCACTGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000656530.1 ENST00000657727.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 ENST00000669036.1 |
||
| CDS CAA 72 bp | TGCGGTAGGCCAGTGTTGTTGTCGTGGGCACCTAAGTaGTGGGCACTGGAGGGATGGAGGCCTTTAGGCTGC | + |
|
Preference number: 6 (lower is better) Translates to: CGRPVLLSWAPK*WALEGWRPLGC Trigger: GCAGCCTAAAGGCCTCCATCCCTCCAGTGCCCACAACTTAGGTGCCCACGACAACAACACTGGCCTACCGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000656530.1 ENST00000657727.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 ENST00000669036.1 |
||
| CDS CAA 72 bp | TCCTCTGGGCTGGGTCTTTGCGGTAGGCCAGTGTTGTaGTCGTGGGCACCTAAGTTGTGGGCACTGGAGGGA | + |
|
Preference number: 6 (lower is better) Translates to: SSGLGLCGRPVL*SWAPKLWALEG Trigger: TCCCTCCAGTGCCCACAACTTAGGTGCCCACGACAACAACACTGGCCTACCGCAAAGACCCAGCCCAGAGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000656530.1 ENST00000657727.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 ENST00000669036.1 |
||
| CDS CAA 90 bp | TCTGCCCTGGGGGACACCCCCTGCCAAGTTTGCTTGGAGGCTCCTTaGAGCTCAGGCACGCCCAAGAGCCAGAAGGAGAGGACTTGTAAA | + |
|
Preference number: 6 (lower is better) Translates to: SALGDTPCQVCLEAP*SSGTPKSQKERTCK Trigger: TTTACAAGTCCTCTCCTTCTGGCTCTTGGGCGTGCCTGAGCTCAAAGGAGCCTCCAAGCAAACTTGGCAGGGGGTGTCCCCCAGGGCAGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000658211.1 |
||
| CDS CAA 90 bp | GAGCCACCTTTCTTCATGGCGGCCCTGCAGGCCCCAGGCTTGGTGTaGCGGGAAGAGCCTTTCATGAACAGGTCCATGTCGCTCTTTTCT | + |
|
Preference number: 6 (lower is better) Translates to: EPPFFMAALQAPGLV*REEPFMNRSMSLFS Trigger: AGAAAAGAGCGACATGGACCTGTTCATGAAAGGCTCTTCCCGCAACACCAAGCCTGGGGCCTGCAGGGCCGCCATGAAGAAAGGTGGCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000656530.1 ENST00000657727.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 |
||
| CDS CCA 72 bp | TTGTCGTGGGCACCTAAGTTGTGGGCACTGGAGGGATaGAGGCCTTTAGGCTGCACCAAGTTACCTGCCTCG | + |
|
Preference number: 6 (lower is better) Translates to: LSWAPKLWALEG*RPLGCTKLPAS Trigger: CGAGGCAGGTAACTTGGTGCAGCCTAAAGGCCTCCATCCCTCCAGTGCCCACAACTTAGGTGCCCACGACAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000656530.1 ENST00000657727.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 ENST00000669036.1 |
||
| CDS CAA 72 bp | TGTTCCTCTGGGCTGGGTCTTTGCGGTAGGCCAGTGTaGTTGTCGTGGGCACCTAAGTTGTGGGCACTGGAG | + |
|
Preference number: 6 (lower is better) Translates to: CSSGLGLCGRPV*LSWAPKLWALE Trigger: CTCCAGTGCCCACAACTTAGGTGCCCACGACAACAACACTGGCCTACCGCAAAGACCCAGCCCAGAGGAACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000656530.1 ENST00000657727.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 ENST00000669036.1 |
||
| CDS CAA 90 bp | CTGGGTCTTTGCGGTAGGCCAGTGTTGTTGTCGTGGGCACCTAAGTaGTGGGCACTGGAGGGATGGAGGCCTTTAGGCTGCACCAAGTTA | + |
|
Preference number: 6 (lower is better) Translates to: LGLCGRPVLLSWAPK*WALEGWRPLGCTKL Trigger: TAACTTGGTGCAGCCTAAAGGCCTCCATCCCTCCAGTGCCCACAACTTAGGTGCCCACGACAACAACACTGGCCTACCGCAAAGACCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000656530.1 ENST00000657727.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 ENST00000669036.1 |
||
| CDS GCA 72 bp | CATACAGTGGCACCTTGTTCCTCTGGGCTGGGTCTTTaGGGTAGGCCAGTGTTGTTGTCGTGGGCACCTAAG | + |
|
Preference number: 6 (lower is better) Translates to: HTVAPCSSGLGL*GRPVLLSWAPK Trigger: CTTAGGTGCCCACGACAACAACACTGGCCTACCGCAAAGACCCAGCCCAGAGGAACAAGGTGCCACTGTATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000656530.1 ENST00000657727.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 ENST00000669036.1 |
||
| CDS TCA 72 bp | CTACAGGTGGATAACCTGTGCGCAGAGGCCACACTGTaGGAGAAGACCTGGTGGAGGATGTTTCCCGTGTCA | + |
|
Preference number: 6 (lower is better) Translates to: LQVDNLCAEATL*EKTWWRMFPVS Trigger: TGACACGGGAAACATCCTCCACCAGGTCTTCTCTCACAGTGTGGCCTCTGCGCACAGGTTATCCACCTGTAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000432830.2 ENST00000656530.1 ENST00000657727.1 ENST00000658211.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 ENST00000669036.1 |
||
| CDS TCA 72 bp | GCTCTTCCCAATGTGAAGGAAGCTTTGACTCCATGGTaGACCCTTTATTGGGGGCTGACTCCAGGCCCGGCT | + |
|
Preference number: 6 (lower is better) Translates to: ALPNVKEALTPW*TLYWGLTPGPA Trigger: AGCCGGGCCTGGAGTCAGCCCCCAATAAAGGGTTCACCATGGAGTCAAAGCTTCCTTCACATTGGGAAGAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000656530.1 ENST00000657727.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 |
||
| CDS CCA 72 bp | CGTCCAGTGAGTGAGGAGGGATTCCAGATGAGCCTCTaGACCCTCTTCCTATGCGCAGATGGCTTGTATCCT | + |
|
Preference number: 6 (lower is better) Translates to: RPVSEEGFQMSL*TLFLCADGLYP Trigger: AGGATACAAGCCATCTGCGCATAGGAAGAGGGTCCAGAGGCTCATCTGGAATCCCTCCTCACTCACTGGACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000432830.2 ENST00000656530.1 ENST00000657727.1 ENST00000658211.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 ENST00000669036.1 |
||
| CDS TCA 72 bp | ATGTTTCCCGTGTCACAGCTGCAAGTAGGAAGAGTGTaGATCCCCAGGAGAATCTCCGCAACATGTGGGGAG | + |
|
Preference number: 6 (lower is better) Translates to: MFPVSQLQVGRV*IPRRISATCGE Trigger: CTCCCCACATGTTGCGGAGATTCTCCTGGGGATTCACACTCTTCCTACTTGCAGCTGTGACACGGGAAACAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000432830.2 ENST00000657727.1 ENST00000661908.1 ENST00000669012.1 |
||
| CDS GCA 72 bp | GGAGGGATGGAGGCCTTTAGGCTGCACCAAGTTACCTaGCTCGGCTTCTGGTTCCTCAACTATAAAACCAGA | + |
|
Preference number: 6 (lower is better) Translates to: GGMEAFRLHQVT*LGFWFLNYKTR Trigger: TCTGGTTTTATAGTTGAGGAACCAGAAGCCGAGGCAGGTAACTTGGTGCAGCCTAAAGGCCTCCATCCCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000656530.1 ENST00000657727.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 ENST00000669036.1 |
||
| CDS TCA 72 bp | ATGTTTCCCGTGTCACAGCTGCAAGTAGGAAGAGTGTaGATCCCTGTGAATCGGCAGAGAAGAGCAAGGGGA | + |
|
Preference number: 6 (lower is better) Translates to: MFPVSQLQVGRV*IPVNRQRRARG Trigger: TCCCCTTGCTCTTCTCTGCCGATTCACAGGGATTCACACTCTTCCTACTTGCAGCTGTGACACGGGAAACAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669036.1 |
||
| CDS CAA 72 bp | TGTGAAGGAAGCTTTGACTCCATGGTGAACCCTTTATaGGGGGCTGACTCCAGGCCCGGCTATGGTTGTATT | + |
|
Preference number: 6 (lower is better) Translates to: CEGSFDSMVNPL*GADSRPGYGCI Trigger: AATACAACCATAGCCGGGCCTGGAGTCAGCCCCCAATAAAGGGTTCACCATGGAGTCAAAGCTTCCTTCACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000656530.1 ENST00000657727.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 |
||
| CDS GCA 72 bp | GTTGCTGGAAGACTCGAATCACATCTGCAGGATCTCTaGGGAAGCTCTGGGGATAAGATTTGGCATCTTTGC | + |
|
Preference number: 6 (lower is better) Translates to: VAGRLESHLQDL*GSSGDKIWHLC Trigger: GCAAAGATGCCAAATCTTATCCCCAGAGCTTCCGCAGAGATCCTGCAGATGTGATTCGAGTCTTCCAGCAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000432830.2 ENST00000656530.1 ENST00000657727.1 ENST00000658211.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 ENST00000669036.1 |
||
| CDS GCA 72 bp | AGTGAGGTGGTGTTGCTGGAAGACTCGAATCACATCTaGAGGATCTCTGCGGAAGCTCTGGGGATAAGATTT | + |
|
Preference number: 6 (lower is better) Translates to: SEVVLLEDSNHI*RISAEALGIRF Trigger: AAATCTTATCCCCAGAGCTTCCGCAGAGATCCTGCAGATGTGATTCGAGTCTTCCAGCAACACCACCTCACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000432830.2 ENST00000656530.1 ENST00000657727.1 ENST00000658211.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 ENST00000669036.1 |
||
| CDS CAA 90 bp | TCTTCCCAATGTGAAGGAAGCTTTGACTCCATGGTGAACCCTTTATaGGGGGCTGACTCCAGGCCCGGCTATGGTTGTATTTTACAGAAC | + |
|
Preference number: 6 (lower is better) Translates to: SSQCEGSFDSMVNPL*GADSRPGYGCILQN Trigger: GTTCTGTAAAATACAACCATAGCCGGGCCTGGAGTCAGCCCCCAATAAAGGGTTCACCATGGAGTCAAAGCTTCCTTCACATTGGGAAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENST00000656530.1 ENST00000657727.1 ENST00000661908.1 ENST00000667584.1 ENST00000669012.1 |
||
| CDS CCA 72 bp | GTTTCCCAAGGCTGCTGTAATGAATATCCACAGACTTaGAGGCTTAAACAACACACACTGTCTTATGGTTCT | + |
|
Preference number: 6 (lower is better) Translates to: VSQGCCNEYPQT*RLKQHTLSYGS Trigger: AGAACCATAAGACAGTGTGTGTTGTTTAAGCCTCCAAGTCTGTGGATATTCATTACAGCAGCCTTGGGAAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669036.1 |
||
| CDS TCA 72 bp | TTAAAGCTACGTTTGCTTATAGCTCTTACAGAGTTATaGAGGCAAAGCAAATTTGTAAAGTTACAGCTCCAA | + |
|
Preference number: 6 (lower is better) Translates to: LKLRLLIALTEL*RQSKFVKLQLQ Trigger: TTGGAGCTGTAACTTTACAAATTTGCTTTGCCTTCATAACTCTGTAAGAGCTATAAGCAAACGTAGCTTTAA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000656530.1 ENST00000657727.1 ENST00000661908.1 ENST00000667584.1 |
||